TCONS_00070816 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00070816
Unique Name	TCONS_00070816
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1336

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at scaffold_58:533526..540308+

transcript sequence

>TCONS_00070816 ID=TCONS_00070816|Name=TCONS_00070816|organism=Clytia hemisphaerica|type=transcript|length=1336bp
CCTGACCCTTAGAGACTATTTTAACTTTTGTTGTTGGAAAgATGGGGCCA
ATCACCATGCGTTACCGAactttgtgccaaatattatcCGATATGATGTC
AGAGCAAGTGTTCGATTACTTAAGGACCAGAGAGCAACTAGGATATTATG
TTGGTGGTTCTTACGAAGAAGATGGTGGTATCCTTGGCTTCTCATTCATC
GTTCAaacacaaaaaggaaaattcagtgcGGATGAAGTGGATCAGAAGAT
TGAAGAGTTTATTTTGTTCTATCAAGACAAACTGAAGAATTTCACTCCTG
AAGAATACGATGGATATGTGCAAGCCTACATCAAGAAAAGTCAGACGGCT
GATCTTTGCTTATCCGACGAAGTGGATAGGAATTGGCATACGANTACATC
AAGAAAAGTCAGACGGCTGATCTTTGCTTATCCGACGAAATGGATAGGAA
TTGGCATACGATCAGAGAAGGGCTCTATTTATTTGACTTGATCGAAAGGA
AgTGCGAAATTGCATTGACCATCACAAAAGGGGAAATAGAAGAGTTTTAC
CAACGATACTTCGTGGATAAAGATAACGTGAAGAAGCTTTCCTGCCAGGT
CATTGGGCATCACGACAACTCGTCCGATGATAGTGATGGTGAAGAATCAG
ATGATTGTGGTTCTGGTAATGAGgaaaatgaaaacgaaagtgaaagtgga
aATTCATCGTCAGAAGAAGACGAAGATGACGAAGCTCCACAAAAAGTGTC
TTGTCCTGATGATGTTGTGATTAAAGGATATGAACCTGTCCCTGTTGATT
TAGGAGAGCGATACGATCGTTGTATCACCGACATCAAAGATTTTCAACAA
CAATGTGGATTCCATGACTATGTTCAACTCAAGTATGACAGTTGAATGTT
TCGATGTCTGTTGGTTACGTACGTACGGTTTAAAGAGAAAGTGCAGGAGA
ATATCGTTTTGTTGCTCCCGTTAGCCTCTGATCCGGAGTCACTGCCTACA
AAAGTCCAGTCTAAATTCTCATGATCACATGATTAATGTTATTAACAGAG
GAAAAGTTGGTGGTTAAACAGTCATGGATTAGAAACGGAAACACATGCAC
ATGCATTTACATTTGATGTAAAgatttttgcgattttgagTTGGTATCCT
TGCTAGCGAGTAGTGGTTGaatctttttttaagaattccATTAATCAAAG
TTCTAATCACATATGGGTTTGATATAGTAATCTTTTTTATGACATAGAAA
AAATATGAGTATTTATAAGTTCCAAATTATGATTCATATGAAGATTTTGt
agtttttaagaatatttttacaattttagtgACGAT

Run BLAST on NCBI

transcript from alignment at scaffold_58:533526..540308+

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00070816 ID=TCONS_00070816|Name=TCONS_00070816|organism=Clytia hemisphaerica|type=transcript|length=6783bp|location=Sequence derived from alignment at scaffold_58:533526..540308+ (Clytia hemisphaerica)
CCTGACCCTTAGAGACTATTTTAACTTTTGTTGTTGGAAAggttatattt
ttttccaataattttatatataaatatatctttttaaatttttttcaatt
cattcttTATGCCATGTCGTTCTAGTTTCAGTTTCGGAATTCGCTCTTGT
TATGTTCATagtggcccttcgtggaaacaattctccagctgcctaaaagc
ttttgaattttttggagCACGCCACTTGAAACACACATTATTAtatcatt
atttaaaaaaaaaacgaccgTCGGCACGTACCCAACACATATTTTGTGCT
ATAGTACCCCCACCCACCCCGGGTACAGTTAAAAATAGTTTGACATAAGG
TAACGTTCCCTCTGAAATGGTTGTATGTTTTTGAAAGCTGTCAAAACGTA
GAAACTTTTCTGCATCAGTTTTGTGGAGTTTGTTTAATGGTTCCTATTTA
TTTTCAGATGGGGCCAATCACCATGCGTTACCGAactttgtgccaaatat
tatcCGTAAGTCATCATTTCGTAACCTTCAAAAACGATACCGATAATTAC
TCGAAATctcctttaactcgaacaaattgtCGTTCCCCGTGGGTGCGTGT
TCGAGTTGGAGACTCGACtgtatttattgaatatttggAGTTCCGTCGTC
ATTTTTGTGACGACCAAATGTAgcgatttttctttttgatttcgtcGTCA
ACTTTTTTGTCTTGCCGTCAAAATAAAGAAGGTCGGTTTTAATAGAACAA
ATGGGCTTCCGTATTACGAATGTTGTCTTTTATGTTCCATGTGGAAAGTG
ACTTGAAAGATCTCTGGCATGGAATTTAGGGGAAATGATTTTGTGTACGA
AAACCTTCgcaaaactaaagaaaaactAACAAAACTCTTCCTTGCAACCA
ATTATGGTATGCCAAACCTGAGGGATGCGTAAACGTACCCAGCCTAGTGA
TCAGTGAAATACTCTTAACATGTGATTGTCATAATAATGCAATACTCTTA
GCACGTGACTGTCATAATAAGGACATTATGATCACCATTGCTCTATTAAT
TAATCCGTTTTGATCAATCAATAAGGTATTGATTTTATTTATAAAGGCAA
TGCACTTTTGCTGAAAGTTAAATTTGTATTACTACTTTCAGATGTCAAGG
AAAtagctttttcaaaaataacctGTTCCCCTTTTTAATCTGCTTAGTTC
AAAGAAATCTCTtgcttttcataaaaatttgaatgaagtTGGTATTTTTT
AAACCGTCAGGTGGAATTTAAACATCTTCTCTAGCTGGCTTTCTTAAGTC
GGGAACTCTGGGGCAATTTTAGAAATTACTTTCTAGGTTTAAAATGTCCA
GgtactttatgaaattttctcTCCCTCAAGACGacgagttatttttcaac
atggAACCATGCTATCAGCAAGAGAACCTAATCCTCTCAAAATTTCCTTC
TTATTCTCTCACTACATTTAAAGCTATATGATAGCTCTTACACCAATGTT
GAACGCTTGAACTACATTCAAATGTATACCATATCCATGATGATGAATAA
GATTTTACAAGATTTTAAATAGCTTACTATAGAATAACGACTGAGCTTTT
AAGCAGATCAGCCACATGAGTCTCTCGCAAGGGCCACTGAAAAAAAAGCT
AATACGTAAATAAttcaaatacacgctttttttataagaatgctgtaaat
ccgtttcatcatggatattcttaatttttttgggaaaattgtcctagaat
attcttacagcattcttaggttaggatacTAATTCAGACTAGTTAGttca
tacgtctcaagcataaaatggcatttttgtgaaaggagtgagcctttggg
gtaattgaaaatttataattgaaaatgctctaaaaatggcattcttagct
tgagtagcaaaattccatgatggtgatattcttaacattattcttaattt
tttggccattttcatcacggacattcttataaagtttattcttataaaaa
aaagcttgtaatCATAATTTATCCTCTCGTTTTTATAGAAATGATTTCAA
ACATTCACTTTATTTTGCAGGATATGATGTCAGAGCAAGTGTTCGATTAC
TTAAGGACCAGAGAGCAACTAGGGTATGTTTATAGCGTCTGTCATTTTCA
ATCTCTAACGAAGAACTCGGGGAGGGGCGGGCTCAATGTCCAAAAAGTTT
GCCTTCAAAATCGggcccttacagtgcagctcttgggcagtgaaaaggta
cccttacagtacattttACCTGGCGTTTCTCGCCCTTACAGTATAGTTTG
AGTGCATATCTTAGTTTGCTGAAGCTACTGAAAAATTAGCCAGAGACgtc
gacacaatgtgcaaaacagatcaaaatgGGTAcaagtcaaaactataaag
atacagcatatttttactgtcagacttgcaATTCAGCAGTCCCAAAACAC
ACCCTTAGCCTGacagtgtatccagctaaaagaagaaaagaagacCCTTC
AGTgcattctatcaaaagtacccccccccccccgacgaAGACAGTCACCT
TTCTGCTTTGCCTTCATTCGACGTAAAAGACGACCTAAGATCAATGGAAG
TTGGcagttttaaatctatttttgaATAGGGTTGACAAAAGCTAAATAGA
TCTGCATCGAATTGACATCAAAAGCATGCGCATTCATTGAGACCCCGAAC
GGGCTATTTCTGAAACTTTTGGACAGAAAAtcaagccacttatttcccat
ctaaatCACGTGACTCGCATGGTTTTCACACGAACGCTAGagtgaaagta
aaatttatcgctagattttgaaaaatatgttgcgcaaaaacaaaaactca
aCAATCGCACTGACTTTGGACTCTCGACTTATACCACCTAGTTTATGTTA
GTGAGAGGTAAGCACAAACAACACTAATtaaattgagtttgaagccccga
aGGGCATAAAGATTCAACCtatctcaagcaagaaaaagtaaagccaTAAG
TTTGCCCcgcatttagaaatttgtttgaaaaacacttggGTCACGTGTTT
TGTATGGGAAATAGGTGGCTTCATTTCCAATCAAGAACTTTCTGATCTAG
GCCTTgcggggctttgaaatcaaccTTCTTTATCCACAAGATGTTTTGTT
GGTGTATTATTAATTATGTCTAGCTAACTTTGATTTACTTCAGATATTAT
GTTGGTGGTTCTTACGAAGAAGATGGTGGTATCCTTGGCTTCTCATTCAT
CGTTCAaacacaaaaaggaaaattcaggTATTGTAAATATCATCAAGGTC
Tttttactctaggggctgagttaggtatcgtatgcacatcggcgtatagt
cattttttgttttgatcacgaaagtatagtccttgaagagtcagaaaacg
tatgtggcgttatttggaccaggcacaaatttccataatggcggatttta
gattttcaaccctttttagccctcttacttgaaaaaaattttcttttaac
tttaaacgtagacatattatataccaatcgatcacaaattttatgttgat
taagaaaaatgtcagaatcatggtctgaaaatttcgttatctggagatat
gaagcactttcgatttcgattttttgaaatgaataCTTTTGGTTCaagat
ttgcgtggctgtaacatttgattggcttacttaatttacttgaaattttc
ggagggtcttgcctaccgttcaaataatagaattcaggaaaatttaattt
tctacACGAAtatcgaaatccataatggcggattcaaaattttctttcgt
cacatgggctcttaggctctgctagcataaaaaaaaatattttttgagct
taaaaccctgcatattatataccaatcgatcagaaattttatgctgatta
agaaaaaggtcagaaccatggtctgaaaatttcgttatcatgagatacga
agtacttacgttttgtaagttttgaaaacgaaagtacttcatagctcgag
attATCAGAATCATTTAGAGGAAAGTATAACGAGtgaactttttcatttg
aaattttcagtgcGGATGAAGTGGATCAGAAGATTGAAGAGTTTATTTTG
TTCTATCAAGACAAACTGAAGAATTTCACTCCTGAAGAATACGATGGATA
TGTgcgtacagttgactctctagTTCGAACCGAACGGGAAAtctttgttc
gaattacagagaaatttgaataaaagaaaatggTTTCTCTTTGACAggga
ctggaaacaagttcgaattatagaaagattcgaataataagtTCGATTAA
GCGAGAGTCTACTATAATATCCCTTTGTTATAACCACGTTGCAGCGCTGT
CCTAAAGCCTCCTAAAATCTCGAAAGTAGTTTCTAATTAAGCACTAAGCC
ATGCAGTATGATTCCTTAGATTTTCCATTTACTACtgattcaaatcaaaa
aattgggCACCGAacgaaatcaagatttttatgtCANATGCAGTATGATT
CCTTAGATTTCCATTTACTACtgattcaaatcaaaaaattgggCACCGAA
CGAAATCGAGATTTTTATGTCCATGTACGCTCAGAGGATCGTGATAATTG
TATCTCATTGCTACCATTTTTTCTTTGCAGGTGCAAGCCTACATCAAGAA
AAGTCAGACGGCTGATCTTTGCTTATCCGACGAAGTGGATAGGAATTGGC
ATACGANTACATCAAGAAAAGTCAGACGGCTGATCTTTGCTTATCCGACG
AAATGGATAGGAATTGGCATACGATCAGAGAAGGGCTCTATTTATTTGAC
TTGATCGAAAGGAAggtatttcaattatttttcatcttcaaaatAGTTTT
TGATACAGCGGCATGACACAAAAAAATTCACTGCGTCCATCTGATACACA
ATGGTGACGTAATATTAATGTGTTACCACGAAAAAATATGAGAATGTGAA
AAAAGACTGGTGAGAGTGTagggattgaaaaaaaattgattaagacGTAA
GTCACAAAAATTGTAAATGGGCTAATTCAGAATAAATTTGTACCCCATAT
GTCGAGGAGGTCTTTTTTGGAAAGGTGCACCTCCCCctggatttttcaat
tttttcagggCGCCTTGGAtttctttctcaatttttgcaaCAACCCCATG
GACTTTTGAAAAACCAGCAACCTTCGATTTTCTATTTATTCCAAACCACC
CAGGACGCcatacctcctcaacatagcggtatagactatttctggaatag
cccgcCAATatcattttgttaatttttttatagTGCGAAATTGCATTGAC
CATCACAAAAGGGGAAATAGAAGAGTTTTACCAACGATACTTCGTGGATA
AAGATAACGTGAAGAAGCTTTCCTGCCAGGTATCTAATGAATAATAAACA
AAATTGCCGAGGATGGATTGACGTGGTTTAATCTCCAGCCTCTTCACATC
CATCTTTACGGCAACTGAATCTTTTCAACTGTTTTCCCctgctttttttg
ataattcAATAATTCTACTGAAGTAGACGGGGACGCtatcttaaaagaaa
aacacaaaatttcccAAATAACAGAAGAACTCCTTAACAGGCAGTTTATG
AGGATCTTTTATTCCGGAGGCTAAAGGGATTCAACTGTTTGAGATTAAGA
AAACCTAAACAGTAAATAAGATTGGTGTTTCAGGTCATTGGGCATCACGA
CAACTCGTCCGATGATAGTGATGGTGAAGAATCAGATGATTGTGGTTCTG
GTAATGAGgaaaatgaaaacgaaagtgaaagtggaaATTCATCGTCAGAA
GAAGACGAAGATGACGAAGCTCCACAAAAAGTGTCTTGTCCTGATGATGT
TGTGATTAAAGGATATGAACCTGTCCCTGTTGATTTAGGTATGTTGTAGC
TTCGTTTGTCTGCTTCATAAGTTATTCGCATTTCAAAGTTTCGATCTAAG
AGGCTAAGCTTGTGATTTAGAAGGCTCACTTTTTTCCTGCCTATTCCAAA
TGTGCATTAAAGTGAACAGAAAGTTTGCTGTTCAAATCCAATGCATTGTC
CATCAATTCAATGACTTCTTACAACTTTAATCAAGcaattagaatatttt
ttgaattctcgttattctttacaatatatttgaGTACCATGGTCCGCATC
TGCAAGTGGTTCTCTGGCGCTGGAATATTACAACTCCTCCTTACTTTTTG
GACGATTTGTTGACTGAAATATATCTATTGGTAAACATGTCTGTTTGTAG
GAGAGCGATACGATCGTTGTATCACCGACATCAAAGATTTTCAACAACAA
TGTGGATTCCATGACTATGTTCAACTCAAGTATGACAGTTGAATGTTTCG
ATGTCTGTTGGTTACGTACGTACGGTTTAAAGAGAAAGTGCAGGAGAATA
TCGTTTTGTTGCTCCCGTTAGCCTCTGATCCGGAGTCACTGCCTACAAAA
GTCCAGTCTAAATTCTCATGATCACATGATTAATGTTATTAACAGAGGAA
AAGTTGGTGGTTAAACAGTCATGGATTAGAAACGGAAACACATGCACATG
CATTTACATTTGATGTAAAgatttttgcgattttgagTTGGTATCCTTGC
TAGCGAGTAGTGGTTGaatctttttttaagaattccATTAATCAAAGTTC
TAATCACATATGGGTTTGATATAGTAATCTTTTTTATGACATAGAAAAAA
TATGAGTATTTATAAGTTCCAAATTATGATTCATATGAAGATTTTGtagt
ttttaagaatatttttacaattttagtgACGAT

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_044054	XLOC_044054	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_58	supercontig	scaffold_58:533526..540308 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.0511307	0	0	0	0	0	5.84306e-06	2.25834	6.17633e-08	1.64284	1.23322	0	0	0	0.905984	0.757902	2.33368	1.08966	0.111146	0.0130382	2.22463	0	0.36818	0	1.18987	0.00681355	0	4.06191e-10	0.000252561

Blast

[Close]

BLAST of TCONS_00070816 vs. Swiss-Prot (Human)
Match: NRDC (Nardilysin OS=Homo sapiens GN=NRDC PE=1 SV=2)

HSP 1 Score: 98.2117 bits (243), Expect = 1.170e-21
Identity = 49/121 (40.50%), Postives = 77/121 (63.64%), Query Frame = 3

Query:   45 GPITMRYRTLCQILSDMMSEQVFDYLRTREQLGYYVGGSYEEDGGILGFSFIVQTQKGKFSADEVDQKIEEFILFYQDKLKNFTPEEYDGYVQAYIKKSQTADLCLSDEVDRNWHTXTSRK 407
            G  ++R  TL ++L   M E  FD+LRT++ LGY+V  +     GILGFS  V TQ  K++++ VD+KIEEF+  +++K++N T E ++  V A IK  +  D  L +EVDRNW+   +++
Sbjct:  926 GTRSLREYTLMELLVMHMEEPCFDFLRTKQTLGYHVYPTCRNTSGILGFSVTVGTQATKYNSEVVDKKIEEFLSSFEEKIENLTEEAFNTQVTALIKLKECEDTHLGEEVDRNWNEVVTQQ 1046

The following BLAST results are available for this feature:

BLAST of TCONS_00070816 vs. Swiss-Prot (Human)

BLAST of TCONS_00070816 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
NRDC	1.170e-21	40.50	Nardilysin OS=Homo sapiens GN=NRDC PE=1 SV=2	[more]

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TCONS_00070816 (transcript) - C. hemisphaerica