TCONS_00070822 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00070822
Unique Name	TCONS_00070822
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	2633

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at scaffold_58:705377..710479+

transcript sequence

>TCONS_00070822 ID=TCONS_00070822|Name=TCONS_00070822|organism=Clytia hemisphaerica|type=transcript|length=2633bp
GTGTTTTTGTCGAGAATGAGTCTTGTGACAAAATTGCACAAATTGAAAGA
ATTGTGCTCCGAACTGGGATATAACATCCGAGTCAAAATCATCGACACAA
ATGAGAAAGAGGTGAATGGCATTTCAGATTTTCCGCCCAATTTCGTCATT
AACAATCAGATCGATGTAGAGTCAGTTCGGAacagtgcttccaaacccat
gCTATGTAGTAGTTGTAATGAACAGCTCCCTGCAACCGCCAGATGTTTAG
ACTGTATGGAATTTCTCTGCTACGCATGTCACAATGCACACAGTCGAGTG
CGCATGACAAAAGACCACCATattttgacgTTGGAGCAACTAAAGCGAAG
TGAAGACGTTTCAGGAATGTTACACAGACCTGTCTTTTGTCAAACACACA
AAGAAGAACGAGTCAGTTATTTCTGCAACACGTGTCAACAGACGATTTGT
CGCGAATGCGTCATCACAACACATCAACAAAACAGCCACGAATACACCAA
CATTGAACATGCCATTGAAGGTCAACGGAACGAGATCACCTCGCTTAAAC
AAGTTATTGAAATGAAACTTCCCATCCTCAATCGAGCCACGTCGCAGTTA
AGCGAGACACAACAGAAACTCGATTCCCGCTCTCAACTCATCACTTCAGA
GATCGAAGATCGCACGCCTCGCTTACTCAAACTTCTTGAACAAAAGGAAG
AAGAAATGTTGAGAGAATTGAATGAAATTGTCGAAGGGAAGAAGAAAATA
CTCCAAAAACAACTCGAACAACTCGAAGTTGAAACCAAAAACTTGAAATC
GCTCTATGAGTTTACAGGTCAGATCTTGAAGACGGGCACGTCAGCGGAGA
TCTTGATGGTCAAACAAGCGTTATGCGAGCGCATGAAAACAGCAGTGACG
TCAGAACAAACCTATGAACCCGAGGTGGACGATCAGATCAGCTGTGACAC
GAACGTTGACTCCATTGCATCTgccatcaaaagttatggtcaATTCTCAA
CACAAGGAGAAGTGTTCTTGAAATGCTTTGTTTTGGGAAGTGTGACCACT
GCTGTCAAAGGAATGTCCACTCAATTGACTTTACTGATCAAGAACCAACT
AGGACAAGAAGCTTCCGTCTCTAAAGAAGACATTGAAGTTGAAATGAAGA
CTCCAGACCTCGGTATAATCATGCCCGAAGTCAGGGAGAAAACATCCAGC
ACTTTCACGTTGAACTTTCGAACCTATTCTTTGGGTATACACCAGTTGCA
CATCAAACTGAAAGCGAAACACATCACGGGAAGTCCCTTCTCCATTAACG
TCATCAACAGTTCGGAGAAACAGAGACGTGGTAGTTCAGACAGCACTTCA
TCCAACGATAAAAGTCCTTCTCATCTTtccaccaattactccaaaccATT
GAGCCTTGAAATCAACGACCATCCTTCATACAAAAGATCAGATTCGAATG
AAGGTGCTAAAAACTTATACTCCAACGATCGACACTCTCCGAATCCTCCC
AATAATTACTATCTCGACAAAAATATGAACCCAACAAATGGTATAGATGA
CCCGAATTCTTCGTACAGAAACCTGCTTCTCAATACGGCTGAACTGTCCG
CTAAATATGTTTTCTCTATCGGACAGCGGGGaacaaatttcgcggaattt
caCGGTGTTTTTGGCGTTGCTAGCGACCACACAAACAAACGTATCATAGC
AACGGATTGCCATAACAACCGTATCCAAGTGTTCAATGAAGAAGGGAAAT
TTCTCTTTGCTTTTGGACAGAAGGGAAATAACGACGGTGAATTTCAACAC
CCGACGGGCGTGGGCGTTGGTCCGAATGGTGAAATTGTGGTTTGTGAAAG
ACTGAAAGGCAGAATACAGGTCTTCAATTCTGAGGGTCATTTCCAAAGAC
GATTTATTTTGAACCAATTGAAAGCGTCGACGCTAACAGTGGACATCGGA
GGGAGGATCATCATTGCAGATTACACCAGTTGTTGTATTTATATCCTCGA
CCCAATACTTGagcGTTGGTCGAAATTCGGACATTTTGGACAAAGTGAGG
GTGAATTGCAATACCCTGGTTACGTAGCAACCGATTTGAAAGGCAACATC
TTCGTCTCTGATATGAACAGCAACAAAGTACAGATGTACGATTCGGACAG
CATCTTTATTCGAAGTTTCGGACACAAAGGAGACGGGAACGGAGAATTTC
ACCATCCTACCGGAATCGCTATCGACATCAAAGGTCGGCTGGTTGTTGCC
GATCGGGATAATCATCGGATTCAGGTCATTCAAACATCAGGCGAGTACAT
CACAAAGTTCGGATCGAAATCGGAGCAAGGAGGCGATCTGAGCGATTTGC
ACGGTGTGACGGTGCTCTCTAACGGAAATATCGCAGCAGCTGATCTGAAG
AATAACAAGATTGTGGTGTTTACTTTGCCTCATACCACGGACCCTGTCAT
GATCTAGTTTTATTTTGTCTCGTGCCTTGGTCTACTTGGTTCAGAGTACC
AGAATAATCTTTGCTTAGAACAGAGAGGAAAACAATATGTAAATAGTCAT
AAATTTGATTAACATAATTATTTTTGGGTGTAAAATGAAAACTGTATTAA
AAGTTAGAGATTGAAATGTTAATTAATAGATAA

Run BLAST on NCBI

transcript from alignment at scaffold_58:705377..710479+

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00070822 ID=TCONS_00070822|Name=TCONS_00070822|organism=Clytia hemisphaerica|type=transcript|length=5103bp|location=Sequence derived from alignment at scaffold_58:705377..710479+ (Clytia hemisphaerica)
GTGTTTTTGTCGAGAATGAGTCTTGTGACAAAATTGCACAAATTGAAAGA
ATTGTGCTCCGAACTGGGATATAACATCCGAGTCAAAATCATCGACACAA
ATGAGAAAGAGGTAAAACCAATGTCTCTTAGAAATACAGACTGCTCCAAA
GAGATGTTTTATAAAACCCTGAATTCGTCTATAGTCATTAGTTTGGAAGG
ATCCCACAAACCATACTAAAGTTTAAAATCGAGTAATTATTTCTTCCAGA
AAAAGACCTCCTGCGTTCTCCACCATGCAAAGTAGTATGTTTGCTAGCTT
TatatcaaactttttgatcgAAATTCTTTGATAAAACAGATAAATACTTT
GCCCCGAAATCCGACGTCCCTAATTAATCATGTTCCTTAATATAGGCCTG
AAAGTTCCAAATAAAAAGATTAGCTACAGTAGGGGTTCGTTTTCAGAAAT
TAAGAAAAGTCAGCTTTTCCTGAAGAAATCGAATATTTGGTCTTTTGAAG
TCGACGAGAGAAGAAGTTTGCGCTGTGTGTTCTTTTCATTAGCAAACACA
AACTAAAGCTTTATTTCAAAGAACGCGTCCctctaaatgaaaaatgaaaa
tatatttgactTTTGAAGCCTCAATTCGGATTTCGACAAAAAGTCTTCTC
TTTTGACGATCAAGAGCTGAACGCAGGATGATGAGaagcttgaaaaatat
tttcgaagattctttccaacaaaagaagaaaagttgtTCGTTATGGCAAA
CATTCAATAAAGTGGTATAAGCTGTTTGGATGAGATGTAGCCTGTACCAA
CAGACAACAAACGAAAAACCCCCCGAAAAATTTTCTCGGTGTTCAATGTA
TTTGCTAGAAAGGAATCTGATTCTACGTAAGAAGCAGTATGAAACGATGG
AGAGCCAAAAGTAAACACATGTGGAGAATCGAGCTTCCTGTCAAAATTTC
TAAGCCATCCACAGTCCGAAGTCATATACCCTACTAAGACCTAAAATTCT
TTCCTTCGGATATTTAGctctgaaatttaattttattactTCTTCAGGTG
AATGGCATTTCAGATTTTCCGCCCAATTTCGTCATTAACAATCAGATCGA
TGTAGAGTCAGTTCGGAacagtgcttccaaacccatgCTATGTAGTAGTT
GTAATGAACAGCTCCCTGCAACCGCCAGATGTTTAGACTGTATGGAATTT
CTCTGCTACGCATGTCACAATGCACACAGTCGAGTGCGCATGACAAAAGA
CCACCATGTAAGTTTTAAAGTTGAGAAACATTAGTATGTTCAACTTCAAC
ATACCTCCAGTTGACCCTATCTAAAGATGTCTTCTTGATGCAAATTAAGA
GATGGATCGAGTCTTGTATATGTTTCGTGCTCAACCTCCAACGAATCCTG
AATCCGACCTCCACAATACcggccataatatttgagaaaaaagggaaatt
cccacgaaatcgatttggaagcgctctaacttaggttggaagggttttaa
ctctgagttttaacatgagacttaaaacttaagCTTAGGAtctgatccaa
aagttcaagaatggtccaatagggctaaTATAtggcctggaagtctataa
actcCACCCATGttgaaatttttgattatttctaaCGAATAGTTCTAAAG
CCACTTTCTCGCCTGGTGTTTAAAAtactaaaaacgaggaattaaccaaa
actctcaatatattttgaccgatatTGCAGATAAGATAATGATGATGCAa
ttaattttcagattttgacgTTGGAGCAACTAAAGCGAAGTGAAGACGTT
TCAGGAATGTTACACAGACCTGTCTTTTGTCAAACACACAAAGAAGAACG
AGTCAGGTATTGTTGTGTTTGCAAAACAAAAACGAATAAATTCATTTTAC
GgcatgaaaactaaattttcacaAGAATATTAACAGTCTATTATTTGCCT
CTGCTTAATGCAACGTGCAGCCTCAATATGTCGCATTCTCTACGTTCCCA
TAGTTATTTCTGCAACACGTGTCAACAGACGATTTGTCGCGAATGCGTCA
TCACAACACATCAACAAAACAGCCACGAATACACCAACATTGAACATGCC
ATTGAAGGTCAACGGAACGAGATCACCTCGCTTAAACAAGTTATTGAAAT
GAAACTTCCCATCCTCAATCGAGCCACGTCGCAGTTAAGCGAGACACAAC
AGAAACTCGATTCCCGCTCTCAACTCATCACTTCAGAGATCGAAGATCGC
ACGCCTCGCTTACTCAAACTTCTTGAACAAAAGGAAGAAGAAATGTTGAG
AGAATTGAATGAAATTGTCGAAGGGAAGAAGAAAATACTCCAAAAACAAC
TCGAACAACTCGAAGTTGAAACCAAAAACTTGAAATCGCTCTATGAGTTT
ACAGGTAAATATATTTACCACAGCtcattattttgaaagaatattacata
tttcttttttttcttcgataAATAACGTAATCTTCTGATTTTCAGGTCAG
ATCTTGAAGACGGGCACGTCAGCGGAGATCTTGATGGTCAAACAAGCGTT
ATGCGAGCGCATGAAAACAGCAGTGACGTCAGAACAAACCTATGAACCCG
AGGTGGACGATCAGATCAGCTGTGACACGAACGTTGACTCCATTGCATCT
gccatcaaaagttatggtcaATTCTCAACACAAGGAGAAGTGTTCTTGAA
ATGCTTTGTTTTGGGAAGTGTGACCACTGCTGTCAAAGGAATGTCCACTC
AATTGACTTTACTGATCAAGTAAGTTTGACCATGGAACATGTTTGAGTTC
ATCTTCTTTAATGGATTTTTTATTACGAAGAGATTTACAGCCCGAAATAC
GACCCGTGACGACAAATAACAACCATATTCAAAGGGTGTCCAATAAGGAT
TTACTTAGGGAAGATGGCTAGGgacatttcattgaaaattagAGTTGGCT
AAAACAGTGCATCATATTTCACCATAGGAACCAACTAGGACAAGAAGCTT
CCGTCTCTAAAGAAGACATTGAAGTTGAAATGAAGACTCCAGACCTCGGT
ATAATCATGCCCGAAGTCAGGGAGAAAACATCCAGCACTTTCACGTTGAA
CTTTCGAACCTATTCTTTGGGTATACACCAGGTACTTAACAATTCCTACA
CCGTACCTACACCGTACCTACACCGTACATAttctttttcataaaataaC
ATATTGAACAACCAAtccatttcatttcatttcatttcattcttCATTTA
GTTGCACATCAAACTGAAAGCGAAACACATCACGGGAAGTCCCTTCTCCA
TTAACGTCATCAACAGTTCGGAGAAACAGAGACGTGGTAGTTCAGACAGC
ACTTCATCCAACGATAAAAGTCCTTCTCATCTTtccaccaattactccaa
accATTGAGCCTTGAAATCAACGACCATCCTTCATACAAAAGATCAGATT
CGAATGAAGGTGCTAAAAACTTATACTCCAACGATCGACACTCTCCGAAT
CCTCCCAATAATTACTATCTCGACAAAAATATGAACCCAACAAATGGTAT
AGATGACCCGAATTCTTCGTACAGAAACCTGCTTCTCAATACGGCTGAAC
TGTCCGCTAAATATGTTTTCTCTATCGGACAGCGGGGaacaaatttcgcg
gaatttcaCGGTGTTTTTGGCGTTGCTAGCGACCACACAAACAAACGTAT
CATAGCAACGGATTGCCATAACAACCGTATCCAAGTGTTCAATGAAGAAG
GGAAATTTCTCTTTGCTTTTGGACAGAAGGGAAATAACGACGGTGAATTT
CAACACCCGACGGGCGTGGGCGTTGGTCCGAATGGTGAAATTGTGGTTTG
TGAAAGACTGAAAGGCAGAATACAGGTATTAATCCCttttatctttttga
aaaagtctaAAGAAAGGATTCGCAGCAATGTTTAGTACTGACGTCATTGC
GTtgcattttttttctcctttggCAGGTCTTCAATTCTGAGGGTCATTTC
CAAAGACGATTTATTTTGAACCAATTGAAAGCGTCGACGCTAACAGTGGA
CATCGGAGGGAGGATCATCATTGCAGATTACACCAGTTGTTGTATTTATA
TCCTCGACCCAATACTTGGTGAGTTCAatgaaacaattttccattAGTTT
TCTAGCGCATTGATTTAAGTTGGTcacaaaacagaaaagaaaaccAATAT
GCACCTaagcttctgctcatcctctaacgaaaaaaaatttataaaaactt
ttctaTAGATTTGCTAAGTATTTCGAAAATATTTGCACCAATTTATAGAA
AAAAGttcatgttttatttttcagagcGTTGGTCGAAATTCGGACATTTT
GGACAAAGTGAGGGTGAATTGCAATACCCTGGTTACGTAGCAACCGATTT
GAAAGGCAACATCTTCGTCTCTGATATGAACAGCAACAAAGTACAGGTCT
GTATATTAAAGATTAAATCAAGTGTAGCTTATTTAACTACTAGCTCACTG
AATCAATTTTAAGTGAAATGTTTATCAATTTAATGAATACTAGTAGGATA
TGCGAGGAAGCTTTATGAATTTATAAACCAAAAACAACCCTCCATTGTTT
CAGATGTACGATTCGGACAGCATCTTTATTCGAAGTTTCGGACACAAAGG
AGACGGGAACGGAGAATTTCACCATCCTACCGGAATCGCTATCGACATCA
AAGGTCGGCTGGTTGTTGCCGATCGGGATAATCATCGGATTCAGGTCATT
CAAACATCAGGCGAGTACATCACAAAGTTCGGATCGAAATCGGAGCAAGG
AGGCGATCTGAGCGATTTGCACGGTGTGACGGTGCTCTCTAACGGAAATA
TCGCAGCAGCTGATCTGAAGAATAACAAGATTGTGGTGTTTACTTTGCCT
CATACCACGGACCCTGTCATGATCTAGTTTTATTTTGTCTCGTGCCTTGG
TCTACTTGGTTCAGAGTACCAGAATAATCTTTGCTTAGAACAGAGAGGAA
AACAATATGTAAATAGTCATAAATTTGATTAACATAATTATTTTTGGGTG
TAAAATGAAAACTGTATTAAAAGTTAGAGATTGAAATGTTAATTAATAGA
TAA

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_044059	XLOC_044059	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_58	supercontig	scaffold_58:705377..710479 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.0142724	0.0165717	0.0162128	0.129879	0.011233	7.5918	8.0851	5.12211	4.43034	4.66022	4.48768	4.04484	2.70513	0.402451	0.541227	3.35394	3.55793	8.92959	8.74834	3.2032	3.70724	2.32833	2.68695	5.61537	4.45628	11.9167	9.37853	0.643703	0.421397

Blast

[Close]

BLAST of TCONS_00070822 vs. Swiss-Prot (Human)
Match: TRIM2 (Tripartite motif-containing protein 2 OS=Homo sapiens GN=TRIM2 PE=1 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 2.986e-48
Identity = 118/455 (25.93%), Postives = 215/455 (47.25%), Query Frame = 1

Query: 1060 GMSTQLTLLIKNQLGQEASVSKEDIEVEMKTPDLGIIMPEVREKTSSTFTLNFRTYSLGIHQLHIKLKAKHITGSPFSINVINSSEKQRRGXXXXXXXXXXXXXHLSTNYSKPLSLEINDHPSYKRSDSNEGAKNLYSNDRHSPNPPNNYYLDKNMNPTNGIDDPNSSYRNLLLNTAELSAKYVFSIGQRGTNFAEFHGVFGVASDHTNKRIIATDCHNNRIQVFNEEGKFLFAFGQKGNNDGEFQHPTGVGVGPNGEIVVCERLKGRIQVFNSEGHFQRRFILNQLKAST-LTVDIGGRIIIADYTSCCIYILDPILERWSKFGHFGQSEGELQYPGYVATDLKGNIFVSDMNSNKVQMYDSDSIFIRSFGHKGDGNGEFHHPTGIAIDIKGRLVVADRDNHRIQVIQTSGEYITKFGSKSEQGGDLSDLHGVTVLSNGNIAAADLKNNKIVVF 2421
            G    +T+  K++ G+        +  E+ TPD  +   E+ +  + T+   +     G   L ++L  +HI GSPF + VI S++                                        S + EG K      R   +P + +   K       +  P S Y         +    +F +G +G N  EF  + GVA+  TN +I+  D +N  +Q+F+ +G+F   FG +G + G+ Q PTGV V P+G+I++ +     + +F+S+G F+ +    +L     ++VD  G II+ D  +CC++I  P  +  ++FG  G  + +   P + A +    I ++D +++ V++++ +  F+  FG  G+GNG+F+ PTG+A+D  G ++VAD  N RIQV   SG +++   + ++    L    G+ + S+G++  AD  N+   V+
Sbjct:  341 GQPMSVTITTKDKDGELCKTGNAYLTAELSTPDGSVADGEILDNKNGTYEFLYTVQKEGDFTLSLRLYDQHIRGSPFKLKVIRSADV---------------------------------------SPTTEGVK------RRVKSPGSGHVKQK------AVKRPASMYSTGKRKENPIEDDLIFRVGTKGRNKGEFTNLQGVAAS-TNGKILIADSNNQCVQIFSNDGQFKSRFGIRGRSPGQLQRPTGVAVHPSGDIIIADYDNKWVSIFSSDGKFKTKIGSGKLMGPKGVSVDRNGHIIVVDNKACCVFIFQPNGKIVTRFGSRGNGDRQFAGPHFAAVNSNNEIIITDFHNHSVKVFNQEGEFMLKFGSNGEGNGQFNAPTGVAVDSNGNIIVADWGNSRIQVFDGSGSFLSYINTSAD---PLYGPQGLALTSDGHVVVADSGNHCFKVY 740

The following BLAST results are available for this feature:

BLAST of TCONS_00070822 vs. Swiss-Prot (Human)

BLAST of TCONS_00070822 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
TRIM2	2.986e-48	25.93	Tripartite motif-containing protein 2 OS=Homo sapi...	[more]

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TCONS_00070822 (transcript) - C. hemisphaerica