TCONS_00070848 (transcript) - C. hemisphaerica

Overview
NameTCONS_00070848
Unique NameTCONS_00070848
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length4258

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00070848 ID=TCONS_00070848|Name=TCONS_00070848|organism=Clytia hemisphaerica|type=transcript|length=4258bp
GTGCAAAAAtacatgtttgttttttctttttttcttttttaaaaagccCG
ATTTTCTTACCCTCGCATGCACAGTACCAAAAAGTGGAATATATCCTAAA
CCAAAATTGatccaaagtcaaaatttgtcatgagCATTTCTCTGACATTG
AGAAACCATGTATTTCTTAGAGAAGACGCGACTATTTATATTTCGTCAGA
AATCGAGGTTTTTatcgattttcggctaaatagcctatataaaatagtct
aaatagcctatgataggctaatcagcctatgataggctaatttgaaggtg
ttcttgactgaTAATGGTGCTCTTTTCTGACGCATGCGCATTTGTCATTT
CACGCAAGCTCTTGTGAAGTTCACATCGACCTGGCTAATGTGGAAGTCAG
AATTTGTACTTTGTCATTATCAATCTTGAAATACCTGTATAATCTTGGCC
AAGACAACCTCCAATGCGATCCAAATCTATCGATGTAAACCTCTCTGGAT
ACTTGTTCTCGGTATTTACGCACGGAACGAAATGGGAAGCCCATCATCAG
AGTTTGAAACTCCTGTAAAGAAGCATAAAAGTAAGAAGcccaaaaaggac
aaaaaaaagaagaaaagtaagCAACGCAGTAAAGATAAACATTCTTCAGA
AAGCTCGAGTGCTAATTTCATTCAACCAACCTATGAAAGTCTATCCTCAG
ATGGTGAACTTGGAGAGacatttgatgattttgaacAATACAAAAGGAAC
AAACAGATGAGACATGATTCCTTTGATTCATCCCCTCCGCAaccaaaaaa
gaagaaaaaggatAAGAAGTCCCATAAATCTAAAAGGAAAAACTCAGCAA
ATAATGTAGACTTTGATAATTCCTCATCAAAATATGCTGGTGGATTCTCA
TCTTCATCGTCATGGAATAATTCAAAGAGTTTAAATCGTAAAAATTCTTT
AGGCTCACCAGAAGAATTTGGAGGGTATCCAAAGGAAACCTACAAGGAAG
AATACTATTCTCGCTCTCCAAAGCATCGTTTTAGAAACGACAGCCCAAGT
AGGAGTCGCCATAGAAGTTCGCGTGATAATTCTGTGTCGCCCTATCTCAA
GAGGAATGCTTCGCCTTATGAGGGTGGATCACCCATATCTATAAACTCTA
AATCTCCAAATTACTCTCCTTACAACAGACGCTCGCCTAGAAAGCGATCA
CCATCACCTAGTTATCGAAAGAGATCAAGTAGTCATCGTAAACATTCAAG
TCACACTTCTCACAGCAGCTCCCACAAAAAGCACATCAAAGACATTTCCA
GGTCACCCTCATTTTCTCCTAGTCGATCTCCAAAGCTTCCGATGCAAAGG
AAAAGGACACACACTGGATCCTCAAAGCAACATCGACATGAAAGAGACAA
TTTAGCTAATAATTCATTTAATTCTGGTACAAACTTTCTTCAAAGGAATA
GTAGTAATAGCACCGGGAGTTTCCCAATGAACAATAACAATGGTGCTGGT
TTACCTCCTCCCATGCAACAGATGAGTATGAGTCAATTCTTTTTACGTCA
AGCTCAGCAGGCTCAACAACAAGTTCAACAGCAACATCAAAATCTAATCA
GAAATAATAATATCCCTCCACAGGGACCTGTTATGAGCAAAAACAACCAA
GCAAACAATATGCCTCCTCTGGATAAAAATCTAACTGTGAAAAGTCTACC
ACCTTCAACACTCCAGACAGAGATAAAATCATCTAAACAACCACCGCCAC
CCTTAATCAGTCCACCTCCGAAACCTGCACtaccaccacctccaccacaa
ACGTCACTTCCACCTCCGCCACCACCAGATGAAATGAAAGCACGCGGGGA
TGAGGCACCGCCCCTCCCACCCCTTCCGTTACCACCAGTTATTCCAGAGA
TTAGTGATATTTCTCCTGAACCTATCAGCAACAGTGATAATGATTTTACA
AACAAAGACATTGAGAAACCAGTAAATGGGAGTCAATCAAATTCTGTTGA
AAGCAGCAGGCCTGTTTCCAGAAATTCCTTTGATAGATCGGTAACAAATT
CACCAGATGCAGACACAGAATGGGGAGAGCGATGTGTTGATATGTTTGAA
ATCATGAAAATTGTTGGGGAGGGAACTTATGGGCAGGTCTATAAGGCTAA
AGATAAGATTACAGaggaGCTTGTTGCATTGAAGAAAGTTCGTCTTGACA
AAGAGAAGTATGGATTTCCGATCACTGCAATTCGTGAAATCAAGATTCTA
CGGCAACTTACACACAAAAGTATTGTTAATCTGAAGGAAATTGTTACAGA
TAAACAAAGTGCTGCTGATTTTCGCAAAGATAAAGGTGCATTTTATCTGG
TATTTGAATATTGTGATCATGACTTGATGGGTATTTTGGACTCTGGCTTT
GTCAAATTCACTAATGAATATATTGCGTCAATGATGAAGCAGTTACTGGG
AGGATTAAATTATTGTCACAAGAAGAATTTTCTCCACAGGGATATTAAAT
GCTCAAACATCCTCATGAGTAACAAGGGTGAAATCAAGCTTGCAGATTTT
GGCTTGGCTCGACTTTTTGATTCAGAAAATGAAGGacgTCAATACACAAA
TAGAGTGATTACTTTGTGGTATCGTCCTCCTGAACTTTTGCTTGGTGAAG
AAAGATATGGACCAGCTATTGATGTCTGGAGTTGTGGATGTATCCTTGGT
GAGCTGTTTAAAAGGAAGCCTATGTTTGTGGCAAACACAGAGCAAACCCA
GCTAGAGCAAATCAGTCGGGTATGTGGAGCACCAACACCTGCAGTGTGGC
CTGATGTTATTCATCTTCCGTACTTTCACAACATCAAGCCAAGAAAACAA
TATCGAAGGAGACTTCTAGAAGAATACGCCAGTTTACCAAAAGAAGCGTT
AGATTTGCTGGATCGAATGCTAACGATGGATCCCTCCAGGAGATCCTCTT
GTGAGGATGCACTGAAACATGAATTCCTTCGAGATATCATCCCCGAAAAT
GTCGAACCTCCAAAaTTTCCTGAATGGCAAGATTGTCATgagatgtggag
caagaagaGGAAACGAGAAGCGCGTGATAGCGCTGCTGGGCGTCCGCCAT
CGACCGCTAGCAAAGTGCCCAACGTATCTGACCCTCCATCTTTAACGGCA
AACACAAGTAACACACTCTTCAAGCCAGTGAAATCAAACACAAACATAAC
GAACTCTACAATGAATGACACTCTTTCAAAACCTCAAGAACATTTACCGC
CACCACCTCCACTCCCAACCATTATGGGTGCGCCATCGCTGGGTGCTGGC
AAGAGTTCTGGTGATTCTGGTTTTCATGGTACACCACCCAGCACAACCAG
TATTAAAGATGGTGGACAAACTACGAAAAACTTTACAAACCGAGGTATAA
TCAACCCCACTAGTTTCAATTCGACCAAGAAAGTTGAAAAGTTGTCTGAT
TACTCTTCGTCTAAGAAACCTGTTGGAGCATCTGGCTTAAGTGCTGATGT
CAAGTTGAATCATTTCATTAGTAAACCCATCGTGGATAATGGGTCCACGG
CACCTTCAACCAGTGGTACTGGACCGCCGCGTATGAAATGGCCCACCTAA
GTTTCATTGTTCTTGTATAAATGtccatttcttttttatagaGATCTTTT
TTCTAATTAGCAAAAGTTTGGTTTTTTAATAAACCTGGTTTTGTTTTCTG
GCTTTTTTTAACGATGATATTATCCTTTAGATTATTATtagatttcttta
tttttttgaagtAATTATTAAGTGCTTAATGGCCTCGAGTTTATAATGTA
AAATAGGAAGGAAGCCTTTAAATGAACGCTCTTTTCTTGTGTTTTGGATG
TAACAAAATGAAAGAACGTCAATATGgagaaaactttcattttgttCACC
CTATGATATCTCATGCTTATTCCCCGCCCTCGAACAACGAGACCTTCTCA
GAACGACTCCGACAAACTTTTGGTGTATTTCATCTTGGTAATGGGTCCTC
AATGGATAAATTCACTGTAGAGTTCTTTCTATTCGTTTACCTTCAAGAGA
TTATCTTTTTGTGGTAATATCTTTCTTTCAATCCTTTAGTGTCTTAGTAG
GGGGCCAACCATTAGGATCTGTACTATATTTTGTTGGACGCAACTCAACG
GGATTGGCGTGAATTGGACCCGGAAAAGGTTTAATGGCCAAAAAACTGGC
TAGCCCCCAGAATGGGTAAAAATTGACGATTTTCAATTGGATGGTTGGTA
CACTACAG
Run BLAST on NCBI

transcript from alignment at scaffold_58:859177..870658+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00070848 ID=TCONS_00070848|Name=TCONS_00070848|organism=Clytia hemisphaerica|type=transcript|length=11482bp|location=Sequence derived from alignment at scaffold_58:859177..870658+ (Clytia hemisphaerica)
GTGCAAAAAtacatgtttgttttttctttttttcttttttaaaaagccCG
ATTTTCTTACCCTCGCATGCACAGTACCAAAAAGTGGAATATATCCTAAA
CCAAAATTGatccaaagtcaaaatttgtcatgagCATTTCTCTGACATTG
AGAAACCATGTATTTCTTAGAGAAGACGCGACTATTTATATTTCGTCAGA
AATCGAGGTTTTTatcgattttcggctaaatagcctatataaaatagtct
aaatagcctatgataggctaatcagcctatgataggctaatttgaaggtg
ttcttgactgaTAATGGTGCTCTTTTCTGACGCATGCGCATTTGTCATTT
CACGCAAGCTCTTGTGAAGTTCACATCGACCTGGCTAATGTGGAAGTCAG
AATTTGTACTTTGTCATTATCAATCTTGAAATACCTGTATAATCTTGGCC
AAGACAACCTCCAATGCGATCCAAATCTATCGATGTAAACCTCTCTGGAT
ACTTGTTCTCGGTATTTACGCACGGAACGAAATGGGAAGCCCATCATCAG
AGTTTGAAACTCCTGTAAAGAAGCATAAAAGTAAGAAGcccaaaaaggac
aaaaaaaagaagaaaagtaagCAACGCAGTAAAGATAAACATTCTTCAGA
AAGCTCGAGTGCTAATTTCATTCAACCAACCTATGAAAGTCTATCCTCAG
ATGGTGAACTTGGAGAGacatttgatgattttgaacAATACAAAAGGAAC
AAACAGATGAGACATGATTCCTTTGATTCATCCCCTCCGCAaccaaaaaa
gaagaaaaaggatAAGAAGTCCCATAAATCTAAAAGGAAAAACTCAGCAA
ATAATGTAGACTTTGATAATTCCTCATCAAAATATGCTGGTGGATTCTCA
TCTTCATCGTCATGGAATAATTCAAAGAGTTTAAATCGTAAAAATTCTTT
AGGCTCACCAGAAGAATTTGGAGGGTATCCAAAGGAAACCTACAAGGAAG
AATACTATTCTCGCTCTCCAAAGCATCGTTTTAGAAACGACAGCCCAAGT
AGGAGTCGCCATAGAAGTTCGCGTGATAATTCTGTGTCGCCCTATCTCAA
GAGGAATGCTTCGCCTTATGAGGGTGGATCACCCATATCTATAAACTCTA
AATCTCCAAATTACTCTCCTTACAACAGACGCTCGCCTAGAAAGCGATCA
CCATCACCTAGTTATCGAAAGAGATCAAGTAGTCATCGTAAACATTCAAG
TCACACTTCTCACAGCAGCTCCCACAAAAAGCACATCAAAGACATTTCCA
GGTCACCCTCATTTTCTCCTAGTCGATCTCCAAAGCTTCCGATGCAAAGG
AAAAGGACACACACTGGATCCTCAAAGCAACATCGACATGAAAGAGACAA
TTTAGCTAATAATTCATTTAATTCTGGTACAAACTTTCTTCAAAGGAATA
GTAGTAATAGCACCGGGAGTTTCCCAATGAACAATAACAATGGTGCTGGT
TTACCTCCTCCCATGCAACAGATGAGTATGAGTCAATTCTTTTTACGTCA
AGCTCAGCAGGCTCAACAACAAGTTCAACAGCAACATCAAAATCTAATCA
GAAATAATAATATCCCTCCACAGGGACCTGTTATGAGCAAAAACAACCAA
GCAAACAATATGCCTCCTCTGGATAAAAATCTAACTGTGAAAAGTCTACC
ACCTTCAACACTCCAGACAGAGATAAAATCATCTAAACAACCACCGCCAC
CCTTAATCAGTCCACCTCCGAAACCTGCACtaccaccacctccaccacaa
ACGTCACTTCCACCTCCGCCACCACCAGATGAAATGAAAGCACGCGGGGA
TGAGGCACCGCCCCTCCCACCCCTTCCGTTACCACCAGTTATTCCAGAGA
TTAGTGATATTTCTCCTGAACCTATCAGCAACAGTGATAATGATTTTACA
AACAAAGACATTGAGAAACCAGTAAATGGGAGTCAATCAAATTCTGTTGA
AAGCAGCAGGCCTGTTTCCAGAAATTCCTTTGATAGATCGGTAACAAATT
CACCAGATGCAGACACAGAATGGGGAGAGCGATGTGTTGATATGTTTGAA
ATCATGAAAATTGTTGGGGAGGGAACTTATGGGCAGGTCTATAAGGCTAA
AGATAAGATTACAGGTTGGTCTTACTTCAAAATCATttgaaattgagaaa
tttaagcTTATAGGTAAACTGCATTTATAAGCAACCACTTAAGTTAAGTT
CATTTCATTTTAAGCTGCAGGAAAATGTATTATTTCATTTACATGTGGAT
ACTTCACCAATCATGCAATAATTTATCTCAGCTGTCAAATAATATCATTA
TTGGCAAATTCATTCTTCAATGATAGTagattttttcaacatttcgtGAT
ATACTATGAGTTAGTCTAATATGGACCACCCTATTTATTCTGCCTCCCTT
TTAGCAACAAAAATAATTAGAAGGAAGAAATCGCTAAAAATTAGAATAGA
CTCCGCAAATTTAAGTCACAATCAGTGATTCCCCCTTTTTCATCTCTCCT
CCTGTGAAAGGGTGATGAAATTAGCAGAGGGTGGTCAATCTTAGATAGAG
TCACACAGAGTCACAGTATACTTATCACAAGATGAGAAATTCGAAATGAC
CATGCCAGTTTAGAAGAAGTCTCTTACAACCTTGACTTGCTTCTAAGCTT
TTGGTTTCAATATTTTAATAGTATGGCTTTTATTGGAACGACATATTTGA
GAGAACAGGAAATGAATTATTCAGTAACATAGCCATACTTAGTCATACCA
TAGCCATCACTGAAAATGTCTTAAATGTTGATGAATTAACTTTAAATGAA
ATGTCAAATTATTGTCTTTCTGGATTCAACTAATatccaatttttttgat
tttcttaggTTTTAAATTAACTCGCCAATTAAtctaaaaagatcaaaatc
gacaagggaaagaaaaaacatgagagtatgtatttttaaattttaataaa
tttttatttttttattttttcacttttcaatacAATAGTTGGCTATATTG
AGTTAGTTCATCATCATTGACAGGCTTAGGGTGTATTTAATGTAAATTGC
TAAATTCTATAAGATATGCTTGTGATGTCTAGGAAGCATCTCAAACTACA
GCAATCAGTAAGTTGCATTCACAAGTCAAAAATAAGCCCGAAACAACTGA
GTAATGTACACTCACAAATAGTTGGGTNTGCTGCTAAATTCTATAAGATA
TGCTTGTGATGTCTAGGAAGCATCTCAAACTACAGCAATCAGTAAGTTGC
ATTCACAAGTCAAAAATAAGCCCGAAACAACTGAGTAATGTACACTCACA
AATAGTTGGGTTGttcagaaaaaatgaataacCTGTCGAATCGAAATTAT
AAAACACTTAAATCTCATAaatagaatattttcaaaattttatcacttTG
GATCAAATTTCCTGTAGACTcagggggggtcagtactaaaatgtcggaca
tatatgagtactaaaagggttttcaagaatttcttgcataccaccaccta
tttttcgaaaatgttattttagtacacatgtactaaaattattttgagca
atttaacatagataccacccatttttgcccttttacgggTTTAAAgttac
caaaatggggtcattgttacaaacctagtcgaatttagcgcatcaatctg
caaaataatataattttattactaaactgtgctaaactgtacatgaaaat
atttttgaaaaatatttaaaaaattggaaaaattctgaaagatttctgaa
gattttttcgaaaattcctgaaaaaaaaaatcaaattttttccaaaattg
ttaaaaaaatNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNattgttaaaaaaatgctccattttggctgattttag
aacaaaatactaagatttttcaaaaatttctttaagggaccacccttttt
ggtattttagtacacaccacgtcactaaatgtcatgatgtctgagatttt
agtaccgacacccccccccctggtagactaatttttgtgaatttttgcaa
tttttgcaaaattaaagtccttgcaaaaaaaattgaaaatcagcactttt
gcaaaaaagcctctattaaaatgaaagaaattaggttAAAAATAGGCCGA
TTCACATGcaaaaatgggctcttccagaaaaaatctgttcatggggggtg
gaggatgaattgtccaggggtattgaaaaaaataccaaaaaattgcaatg
tccagggggtaaattccaatgtccaggggtaatttttttgtccacggggt
tgatttgatgtttgtccaggggtataacccgtgtccaggggggttaaaaa
tcaaaatgtccaggggtaattcatgaaaaaaatagtatatcATCCActcc
ccatgaacggattttttctggaagagcccaatgtagcaaaatctataaaa
aaattattgctaatatttcacaaaaaatgattcAAGGGGAAAATGGACAG
CAAGGAAGAACTTAAAGCTGAgtaataaaatttctaactATAAAGTCAAA
GAGTTTAGGAATTACTGTATCACTCAGTCATGTTCAACCTGAGTATATTT
TAGCAACTAAATCATTCTACCATGATTACACTACATAAAATAACTCCATA
CTAATTTGGCCCAAGAGgaacatcaaactttttcaacttttggaGGATTT
TACAGGGTGAGCTATGCAAAGGTTTTATTTCTAGAAGATTGAGGTcagaa
aacagcaaaaaataaaataaacattttttgttctttcagaaaattggaaa
aaaggtgGGGAAAATCCACGGGGCAATAAGGGGAAAAGCTGCTTCAAAAA
GCGAGGGGAGATtgtaaaagttttgattttttttattgtgatTAAAAAGA
TAATGTGAATGGGAGCAGCAAAGagtacaaacaaacaaaaaatagagGGG
ATTttaagcttggtactcacttgtgcaaaaaattgCGTTTAAGTGCGCca
aacacgttttttctttcTAGTGAGTAAGTTCACTAAACGCACTTAAGCGC
CCTCAGACGCACATATACGCACATAAACACCTTGATTTTGCTAGGCGCAC
TTAAACGCaaatatcaaaaagttttgataTTTCGATGCAATcatcaaatt
cttttgaaatttgaagagAGAGGGGAATTTTTCATAGCATTTAAGTATGC
CTTACTCCTTTTTCCCTCTCTTTCATTTGAATCACTTTGTAGTGAGTACA
TCTGAGTACATACATGTTtttaagcataacgcttataagcatatgaaggc
tcagatttgcagaattcctaagcataacatgagcatatatgtcagcctag
aatatttttcaagtggtcatttttatctgtttaaaaaggtttggtagagg
tcaagtaaaaaatgaGACATTTCACGGCTAGCTAACATTCCACTGcttcc
aaaatctgaacaaatttgtacaaaatttctaaaatgtcattaaaaacttg
gctcgggtgaatcataagcatgattcttaagcatataataagcataaact
atgcctagatactttgagaacttaagcatacacgagcctgaccaaggggc
atacacttgcttataaaaaaaaacaacatgtaaATGGCGTTTAAGTGCGC
CTAACTGATAAACGCACTTAAACGcaattttttgcacaagtgagtaccaa
gctttaATAAgagataattttttaattttcaaatgggGACCCAACCAGCC
AGTTGAATAAAATCAAAGTACTGGTtaacaaaaaggaaagaaaatatgAA
TTGTACCATGCACGCGATGaaactgatgaagaaaatgaGTTTATCTTAta
tagaaaacaaaaacatcagaAAACAATGTTGatcggtgaaaaagaatgca
attattatttgatttttcctggcatgtttcagaaaaaaaagttactacaa
tcatggtcgtaatatttgagaaaaaagggaaacccaccgggaagttttga
aaccacaatcgatttgtaagtgctctaaagtaggtttgaagggtagaatt
ttaactctgagttttaacactagacttaagacaTAGGACCTTAGAATCTC
AGGATCcgaaagttcaaaaatagtccaataaggctcagaatatagcctgg
aagtctgccaacccctcccaaattgaaatattcgattaagttaaagagaN
NGGTCAGCCAAACTTTattactcaaaacaaaaatgacaatttatatgcaa
aatataaaaattaccTCCCTTTATGAGGTAAAGCACTGGAGCCAAACTTT
TTATTTCCCCTTATTACCAAGAAAAGAgcaaattgattgattgattgttt
gaatttttttctttttcagaggaGCTTGTTGCATTGAAGAAAGTTCGTCT
TGACAAAGAGAAGTATGGATTTCCGATCACTGCAATTCGTGAAATCAAGA
TTCTACGGCAACTTACACACAAAAGTATTGTTAATCTGAAGGAAATTGTT
ACAGATAAACAAAGTGCTGCTGATTTTCGCAAAGATAAAGGTATTAGGCT
ACAGAATTTAAGCCATACTCCTTGGAAGGTAGGGCAGCATCTCTTTCGGG
CATTTTAGTGATTGGTTTCAGTTTGAAGATTAAGATACTTCATTAGATTA
ACCTGAAACCCGCTCATAGAAATTGTTGAAAATCAGTTTGTCATTGTTAA
CTGTTTTGAATTAAACTGTAACTTAAAATTTCATCGTCAAGCTGCGTTTG
CAGAGTCTTGATTGCCTTTGACTTAATATTTTGTATAACCTTCAACTCTC
AGGTGCATTTTATCTGGTATTTGAATATTGTGATCATGACTTGATGGGTA
TTTTGGACTCTGGCTTTGTCAAATTCACTAATGAATATATTGCGTCAATG
ATGAAGCAGTTACTGGGAGGATTAAATTATTGTCACAAGAAGAATTTTCT
CCACAGGGATATTAAATGCTCAAACATCCTCATGAGTAACAAGTAAGTAA
ACAACACTAAAGTGGCTAAATGATCACGTTGACACTTTTTGCAAatcaaa
aatagatttttcacTTAATGTCCTTGACTTTCCCGAGTAGAGTTTTGAAA
AACTCCtgatttgacatttttcaaaggaCCAGAAAGGACTCAAAATGGCC
ACAattcgcaaaaattggaaagattaATCCACatgaaatttaatccactt
aaaGTAGTtaaaaggaatctttttttgacaAACAATTTTATTTGGATTGA
GATTTAGTTGAGAAGTGTGATTTTATCTTACTCAATTTTGAATGGCAACT
GACACATTCTTCTTAAATGAAGAAATAGCTAACCATCAAAAGATTTTAAC
TTCTTACTTGCTTATTCTTCAGGGGTGAAATCAAGCTTGCAGATTTTGGC
TTGGCTCGACTTTTTGATTCAGAAAATGAAGGGTAAGATGGGATAAATTA
ATTCAATTATCATTCCATTGTGTCTGCAGGGGGGGTACTGACCCATAACC
Atgtggtggtgtctatttttgcatttaaaacaagttagtacccggtacta
ctttgggggtgggggtgtgtatttttcactcttcaagcaagtacagaata
ctatttgggtactttttcacagaattttgctgtttttcaataaaaaaagt
agtttattgtaatattttgacttttttcaatatCTTTTGGAATTGTGCTC
TGATCACAATATTCACTTCAAGAAATTTAAATCTTAGACGTCATCAATGt
gaaaaggtgtcaaaaaataCAGTTCATAATCTTgaaatccttttagtacc
atgcagtactaaaataccaaaaaggctGAAAAGTGGTATACCAAAAAGGC
TGAAAAGGTGGTATCCAGactaaaatttgagaatttgTCTTGTGAATTGG
TACTAAAATTAgtaatttcatcattttttgaatctatttcagaattttag
taatttttcaagaaagattttaaaaattctcatttgaagaaaattcgGGC
ACTAAAATACCACCTTTCTAAAATGGGGTGGTGGTGTGCTAGAAATATTC
GAAAACCCTTTTAGTATTGTattatatgtctgagattttagtaacacccc
cccccctgccaGTGATGAACTTTGATGTCaaaatgtcccaaaaactttAT
GTCCATGGTGTACTTCTCTAAATTGGGGTAGTggtatgtaaaaaaaaatt
gcttgaaGCTTTTTAATTACACATGTCTTAGATTTTAGTACTGGCACCGC
CAAACactgttataaaaaaaaaaagagttcaTCTACTTTAATTACTAAGT
ATTTACATGACTAAATGTTTGGAATTATGAATTCAATTTCTTGcaacttt
cttttttctttcagacgTCAATACACAAATAGAGTGATTACTTTGTGGTA
TCGTCCTCCTGAACTTTTGCTTGGTGAAGAAAGATATGGACCAGCTATTG
ATGTCTGGAGTTGTGGGTAAGAAGTCTGTTAATAAAGTGAATGGAAATTT
CGTTGCTTGTAATCTGACTTCACATTGATCTgttgcaaaatcaattttcg
gatcaagttttttcttgtttttaatttgaacaGTGTTGCAACATTTCCGT
CTATAACTATAGGTGAAAAAGTGATACAATTTCCGCTTTTCCATCCAGTA
AGAGAGTTTTTGGTCAAATGACCTATATAACATAGTTTCTACCCCTCcta
catttaggggggggggtcttgggttttgatgaaccaaaagcaagggagtg
ttaaaagtatgactttcctaaggggggttgTCAGTTAAAGGAGGatcttc
ttacctaagggggggtcttcttagataagggggggtcttcttagataagg
ggggggggtcttgttAGATAAGGgggatcttccttgaattatgactcttg
tacaatcgtttcatttatactgattttctaagggggtgtgaaattttaaa
tgaaatgaaagggggggtcttacctaaggggggtcttgacccctctagaa
actatgatAACCATTTTAccaaagatattttgaaaacaactcTCCGTTTT
TCAGATGTATCCTTGGTGAGCTGTTTAAAAGGAAGCCTATGTTTGTGGCA
AACACAGAGCAAACCCAGCTAGAGCAAATCAGGTAAATATGTCTTCTTTC
TAACGTGAAATTCTTTGGTCAAAAAAGGTCAAGAGGAATTCTGTATCTTT
AAGATTTGGCAAAGGTGACCTGACTTCGAGATTCAAGCAAACAGAATGAA
attaatttctaaaaatatttagaTACACGACGCGATCTTTATTTTATAGT
GGAATATGGTAGCCATTTTTGAACAGCTAAGCAAATCAAACTTCTTTTAA
GAGTGATATTCATCCATGGATCCCATTGTCCCGgaataatattttcattt
tcattttttgttaagTCGGGTATGTGGAGCACCAACACCTGCAGTGTGGC
CTGATGTTATTCATCTTCCGTACTTTCACAACATCAAGCCAAGAAAACAA
TATCGAAGGAGACTTCTAGAAGAATACGCCAGGTTTGATACATGGATGTT
TAAGAAGACTCGTGATCCCCTCCCCAATGTTCTGTGCTTTATTTTCAACA
AGACAAAACTAGAATAGAATCGTCCCTTCGTTATTCATAATTTGTTCACA
ACACACATGTCAGCAAGGCATCTAACCAAACACGTACCAAAACTCAACAA
TTCTTATTTCTCCTTAGTTTACCAAAAGAAGCGTTAGATTTGCTGGATCG
AATGCTAACGATGGATCCCTCCAGGAGATCCTCTTGTGAGGATGCACTGA
AACATGAATTCCTTCGAGATATCATCCCCGAAAATGTCGAACCTCCAAAG
TAAGATTTCGCTTTTAAAAGGGTGCTTCAGCATTTGGATTTTGTGATAAC
TGCCAATACCCTTTGACAAAGAAAGTGTTCTATGAttatttcatcaattt
ttctccatttttaagtAGACAAAGAAGGAAAATTCATTATTCAACTTTCT
CCTGGTTTATGATATACAGGCAGCGTCTCCTGGTTTATGATATACATGCA
GCGTAACAGCCATTTTGAAacctaatttttctttgtagaTTTCCTGAATG
GCAAGATTGTCATgagatgtggagcaagaagaGGAAACGAGAAGCGCGTG
ATAGCGCTGCTGGGCGTCCGCCATCGACCGCTAGCAAAGTGCCCAACGTA
TCTGACCCTCCATCTTTAACGGCAAACACAAGTAACACACTCTTCAAGCC
AGTGAAATCAAACACAAACATAACGAACTCTACAATGAATGACACTCTTT
CAAAACCTCAAGAACATTTACCGCCACCACCTCCACTCCCAACCATTATG
GGTGCGCCATCGCTGGGTGCTGGCAAGAGTTCTGGTGATTCTGGTTTTCA
TGGTACACCACCCAGCACAACCAGTATTAAAGATGGTGGACAAACTACGA
AAAACTTTACAAACCGAGGTATAATCAACCCCACTAGTTTCAATTCGACC
AAGAAAGTTGAAAAGTTGTCTGATTACTCTTCGTCTAAGAAACCTGTTGG
AGCATCTGGCTTAAGTGCTGATGTCAAGTTGAATCATTTCATTAGTAAAC
CCATCGTGGATAATGGGTCCACGGCACCTTCAACCAGTGGTACTGGACCG
CCGCGTATGAAATGGCCCACCTAAGTTTCATTGTTCTTGTATAAATGtcc
atttcttttttatagaGATCTTTTTTCTAATTAGCAAAAGTTTGGTTTTT
TAATAAACCTGGTTTTGTTTTCTGGCTTTTTTTAACGATGATATTATCCT
TTAGATTATTATtagatttctttatttttttgaagtAATTATTAAGTGCT
TAATGGCCTCGAGTTTATAATGTAAAATAGGAAGGAAGCCTTTAAATGAA
CGCTCTTTTCTTGTGTTTTGGATGTAACAAAATGAAAGAACGTCAATATG
gagaaaactttcattttgttCACCCTATGATATCTCATGCTTATTCCCCG
CCCTCGAACAACGAGACCTTCTCAGAACGACTCCGACAAACTTTTGGTGT
ATTTCATCTTGGTAATGGGTCCTCAATGGATAAATTCACTGTAGAGTTCT
TTCTATTCGTTTACCTTCAAGAGATTATCTTTTTGTGGTAATATCTTTCT
TTCAATCCTTTAGTGTCTTAGTAGGGGGCCAACCATTAGGATCTGTACTA
TATTTTGTTGGACGCAACTCAACGGGATTGGCGTGAATTGGACCCGGAAA
AGGTTTAATGGCCAAAAAACTGGCTAGCCCCCAGAATGGGTAAAAATTGA
CGATTTTCAATTGGATGGTTGGTACACTACAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044067XLOC_044067Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00070848-exon-scaffold_58-1491911889:859177..861340TCONS_00070848-exon-scaffold_58-1491911889:859177..861340Clytia hemisphaericaexon
TCONS_00070848-exon-scaffold_58-1510915933:859177..861340TCONS_00070848-exon-scaffold_58-1510915933:859177..861340Clytia hemisphaericaexon
TCONS_00070848-exon-scaffold_58-1575043694:859177..861340TCONS_00070848-exon-scaffold_58-1575043694:859177..861340Clytia hemisphaericaexon
TCONS_00070848-exon-scaffold_58-1491911889:865696..865866TCONS_00070848-exon-scaffold_58-1491911889:865696..865866Clytia hemisphaericaexon
TCONS_00070848-exon-scaffold_58-1510915933:865696..865866TCONS_00070848-exon-scaffold_58-1510915933:865696..865866Clytia hemisphaericaexon
TCONS_00070848-exon-scaffold_58-1575043694:865696..865866TCONS_00070848-exon-scaffold_58-1575043694:865696..865866Clytia hemisphaericaexon
TCONS_00070848-exon-scaffold_58-1491911889:866129..866318TCONS_00070848-exon-scaffold_58-1491911889:866129..866318Clytia hemisphaericaexon
TCONS_00070848-exon-scaffold_58-1510915933:866129..866318TCONS_00070848-exon-scaffold_58-1510915933:866129..866318Clytia hemisphaericaexon
TCONS_00070848-exon-scaffold_58-1575043694:866129..866318TCONS_00070848-exon-scaffold_58-1575043694:866129..866318Clytia hemisphaericaexon
TCONS_00070848-exon-scaffold_58-1491911889:866699..866758TCONS_00070848-exon-scaffold_58-1491911889:866699..866758Clytia hemisphaericaexon
TCONS_00070848-exon-scaffold_58-1510915933:866699..866758TCONS_00070848-exon-scaffold_58-1510915933:866699..866758Clytia hemisphaericaexon
TCONS_00070848-exon-scaffold_58-1575043694:866699..866758TCONS_00070848-exon-scaffold_58-1575043694:866699..866758Clytia hemisphaericaexon
TCONS_00070848-exon-scaffold_58-1491911889:867691..867792TCONS_00070848-exon-scaffold_58-1491911889:867691..867792Clytia hemisphaericaexon
TCONS_00070848-exon-scaffold_58-1510915933:867691..867792TCONS_00070848-exon-scaffold_58-1510915933:867691..867792Clytia hemisphaericaexon
TCONS_00070848-exon-scaffold_58-1575043694:867691..867792TCONS_00070848-exon-scaffold_58-1575043694:867691..867792Clytia hemisphaericaexon
TCONS_00070848-exon-scaffold_58-1491911889:868381..868458TCONS_00070848-exon-scaffold_58-1491911889:868381..868458Clytia hemisphaericaexon
TCONS_00070848-exon-scaffold_58-1510915933:868381..868458TCONS_00070848-exon-scaffold_58-1510915933:868381..868458Clytia hemisphaericaexon
TCONS_00070848-exon-scaffold_58-1575043694:868381..868458TCONS_00070848-exon-scaffold_58-1575043694:868381..868458Clytia hemisphaericaexon
TCONS_00070848-exon-scaffold_58-1491911889:868742..868858TCONS_00070848-exon-scaffold_58-1491911889:868742..868858Clytia hemisphaericaexon
TCONS_00070848-exon-scaffold_58-1510915933:868742..868858TCONS_00070848-exon-scaffold_58-1510915933:868742..868858Clytia hemisphaericaexon
TCONS_00070848-exon-scaffold_58-1575043694:868742..868858TCONS_00070848-exon-scaffold_58-1575043694:868742..868858Clytia hemisphaericaexon
TCONS_00070848-exon-scaffold_58-1491911889:869044..869175TCONS_00070848-exon-scaffold_58-1491911889:869044..869175Clytia hemisphaericaexon
TCONS_00070848-exon-scaffold_58-1510915933:869044..869175TCONS_00070848-exon-scaffold_58-1510915933:869044..869175Clytia hemisphaericaexon
TCONS_00070848-exon-scaffold_58-1575043694:869044..869175TCONS_00070848-exon-scaffold_58-1575043694:869044..869175Clytia hemisphaericaexon
TCONS_00070848-exon-scaffold_58-1491911889:869415..870658TCONS_00070848-exon-scaffold_58-1491911889:869415..870658Clytia hemisphaericaexon
TCONS_00070848-exon-scaffold_58-1510915933:869415..870658TCONS_00070848-exon-scaffold_58-1510915933:869415..870658Clytia hemisphaericaexon
TCONS_00070848-exon-scaffold_58-1575043694:869415..870658TCONS_00070848-exon-scaffold_58-1575043694:869415..870658Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_58supercontigscaffold_58:859177..870658 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
21.7401	19.2011	13.1645	12.2133	26.883	17.7371	15.0363	21.6061	7.12186	12.7661	9.93891	5.62869	12.1565	10.247	8.02159	14.6491	15.337	10.8696	4.63337	8.74438	10.5353	13.1867	31.6521	29.428	13.1631	16.0978	15.5461	15.5212	33.2127	46.0124
Blast
[Close]
BLAST of TCONS_00070848 vs. Swiss-Prot (Human)
Match: CDK12 (Cyclin-dependent kinase 12 OS=Homo sapiens GN=CDK12 PE=1 SV=2)

HSP 1 Score: 552.362 bits (1422), Expect = 6.924e-170
Identity = 254/377 (67.37%), Postives = 301/377 (79.84%), Query Frame = 1 
Query: 2062 DTEWGERCVDMFEIMKIVGEGTYGQVYKAKDKITEELVALKKVRLDKEKYGFPITAIREIKILRQLTHKSIVNLKEIVTDKQSAADFRKDKGAFYLVFEYCDHDLMGILDSGFVKFTNEYIASMMKQLLGGLNYCHKKNFLHRDIKCSNILMSNKGEIKLADFGLARLFDSENEGRQYTNRVITLWYRPPELLLGEERYGPAIDVWSCGCILGELFKRKPMFVANTEQTQLEQISRVCGAPTPAVWPDVIHLPYFHNIKPRKQYRRRLLEEYASLPKEALDLLDRMLTMDPSRRSSCEDALKHEFLRDIIPENVEPPKFPEWQDCHEMWSKKRKREARDSAAGRPPSTASKVPNVSDPPSLTA---NTSNTLFKPVK 3183
            +++WG+RCVD F+I+ I+GEGTYGQVYKAKDK T ELVALKKVRLD EK GFPITAIREIKILRQL H+S+VN+KEIVTDKQ A DF+KDKGAFYLVFEY DHDLMG+L+SG V F+ ++I S MKQL+ GL YCHKKNFLHRDIKCSNIL++N G+IKLADFGLARL++SE E R YTN+VITLWYRPPELLLGEERY PAIDVWSCGCILGELF +KP+F AN E  QLE ISR+CG+P PAVWPDVI LPYF+ +KP+KQYRRRL EE++ +P  ALDLLD MLT+DPS+R + E  L+ +FL+D+    + PP  P WQDCHE+WSKKR+R+ +       P           PPS T+    TS T  +PVK
Sbjct:  716 ESDWGKRCVDKFDIIGIIGEGTYGQVYKAKDKDTGELVALKKVRLDNEKEGFPITAIREIKILRQLIHRSVVNMKEIVTDKQDALDFKKDKGAFYLVFEYMDHDLMGLLESGLVHFSEDHIKSFMKQLMEGLEYCHKKNFLHRDIKCSNILLNNSGQIKLADFGLARLYNSE-ESRPYTNKVITLWYRPPELLLGEERYTPAIDVWSCGCILGELFTKKPIFQANLELAQLELISRLCGSPCPAVWPDVIKLPYFNTMKPKKQYRRRLREEFSFIPSAALDLLDHMLTLDPSKRCTAEQTLQSDFLKDVELSKMAPPDLPHWQDCHELWSKKRRRQRQSGVVVEEP-----------PPSKTSRKETTSGTSTEPVK 1080
The following BLAST results are available for this feature:
BLAST of TCONS_00070848 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CDK126.924e-17067.37Cyclin-dependent kinase 12 OS=Homo sapiens GN=CDK1... [more]
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