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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00070828 ID=TCONS_00070828|Name=TCONS_00070828|organism=Clytia hemisphaerica|type=transcript|length=3379bp
ATCAACCATGGTGAAAGGAGGCCGTAAAATACGCCCCGACCAAATCGAGC
CATACACATTGACACCTCCGTCATGTAATGGAAAAGGACCGCCCATGTTT
GCATCACCCACCAAAAACAATGAGATGATTCATTTTGAATGCACTACTGA
GGAAATGAAACGACAGTTCGAGCCACCCTGTACAAAAAGTTCAGCCGAGA
AGCAACAAAAGTGTGGGAAACTTGGAAAGCCTATTCAAATACAAGCCAAT
CACTTTCCTTTGGATATCAAGATTCCAAATGGCGATATTTACCATTATGA
CGTGACATTTATCCTTCCAAACAAGGCAGAGGTGAAAAAATCACATAAAT
CTCTATTGATCAAAGTCATTGAAAAAGTTAAAGAACAATATCAGAGTACT
CTTGGTAATccaaattctattgtttttgacGGACTGAAAAATCTGTATTC
GAATAGAGAATTGTTCCAGGGACTCTTTGAAGGAACTGTGAAAATAAACG
ATGGTAAAGATTCACCCCGCTTTATTGAAGTTGGTGTCAGACTCAAAAGG
GTTGGCAATAGTTTGCCAGTGAACTATATGGTGAGTCAATACCTCCAATC
AGGAAGGAAAGGAGCTGCTATTCATGATTCGTTGCAAGTTTTGAATATCA
TTCTTGGAATGACACCTTTGTTACATTACGAATGTGTTGGACGGACACAT
TTCAACCCATGTACAGGAAATGGATCCATCCTGGAGATCGGTCATGGTAA
ATCGATCTGGGTTGGCACCTTTCAATCTGCTCGAATCGGATGGAAACCAT
TTCTCAACATTGCCGTCGCCAACCGACCTGCATATAACCAGCAGCCTGTC
ATCCAGTTTTTAATGTCAGTCCTCAGCAGCAAAGATCCCAGATGTCTGTC
TAATCTTCACCCGAAAGATAAAACGAAATTAGATCGTGAAATCAAACAAT
TAAAAGTTCGCTTTACCAGACCGGATGGACAGAAAAGGGAATATCGTGTG
AACAAACTCGTCGACAGTGCAGAACGTTTGTCTCTGGATATCNATAAAAC
GAAATTAGATCGTGAAATCAAACAGTTAAAAGTTCGCTTTACCAGACCGG
ATGGACAGAAAAGGGAATATCGTGTGAACAAACTCGTCGACAGTGCAGAA
CGTTTATCTCTGGATATGGATTCGCCAGATGGAGGAAAGCGAAAGACCAC
AATTCAACAgtacttcaaaaatcaatacaAATGCAACTTAAAATATCCTT
CGTTACCATGCGCTCATGTTGGTCCTCCCAAGGGAACAATTTACCTTCCA
ATCGAGTTTTTGGAGATCAAGAAACAACTAGCTCCAACCACCAAAAAGTT
ATCCGAGGACGAAACTGCCGAAATGATCAAACAAACAGCTCTGCAACCCA
ACATCAGAAAACAACGTATCCAAAGAAACTTAAGAGAACTGAAAAACTCT
TTTAAAGATGACCCATACGCTAAAGCCTTCGGTTTAGAGATCAACGACAA
AATGGCGGAAATGCGTGGACGAGTCTTGGATGCTCCCTCCATCAAGTACA
AGAAAGGTAGCAAAGTCAGCGAGTGTCGACACACGGGTGGTAAATGGAAT
ATGACCAGCCAAGATCGAGTCGATCCCTTGAAATTTCTAGAAACCGTATC
CCTCGGCAGATGGGGAGTTTTAGATCTTGCCGGACTTCCACCGCAACAAA
AGCAAGCTTTCGTGGATGCTGTGGCTATTGAAGCAGGACAACGAGGTCAT
CACATCGACTATCCGATCTACGATAAAGCTGACGTTAACAACCTCGAAGA
TGTCGAGAAAAGTTTCAAACGGCTTTGCATGCATATTCAACAACAGTGCA
ACGGAAAACCCCAGCTTGTCCTTGTCATTGCCCCCTTCAAAGGAAACATC
TATCCATGCATCAAATACATCGGTGACGCAGTAATGAACGTTCCAACGCA
ATTCGTCCTCAAGAAAAACGTCCTCGGTAAGCCAAGACAAGGACCCAGCG
GTCAAACCATCCACAACTTGTGTTTGAAGTTGAACGCAAAAACAGGTGGT
ACCAATCACGGTTTGTTCGTTCGACCTCCAGTGATGAAGAAACCGATCAT
TATCCTAGGTGCTGACGTCACTCATTCGGCGCCCAGCGAGTTCAAGAAGC
CTTCCATTGCAGCTATGGTGGGATCGTGCAACCCCGAAGCATCAGAATAT
TTCTGTGAAGTTCGCGTTCAAAAACAAGGCAAGGTAATGGAGGAGATCGA
AAAGACAGAGGAGATGGTCAAAAGTCTCCTTCAACGATTCAACGAGAAGA
CGCGCGTCAAACCGTTGAAGATCATCTACTATCGAGACGGTGTCAGTGAA
GGACAGTTCATTTCAGTATTGAATCACGAATTGACAGCCATTCGAAAAGC
ATGCCTCAGTCTTCATCCTGACTACAAACCTGAAGTCACCTTCTTTGTCG
CACAGAAACGTCACAACACACGATTGTTTCCTTCAGATCCCAAAGATGGC
TTCGGTAAAGCGAGGAACGTACCTCCTGGAACAGTCATCGATACTATGAT
CACTCATCCCACCGAAACTGACTTCTTCTTGGCATCCCATGAGGGAATCC
AGGGTACCACCAAACCAACGCACTACCATTTGCTTTGGGACGATAGCAAC
TTCTCCAATGACGAACTTCAAAGTCTGACCTACAATCTATGTCATCTTTG
CTCTCGCTGTGAACGAAGCGTTAGTTACCCAGCACCAACGTACTATGCGC
ATTTGGCAGCCGCCCGTGCTCGTGAACATCACAATGCTCTGTTGCTTCGT
AACCGAAATCGTATTGATTTTATTCCAAAGGAGGACTTGAGAAAAATCGA
AAAGTGTactttattaaattattttatgtaaaaatctaattagaaagcca
attttattttatcttaatttttttaatcaatttcacGAGCTTGACTATCT
CAATCATTAAATAAGGGAGCAGCCTCGTCCGTTTTCAGTCCCCAAAATTT
GCGGAGCATGATCATTTTGAACCGACATTTTATGGAATCGAGTTGAGTTT
TTTGATGAGATTCAgtttcttttaattttattttattagaaaagtattat
tttattcttaaacatttttattttcagtaaaATTAATTGTAAGTGTTTCA
AGGCCGGTCCTTTCAATCGCTACTCAGTGGGAAACGGCACATATTTTTAG
TGCAGTCATTGCAAATCATAATTCATTCATTAGTCATCAACTTTTACAGT
GATTTTGGAATTTCCCTCTGTCCAAATTATTTGCAGACGTCAACTGAAAA
GCCCACTCATATTAGTCTCTTTGTAATTATCAAATTTTatattcaaaaat
gaaaaataaggtATTTAATTATTGTAAAG Run BLAST on NCBI transcript from alignment at scaffold_58:745990..750271+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00070828 ID=TCONS_00070828|Name=TCONS_00070828|organism=Clytia hemisphaerica|type=transcript|length=4282bp|location=Sequence derived from alignment at scaffold_58:745990..750271+ (Clytia hemisphaerica)
ATCAACCATGGTGAAAGGAGGCCGTAAAATACGCCCCGACCAAATCGAGC
CATACACATTGACACCTCCGTCATGTAATGGAAAAGGACCGCCCATGTTT
GTATCACCCACCAAAAACAATGAGATCATTCATTTTGAATGCACTACTGA
GGAAATGAAACGACAGTTCGAGCCACCCTGTACAAAAAGTTCAGCCGAGA
AGCAACAAAAGTGTGGGAAACTTGGAAAGCCTATTCAAATACAAGCCAAT
CACTTTCCTTTGGATATCAAGATTCCAAATGGCGATATTTACCATTATGA
CGTGACATTTATCCNCTAGGGCTAATTCAATTCTCAAtctaatttgattt
tgttggtGTTAGTAATGGTATAACTTTTTCGGCCAATCATTATTATATAT
TACCTATTTTCCTAAATTGCCATTAAAGTCATACAATTGGAATTACTAAC
ACTAACAAAGTCTAACTAGATTGAAAATTGAAGTAGGGAACATAAAATTG
TAATGGAAAGATAAATAAATCTTGATATTGACAAAACATGAGCTGTTAGA
AACGAACAACTGAGGAAATCTGTGAGTAATTTATGTTTGAGTTGTGCCTT
AATAAACTAACCTCTGAGTTTCCCAGAAAAATATCTTCAATTGAACAGGC
TCTAAAAGCTTAATTAGCATTTTAAatcattgtcaatttttctttcttta
gatATCAACCATGGTGAAAGGAGGCCGTAAAATACGCCCCGACCAAATCG
AGCCATACACATTGACACCTCCGTCATGTAATGGAAAAGGACCGCCCATG
TTTGCATCACCCACCAAAAACAATGAGATGATTCATTTTGAATGCACTAC
TGAGGAAATGAAACGACAGTTCGAGCCACCCTGTACAAAAAGTTCAGCCG
AGAAGCAACAAAAGTGTGGGAAACTTGGAAAGCCTATTCAAATACAAGCC
AATCACTTTCCTTTGGATATCAAGATTCCAAATGGCGATATTTACCATTA
TGACGTGACATTTATCCTTCCAAACAAGGCAGAGGTGAAAAAATCACATA
AATCTCTATTGATCAAAGTCATTGAAAAAGTTAAAGAACAATATCAGAGT
ACTCTTGGTAATccaaattctattgtttttgacGGACTGAAAAATCTGTA
TTCGAATAGAGAATTGTTCCAGGGACTCTTTGAAGGAACTGTGAAAATAA
ACGATGGTAAAGATTCACCCCGCTTTATTGAAGTTGGTGTCAGACTCAAA
AGGGTTGGCAATAGTTTGCCAGTGAACTATATGGTGAGTCAATACCTCCA
ATCAGGAAGGAAAGGAGCTGCTATTCATGATTCGTTGCAAGTTTTGAATA
TCATTCTTGGAATGACACCTTTGTTACATTACGAATGTGTTGGACGGACA
CATTTCAACCCATGTACAGGAAATGGATCCATCCTGGAGATCGGTCATGG
TAAATCGATCTGGGTTGGCACCTTTCAATCTGCTCGAATCGGATGGAAAC
CATTTCTCAACATTGCCGTCGCCAACCGACCTGCATATAACCAGCAGCCT
GTCATCCAGTTTTTAATGTCAGTCCTCAGCAGCAAAGATCCCAGATGTCT
GTCTAATCTTCACCCGAAAGATAAAACGAAATTAGATCGTGAAATCAAAC
AATTAAAAGTTCGCTTTACCAGACCGGATGGACAGAAAAGGGAATATCGT
GTGAACAAACTCGTCGACAGTGCAGAACGTTTGTCTCTGGATATCNATAA
AACGAAATTAGATCGTGAAATCAAACAGTTAAAAGTTCGCTTTACCAGAC
CGGATGGACAGAAAAGGGAATATCGTGTGAACAAACTCGTCGACAGTGCA
GAACGTTTATCTCTGGATATGGATTCGCCAGATGGAGGAAAGCGAAAGAC
CACAATTCAACAgtacttcaaaaatcaatacaAATGCAACTTAAAATATC
CTTCGTTACCATGCGCTCATGTTGGTCCTCCCAAGGGAACAATTTACCTT
CCAATCGAGTTTTTGGAGATCAAGAAACAACTAGCTCCAACCACCAAAAA
GTTATCCGAGGACGAAACTGCCGAAATGATCAAACAAACAGCTCTGCAAC
CCAACATCAGAAAACAACGTATCCAAAGAAACTTAAGAGAACTGAAAAAC
TCTTTTAAAGATGACCCATACGCTAAAGCCTTCGGTTTAGAGATCAACGA
CAAAATGGCGGAAATGCGTGGACGAGTCTTGGATGCTCCCTCCATCAAGT
ACAAGAAAGGTAGCAAAGTCAGCGAGTGTCGACACACGGGTGGTAAATGG
AATATGACCAGCCAAGATCGAGTCGATCCCTTGAAATTTCTAGAAACCGT
ATCCCTCGGCAGATGGGGAGTTTTAGATCTTGCCGGACTTCCACCGCAAC
AAAAGCAAGCTTTCGTGGATGCTGTGGCTATTGAAGCAGGACAACGAGGT
CATCACATCGACTATCCGATCTACGATAAAGCTGACGTTAACAACCTCGA
AGATGTCGAGAAAAGTTTCAAACGGCTTTGCATGCATATTCAACAACAGT
GCAACGGAAAACCCCAGCTTGTCCTTGTCATTGCCCCCTTCAAAGGAAAC
ATCTATCCATGCATCAAATACATCGGTGACGCAGTAATGAACGTTCCAAC
GCAATTCGTCCTCAAGAAAAACGTCCTCGGTAAGCCAAGACAAGGACCCA
GCGGTCAAACCATCCACAACTTGTGTTTGAAGTTGAACGCAAAAACAGGT
GGTACCAATCACGGTTTGTTCGTTCGACCTCCAGTGATGAAGAAACCGAT
CATTATCCTAGGTGCTGACGTCACTCATTCGGCGCCCAGCGAGTTCAAGA
AGCCTTCCATTGCAGCTATGGTGGGATCGTGCAACCCCGAAGCATCAGAA
TATTTCTGTGAAGTTCGCGTTCAAAAACAAGGCAAGGTAATGGAGGAGAT
CGAAAAGACAGAGGAGATGGTCAAAAGTCTCCTTCAACGATTCAACGAGA
AGACGCGCGTCAAACCGTTGAAGATCATCTACTATCGAGACGGTGTCAGT
GAAGGACAGTTCATTTCAGTATTGAATCACGAATTGACAGCCATTCGAAA
AGCATGCCTCAGTCTTCATCCTGACTACAAACCTGAAGTCACCTTCTTTG
TCGCACAGAAACGTCACAACACACGATTGTTTCCTTCAGATCCCAAAGAT
GGCTTCGGTAAAGCGAGGAACGTACCTCCTGGAACAGTCATCGATACTAT
GATCACTCATCCCACCGAAACTGACTTCTTCTTGGCATCCCATGAGGGAA
TCCAGGTAGGTCATTCTTTGTTAATTTTATAGCTAGTGAGCACTGTGTAC
TCTATTCATCTATTGACTTGCACAAGGTTTTCTTGTCACTCAAAAGTCTT
TCAGTTACCAAAAATTGAGGAAGTTTTTCACAGATagacattttcttttt
ctttttttatgaatgAATGGTTTGTTGTATGGATGTTCAATGTTATCTTT
TTCAGGGTACCACCAAACCAACGCACTACCATTTGCTTTGGGACGATAGC
AACTTCTCCAATGACGAACTTCAAAGTCTGACCTACAATCTATGTCATCT
TTGCTCTCGCTGTGAACGAAGCGTTAGTTACCCAGCACCAACGTACTATG
CGCATTTGGCAGCCGCCCGTGCTCGTGAACATCACAATGCTCTGTTGCTT
CGTAACCGAAATCGTATTGATTTTATTCCAAAGGAGGACTTGAGAAAAAT
CGAAAAGTGTactttattaaattattttatgtaaaaatctaattagaaag
ccaattttattttatcttaatttttttaatcaatttcacGAGCTTGACTA
TCTCAATCATTAAATAAGGGAGCAGCCTCGTCCGTTTTCAGTCCCCAAAA
TTTGCGGAGCATGATCATTTTGAACCGACATTTTATGGAATCGAGTTGAG
TTTTTTGATGAGATTCAgtttcttttaattttattttattagaaaagtat
tattttattcttaaacatttttattttcagtaaaATTAATTGTAAGTGTT
TCAAGGCCGGTCCTTTCAATCGCTACTCAGTGGGAAACGGCACATATTTT
TAGTGCAGTCATTGCAAATCATAATTCATTCATTAGTCATCAACTTTTAC
AGTGATTTTGGAATTTCCCTCTGTCCAAATTATTTGCAGACGTCAACTGA
AAAGCCCACTCATATTAGTCTCTTTGTAATTATCAAATTTTatattcaaa
aatgaaaaataaggtATTTAATTATTGTAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
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| TCONS_00070828-exon-scaffold_58-1491911889:745990..746009 | TCONS_00070828-exon-scaffold_58-1491911889:745990..746009 | Clytia hemisphaerica | exon |
| TCONS_00070828-exon-scaffold_58-1510915933:745990..746009 | TCONS_00070828-exon-scaffold_58-1510915933:745990..746009 | Clytia hemisphaerica | exon |
| TCONS_00070828-exon-scaffold_58-1575043694:745990..746009 | TCONS_00070828-exon-scaffold_58-1575043694:745990..746009 | Clytia hemisphaerica | exon |
| TCONS_00070828-exon-scaffold_58-1491911889:746713..749294 | TCONS_00070828-exon-scaffold_58-1491911889:746713..749294 | Clytia hemisphaerica | exon |
| TCONS_00070828-exon-scaffold_58-1510915933:746713..749294 | TCONS_00070828-exon-scaffold_58-1510915933:746713..749294 | Clytia hemisphaerica | exon |
| TCONS_00070828-exon-scaffold_58-1575043694:746713..749294 | TCONS_00070828-exon-scaffold_58-1575043694:746713..749294 | Clytia hemisphaerica | exon |
| TCONS_00070828-exon-scaffold_58-1491911889:749495..750271 | TCONS_00070828-exon-scaffold_58-1491911889:749495..750271 | Clytia hemisphaerica | exon |
| TCONS_00070828-exon-scaffold_58-1510915933:749495..750271 | TCONS_00070828-exon-scaffold_58-1510915933:749495..750271 | Clytia hemisphaerica | exon |
| TCONS_00070828-exon-scaffold_58-1575043694:749495..750271 | TCONS_00070828-exon-scaffold_58-1575043694:749495..750271 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_58 | supercontig | scaffold_58:745990..750271 + |
Blast
BLAST of TCONS_00070828 vs. Swiss-Prot (Human)
Match: AGO2 (Protein argonaute-2 OS=Homo sapiens GN=AGO2 PE=1 SV=3) HSP 1 Score: 490.345 bits (1261), Expect = 6.647e-156 Identity = 315/853 (36.93%), Postives = 450/853 (52.75%), Query Frame = 2
Query: 215 GKLGKPIQIQANHFPLDIKIPNGDIYHYDVTFILPNKAEVKKSHKSLLIKVIEKVKEQYQSTLGNPNSIVFDGLKNLYSNRELFQGLFEGTVKIN---DGKDSPRFIEVGVRLKRVGNSLPVNYMVSQYLQSGRKGAAIHDSLQVLNIILGMTPLLHYECVGRTHFNPCTGNGSILEIGHGKSIWVGTFQSARIG-WKPFLNIAVANRPAYNQQPVIQFLMSVLSSKDPRCLSNLHPKDKTKLDREIKQLKVRFTRPDGQKREYRVNKLVDSAERLSLDIXKTKLDREIKQLKVRFTRPDGQKREYRV-NKLVDSAERLSLDMDSPDGGKRKTTIQQYFKNQYKCNLKYPSLPCAHVGPPKGTIYLPIEFLEIKKQLAPTTKKLSEDETAEMIKQTALQPNIRKQRIQRNLRELKNSFKDDPYAKAFGLEINDKMAEMRGRVLDAPSIKYKKGSKVSECRHTGGKWNMTSQDRVDPLKFLETVSLGRWGVLDLAGLPPQQKQAFVDAVAIEAGQRGHHID--YPIYDKADVNNLEDVEKSFKRLCMHIQQQCNGKPQLVLVIAPFKGNIYPCIKYIGDAVMNVPTQFVLKKNVLGKPRQGPSGQTIHNLCLKLNAKTGGTNHGLFV--RPPVMKKPIIILGADVTHSAPSEFKKPSIAAMVGSCNPEASEYFCEVRVQKQGKVMEEIEKTEEMVKSLLQRFNEKTRVKPLKIIYYRDGVSEGQFISVLNHELTAIRKACLSLHPDYKPEVTFFVAQKRHNTRLFPSDPKDGFGKARNVPPGTVIDTMITHPTETDFFLASHEGIQGTTKPTHYHLLWDDSNFSNDELQSLTYNLCHLCSRCERSVSYPAPTYY 2746
G G+ I++QAN F +DI P DIYHY++ I P K + + + ++E + + +++ + VFDG KNLY+ L G + +++ +GKD R +V ++ V+ SGR + +++Q L++++ P + Y VGR+ F G + L G G+ +W G QS R WK LNI V+ Y QPVI+F+ VL K ++ ++ D + K +EIK LKV T KR+YRV N A + + G + T+ QYFK+++K L+YP LPC VG + YLP+E I KKL++++T+ MI+ TA R++ I + +R SF DPY + FG+ + D+M ++ GRVL PSI Y G + G W+M ++ +F + + W + A PQ++ V + R D PI + S + + H++ G QLV+VI P K +Y +K +GD V+ + TQ V KNV Q + QT+ NLCLK+N K GG N+ L RPPV ++P+I LGADVTH + KKPSIAA+VGS + + Y VRVQ+ + E I+ MV+ LL +F + TR KP +II+YRDGVSEGQF VL+HEL AIR+AC+ L DY+P +TF V QKRH+TRLF +D + GK+ N+P GT +DT ITHPTE DF+L SH GIQGT++P+HYH+LWDD+ FS+DELQ LTY LCH RC RSVS PAP YY
Sbjct: 32 GTSGRTIKLQANFFEMDI--PKIDIYHYELD-IKPEKCPRRVNRE-----IVEHMVQHFKTQIFGDRKPVFDGRKNLYTAMPLPIGRDKVELEVTLPGEGKD--RIFKVSIKWVSC-----VSLQALHDALSGRLPSVPFETIQALDVVMRHLPSMRYTPVGRSFFTASEGCSNPL--GGGREVWFGFHQSVRPSLWKMMLNIDVSATAFYKAQPVIEFVCEVLDFKS-----------------------------------------IEEQQKPLTDSQRVKFTKEIKGLKVEITHCGQMKRKYRVCNVTRRPASHQTFPLQQESGQTVECTVAQYFKDRHKLVLRYPHLPCLQVGQEQKHTYLPLEVCNIVAG-QRCIKKLTDNQTSTMIRATARSAPDRQEEISKLMRS--ASFNTDPYVREFGIMVKDEMTDVTGRVLQPPSILYG-GRNKAIATPVQGVWDMRNK------QFHTGIEIKVWAI---ACFAPQRQCTEVHLKSFTEQLRKISRDAGMPIQGQPCFCKYAQGADSVEPMFRHLKNTYAGL-QLVVVILPGKTPVYAEVKRVGDTVLGMATQCVQMKNV-----QRTTPQTLSNLCLKINVKLGGVNNILLPQGRPPVFQQPVIFLGADVTHPPAGDGKKPSIAAVVGSMDAHPNRYCATVRVQQHRQ--EIIQDLAAMVRELLIQFYKSTRFKPTRIIFYRDGVSEGQFQQVLHHELLAIREACIKLEKDYQPGITFIVVQKRHHTRLFCTDKNERVGKSGNIPAGTTVDTKITHPTEFDFYLCSHAGIQGTSRPSHYHVLWDDNRFSSDELQILTYQLCHTYVRCTRSVSIPAPAYY 805
The following BLAST results are available for this feature:
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