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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00070806 ID=TCONS_00070806|Name=TCONS_00070806|organism=Clytia hemisphaerica|type=transcript|length=2019bpRun BLAST on NCBI transcript from alignment at scaffold_58:468936..475617+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00070806 ID=TCONS_00070806|Name=TCONS_00070806|organism=Clytia hemisphaerica|type=transcript|length=6682bp|location=Sequence derived from alignment at scaffold_58:468936..475617+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00070806 vs. Swiss-Prot (Human)
Match: HMCN1 (Hemicentin-1 OS=Homo sapiens GN=HMCN1 PE=1 SV=2) HSP 1 Score: 191.43 bits (485), Expect = 3.463e-50 Identity = 101/230 (43.91%), Postives = 148/230 (64.35%), Query Frame = 2
Query: 599 KVDGGLSKWSEFTECSASCGEGAKFRERSCTNPLPQNGGASCEALGELSESQACKIKECPVNGQYGAWSAYSQCSKSCGGGNQKKTRKCDSPAPAHGGAECKGPAEDERPCNTQACPVNGKYGAWSAYSQCSKSCGGGNQKKTRKCDSPAPAHGGAACEGPAEDERACNTNGCPVNGKWXXXXXXXXXXXXXXXXXXXXXXXCNNPAPKNGGSQCSGSATQSATCNTQAC 1288
+V GG S+WS + CS +CG+G + R R C PLP NGG C+ G E + C+ K CPV+G + WS + +C++SCG GNQ +TR C++P+ HGG C+G A + CN + CPV+G + AW + CS+SCG G Q + R C++P PA GG+ C+G + CN CP++GKW ++ S+ +CS +CGGG++ R+R C++P P+ GG +C GS QS CN+ C
Sbjct: 4527 QVHGGFSQWSAWRACSVTCGKGIQKRSRLCNQPLPANGGKPCQ--GSDLEMRNCQNKPCPVDGSWSEWSLWEECTRSCGRGNQTRTRTCNNPSVQHGGRPCEGNAVEIIMCNIRPCPVHGAWSAWQPWGTCSESCGKGTQTRARLCNNPPPAFGGSYCDGAETQMQVCNERNCPIHGKWATWASWSACSVSCGGGARQRTRGCSDPVPQYGGRKCEGSDVQSDFCNSDPC 4754 HSP 2 Score: 186.037 bits (471), Expect = 1.528e-48 Identity = 102/229 (44.54%), Postives = 139/229 (60.70%), Query Frame = 2
Query: 602 VDGGLSKWSEFTECSASCGEGAKFRERSCTNPLPQNGGASCEALGELSESQACKIKECPVNGQYGAWSAYSQCSKSCGGGNQKKTRKCDSPAPAHGGAECKGPAEDERPCNTQACPVNGKYGAWSAYSQCSKSCGGGNQKKTRKCDSPAPAHGGAACEGPAEDERACNTNGCPVNGKWXXXXXXXXXXXXXXXXXXXXXXXCNNPAPKNGGSQCSGSATQSATCNTQAC 1288
VDG S+WS + EC+ SCG G + R R+C NP Q+GG CE G E C I+ CPV+G + AW + CS+SCG G Q + R C++P PA GG+ C G + CN + CP++GK+ W+++S CS SCGGG +++TR C P P +GG CEG CN++ CP +G W + +G+CS+TC GG R R+C+NP P NGG C G +Q CNT C
Sbjct: 4585 VDGSWSEWSLWEECTRSCGRGNQTRTRTCNNPSVQHGGRPCE--GNAVEIIMCNIRPCPVHGAWSAWQPWGTCSESCGKGTQTRARLCNNPPPAFGGSYCDGAETQMQVCNERNCPIHGKWATWASWSACSVSCGGGARQRTRGCSDPVPQYGGRKCEGSDVQSDFCNSDPCPTHGNWSPWSGWGTCSRTCNGGQMRRYRTCDNPPPSNGGRACGGPDSQIQRCNTDMC 4811 HSP 3 Score: 182.956 bits (463), Expect = 1.636e-47 Identity = 100/229 (43.67%), Postives = 141/229 (61.57%), Query Frame = 2
Query: 602 VDGGLSKWSEFTECSASCGEGAKFRERSCTNPLPQNGGASCEALGELSESQACKIKECPVNGQYGAWSAYSQCSKSCGGGNQKKTRKCDSPAPAHGGAECKGPAEDERPCNTQACPVNGKYGAWSAYSQCSKSCGGGNQKKTRKCDSPAPAHGGAACEGPAEDERACNTNGCPVNGKWXXXXXXXXXXXXXXXXXXXXXXXCNNPAPKNGGSQCSGSATQSATCNTQAC 1288
V G S W + CS SCG+G + R R C NP P GG+ C+ G ++ Q C + CP++G++ W+++S CS SCGGG +++TR C P P +GG +C+G CN+ CP +G + WS + CS++C GG ++ R CD+P P++GG AC GP + CNT+ CPV+G WGS+ S+ CS +CGGG K+R R C++P P GG C G TQ CN QAC
Sbjct: 4642 VHGAWSAWQPWGTCSESCGKGTQTRARLCNNPPPAFGGSYCD--GAETQMQVCNERNCPIHGKWATWASWSACSVSCGGGARQRTRGCSDPVPQYGGRKCEGSDVQSDFCNSDPCPTHGNWSPWSGWGTCSRTCNGGQMRRYRTCDNPPPSNGGRACGGPDSQIQRCNTDMCPVDGSWGSWHSWSQCSASCGGGEKTRKRLCDHPVPVKGGRPCPGDTTQVTRCNVQAC 4868 HSP 4 Score: 160.614 bits (405), Expect = 1.487e-40 Identity = 73/173 (42.20%), Postives = 101/173 (58.38%), Query Frame = 2
Query: 602 VDGGLSKWSEFTECSASCGEGAKFRERSCTNPLPQNGGASCEALGELSESQACKIKECPVNGQYGAWSAYSQCSKSCGGGNQKKTRKCDSPAPAHGGAECKGPAEDERPCNTQACPVNGKYGAWSAYSQCSKSCGGGNQKKTRKCDSPAPAHGGAACEGPAEDERACNTNGCP 1120
+ G + W+ ++ CS SCG GA+ R R C++P+PQ GG CE G +S C CP +G + WS + CS++C GG ++ R CD+P P++GG C GP + CNT CPV+G +G+W ++SQCS SCGGG + + R CD P P GG C G CN CP
Sbjct: 4699 IHGKWATWASWSACSVSCGGGARQRTRGCSDPVPQYGGRKCE--GSDVQSDFCNSDPCPTHGNWSPWSGWGTCSRTCNGGQMRRYRTCDNPPPSNGGRACGGPDSQIQRCNTDMCPVDGSWGSWHSWSQCSASCGGGEKTRKRLCDHPVPVKGGRPCPGDTTQVTRCNVQACP 4869 HSP 5 Score: 102.834 bits (255), Expect = 2.814e-22 Identity = 54/124 (43.55%), Postives = 67/124 (54.03%), Query Frame = 2
Query: 578 FASQAPPKVDGGLSKWSEFTECSASCGEGAKFRERSCTNPLPQNGGASCEALGELSESQACKIKECPVNGQYGAWSAYSQCSKSCGGGNQKKTRKCDSPAPAHGGAECKGPAEDERPCNTQACP 949
F + P G S WS + CS +C G R R+C NP P NGG +C G S+ Q C CPV+G +G+W ++SQCS SCGGG + + R CD P P GG C G CN QACP
Sbjct: 4748 FCNSDPCPTHGNWSPWSGWGTCSRTCNGGQMRRYRTCDNPPPSNGGRACG--GPDSQIQRCNTDMCPVDGSWGSWHSWSQCSASCGGGEKTRKRLCDHPVPVKGGRPCPGDTTQVTRCNVQACP 4869 The following BLAST results are available for this feature:
BLAST of TCONS_00070806 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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