TCONS_00070852 (transcript) - C. hemisphaerica

Overview
NameTCONS_00070852
Unique NameTCONS_00070852
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3176

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00070852 ID=TCONS_00070852|Name=TCONS_00070852|organism=Clytia hemisphaerica|type=transcript|length=3176bp
TGAACTTGAAGGGAAAACATTCTTTCGCGTTGAAAAATATCTCTTAAGAA
ACAAATTCACAAACAAATCTTGAAAACCGTGAAAACTTTCTCGCCATTCA
CTGCGAGATTTTGACAACTTTTATGCAATTTTTTTGTATCCTGCAAAGCC
ACTTGAATGGTTGTTTTGAGTGATGACCTTTTGTATATTTGTTATGCTGA
TTGCACAGCTGGCCGTAACCCATTTTACCGCCGCTGAGAACCACACACTC
GatcatgtgacgtcatcactcaTCTACGAAAAGAACGTCCGCCCGCTCTT
CTATCAACGTCAACCCGTCCATGTGAACGTCAGTTTTACCGTCATCGCGT
CCGACGATATTCAAGTTCAAACGGGGGACTTTCGTTTGGAGCTCAATTTT
ATGTTCGAATGGAATGACCCGCGCCTGAAACACGAGCATGGTTCGGGCAG
AAGTGCTATTGTCATCGACGACCCTGCTTTCATGGATGAGATCTGGCTTC
CGGACATTTTCGTCGTCAACGCAAAGAAGGTATCGGAGGACGCGCTCAAG
CATATCGAGATTTTCGAGAACGGCGATGTCCGATATATGCTCAGATTGAA
CATTCGAGCGTCGTGTCATATTGAACTACAGATGTTTCCTTGGGATATGC
AACGATGTCCACTCATCCTCAGAAGTTACAGTTACGCATCAGAGCATATT
CAACTACACTGGTCAGAGAAAGTCGCCACTAACCATTATGTCAACTCAAT
GTACAAACGTCCGATGGCTCAATTCAATTTGTCTGGGTTCGAATTATTGG
TGGACGAAATTGCTTTCGAGGGTGAAATGGTCAGTAGCGTCCATTCCGAT
GAGAACGAGAAATGGTCAGCATTGGAAGCAGTGTTTACCTTTTCACGGAT
GAGTGGTTTCTACCTCATTCAAACACTGGCACCCTCCAACATCTTGGTGG
TGTTATCTTGGGTCAACTTTCTCATCCAACCTGAAGACTCTCCTCCTCGT
GTCTTCTTGGGAATCTCCTGCATTCTCACCATGGCTGCCATTCAGAACTA
CATTAACTTCTCCTTGCCCAAGGTCAGCTATATCAAGATTATCGACGTTT
ACTGTTTGACGTGCTATTTTTTCGTTGTCTTGGTGATGGTTGAGTACGCT
ATCGTTTTACTGTTGAATGAGCGAGTCAAAAAGGAAAACATCTTCAGACA
AGAGAAAAAGATTCCCGCCAAAAAGAATTCCCGTATCCAACAGATCAGCT
CTTTCTGCAAATTTTGGCCCAACTTGAAGCTCTGTATCTATGGCAACCCG
TTTTGTATGCACGTGACCAAGCGAGCTGTCCGATTGGTGGATAAAGCCAG
TATGGTTCTCTTCCCGACAGCTTACATCCTTTTCAACATCATCTATTGGA
CACACGTCACACAGAAAATCGAAAGTACACAAAATCAAGATCATGGTTCA
TTGAAAGATTTCTTTTTGTGAGAAATGGATAAGACTCGATCAAGAGTTGG
GCTTGAATATATGATGGTTCAAGCAAACTAAACGAAAAGTAGGATCGTTC
CTTTAATTCTGTTTGAATGCAGAACAAGCTTGCAAAGGACGGCTTATAGC
GCCTTTTGTTTAGAACTTTCTTTAATGCAGCGTGTCCGGTTTGTCCGAAT
AAAAGCGGGCCAGGAATCCAGATGTGATTCAGTCAACAGTCTTTTTTTCG
TGATTATTCCAATTATCCTTCGTTCGCTCAGCTTGTATTCGATATCCAAA
AAAATCATGGCTGTGTTTAAGATAAGAAAGCTTCAAGTTATCTATGTCTT
AAAATGAAGCATTGCTATAATGATTTTACAATGCATCTTATGTCCCGCTT
TTTTTTTGGACAGACTTTGAAGCGGACACTAAGTGGCAGCGGAAGGAACA
GAAACTTCTGAACAATTTTGGATGGAGAAATTTGATTCAAACGTGACATT
TTTTCGTTGAGCGTAAAGTCAGGGATTTTGATAGATTTTATACTTATTCC
TCGGATCCGAAACTTATTCCTTTCCGATGATAATtcaattcgattttttt
aattgaaagacCCCTGCGTCACAGACCAGGCAAGGCCCTAACCCACTAGA
AAAGATTTGATCAGAATTTCATCTGCagagggaaaaataccctacaattt
cagccccactggaaaattggctTTGATTTCATCCGCATTCGGAATTCTTT
GTTAACAAtttcactccaaaaccatccacaatggaacaatagaattttat
ccccattgggacttCAATAGAATTTTTTTACTCCTGCTGTTAAAATTCCa
ccgaggctgtgagacaggggtgtatcgaAGCACCACTTTCTGTGGAAAAT
TTTTTGTCCTCGTTATAATGGAACTTGGTACTGTAAATATTTTCGCACAT
CTATGTTTtacatttgaaataaaaaaattctaccttacaaaaatacaaag
ctcTAATAATTTACATCGAGGAATAATCTCGATTACTTGTTAAATACAGG
GCAGAAAGAAAAGTTAGTTGTTCTGAAGAGCTCAATCGGTCCTGCAAGCT
TAAAATGAGATGGGAAAAAGNTGGAAGGAAAAGTTAGTTGTTCTGAAGAG
CTCAATCGGTCCTGTAAGCTCAAAATGAGAGGGGAAAAACCGGTCCAATG
GGGGTTTCTGCACCCATTCTATTGGGTTAGATCTTCATCAAATAGTTTTC
AATTTTGAGAGCTCCGTACCTCGAAAGTACAATATAATCAACCAGCTTCA
TTTCATAATGTCAATAGTTTGTTTTTCAAGAAGGTGATTCTCAACTTGCT
TGTAAACTTCAACTGCTTGTAAACTTCAACTGCTTGTAAACTTCCATTTG
TTCTGGCTTCATGTTTCAGCTCCTCCACGAACAAATATCACGTGATCTTC
AACTCTTTACGTGATTGGTTGATTGGAGGCTGAATTATTCAAAGAGTTTT
GTGAAAATTCAACCAGTTCTTTAGTCACGTGATCAATCATTTTCAACGAA
TGTGCGGACGTATGTGTAGCAACTTTCCCATTCTTCGAAGCTTTTGCCGC
CATATTGTCCAAAGGGATGGTGGTGTCGTCCGAAAATGCTTCTGAAACAC
ATCGCCTCTCTTCTTCACTCTTTTGTGTTGAATATCCTGTCAAAAATAGA
ATGGGATTTTTACGATCTTCTGCGAT
Run BLAST on NCBI

transcript from alignment at scaffold_58:876071..882240+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00070852 ID=TCONS_00070852|Name=TCONS_00070852|organism=Clytia hemisphaerica|type=transcript|length=6170bp|location=Sequence derived from alignment at scaffold_58:876071..882240+ (Clytia hemisphaerica)
TGAACTTGAAGGGAAAACATTCTTTCGCGTTGAAAAATATCTCTTAAGAA ACAAATTCACAAACAAATCTTGAAAACCGTGAAAACTTTCTCGCCATTCA CTGCGAGATTTTGACAACTTTTATGCAATTTTTTTGTATCCTGCAAAGCC ACTTGAATGGTTGTTTTGAGTGATGACCTTTTGTATATTTGTTATGCTGA TTGCACAGtaagtttttgttgaaaatcttGACCACAAAGTTCACTTAATC TTTTGGTTTGTCGGGagttgatgtttttgtttcaataagAGCTCTGCTAT GTCTCTCCTTTCttcattcatttttcatttctttcaaatcaCAAATTTCT CTCGCTTCTGATTTTTCACAGAGTAATATAACACTAGAGGCctctctttt tcaaaaactgacacttttttgaattgaaaatattttttggacgTACTATG TTTTGCATCGAGTATTATATTATGACGACTTGAAAATTTAGTTGGTACTT TTCTGAGCAGATAAAAATGGCACAATATCGCTTCATAAAGTTATGGTAAG ATAGTTATCGGGAAAACAAATTCATAGATTTGACGATTGGTCCAAAACTT TACTCGCAAATAAAAGCGCTTTTACGTGTTTTGCGGTATTAAATGATACT GGGGAACCTGAGACAGCTTTGAAGAACGTTTCTTGGCGAGCTgataaact tgaaaaattttattACACTTCATGACAAGGCAATCGTAAGATTAAGCCGA TGTTTCTTTATACCAACTGTGTGCATAAAGTACGTAAAAGCTTCTGCTTG TAAAAGTCCACCTGGATGATCAAGGAAAATATTGTCGTACAAATTGGGTA AAGGGGGGGGCTAACTGCCCTAGCATTTCATCGATGAATTCGCACGAAGG TTTTTGTGAATCTCTTTCATGAAAGCGTCCTTGGTGATATCTACAATATC ACGTAATCATTTcttgtaaatcaagttatcGATCGAGTAAAGTATAAAAA GTCATTCGTTTCATTTTAGGCTGGCCGTAACCCATTTTACCGCCGCTGAG AACCACACACTCGatcatgtgacgtcatcactcaTCTACGAAAAGAACGT CCGCCCGCTCTTCTATCAACGTAAGTTGATTTTTATCGATTATTTTTGTA CATCAAAAGCTATTATGCCTAAACTTTATTCTTCAAATGTATGCCTCAAT TTTTAATTGGgaaacaaagtcaaaattttcactCTTTTTCACGCTTTTTA TCAAgtagatattttttctttttcgtcgTAGGTCAACCCGTCCATGTGAA CGTCAGTTTTACCGTCATCGCGTCCGACGATATTCAAGTTCAAACGGGGG TAAGTTGAAGGCCTCTTCCTCTATCAAATCTTTTTACGCTACTAATACTA CTAACAACGGTGTTAAGAAATCCTGCACCCAACCGGAAATAGTCCATTAA AGCCGAGATTAAGTTGATTTATAAAGTATCTTAAGAAAGGGAGCTGCagt ttttttgcgaaaaatccTCCCGATTTTCTAATTTATCAAGACACAGGGTT AAGAAAGTTCCCTTCCTTGAGttaaaaatatcggtaaaagtACATAGGAG AAAATATTGTTTTCTCAACTTTAGGACTTTCGTTTGGAGCTCAATTTTAT GTTCGAATGGAATGACCCGCGCCTGAAACACGAGCATGGTTCGGGCAGAA GTGCTATTGTCATCGACGACCCTGCTTTCATGGATGAGATCTGGCTTCCG GACATTTTCGTCGTCAACGCAAAGAAGGTATCGGAGGACGCGCTCAAGCA TATCGAGATTTTCGAGAACGGCGATGTCCGATATATGCTCAGGTAACCAA TTATATTCGCGCATTCGTTAAATCATCATCACTGCTTTGACATCACATCA CTATTTAAAAAACCATTTCGTActtctttttttcaacattatttCTTTGA TCTCCAAAAATTTTGGTTCTTCTTACAAAAGTGTATATGATGTGTATGAA ACATAACTTGAAAAAGACACGTAAAAGTGGTCAAAATATCgtaaagaaaa atgtgttatgtttttattttgatttggttgcACATCACAAggctttttat gtttcactGATGTGTATTTATATATAAATACCTAACAACTCGAACAGATA CGGGAGGAAGGAATAAGGAATACTAAATATAACGCTCGGAATCAAAATGC TGAGATATGGCGTTTGGAAGTTTTATTCGATTCGGTTATACTTAGACTGG ATAATGCTTGGTCACAAGATAGTCGTCCTAAATAGATTATGGCAGACACT AAAATAAATAAGCTATTCTTAGATAAATAATATCTCATAAATATATTATG GTTTTATATAGGCTGAGGACTAGGCACTGACTTTCAATTTTACATCTTTc ctctttttgtttgtttctagATTGAACATTCGAGCGTCGTGTCATATTGA ACTACAGATGTTTCCTTGGGATATGCAACGATGTCCACTCATCCTCAGAA GTTGTAAGTTTCTTTGGCAATCTGCTGCTTTCACAAACACTTTATTGTTC AATGAGTGTGAACCTTATGCATTGGTTTTGCNCTCTTTACCCGCTTTCAC AAACACTTTATTGTTCAATGAGTCTTAACCTTATGCATGGGCTTTACATT TCTAACTTTTCCCAACTTTTGTCCCACAGACAGTTACGCATCAGAGCATA TTCAACTACACTGGTCAGAGAAAGTCGCCACTAACCATTATGTCAACTCA ATGTACAAACGTCCGATGGCTCAATTCAATTTGTCTGGGTTCGAATTATT GGTGGACGAAATTGCTTTCGAGGGTGAAATGGTCAGTAGCGTCCATTCCG ATGAGAACGGTGAGTCAAGGTGTTACTTGTGACGTGTACTATTGATACAC CAAGTGCCTCATCGCAAACCAAACGGCGGTAGATACTATGTTGTTTCTTG TTTAAAGTTTAAGATGACCTCTTGTGCTCTAGTATAATCTATAAATTGTA TGACTTTCCTATCttaaaacgtcagaaacaattGTTCACGTTTTGGAAAT TTACATTTTAAAGTTATGTCTTCGAACATTCGGTGATTATCTTCGGAGAA ATGGCCAGTATTTGGTCTAGCCTAGCCCATTATTTGGAGATTCCCTGTGT TTTGGGGTTATCAAATTAAGCCCTAAGTTATCCTTTCCAGAGAGATATTC GACATTGGGTCTAACCTGGGTTACTATTTGGAGATTCCCTGTTTTTTGGT TTATTAGATTAAGCCCTATCATTCGTTATCACATTATTTTAGAGAAATGG TCAGCATTGGAAGCAGTGTTTACCTTTTCACGGATGAGTGGTTTCTACCT CATTCAAACACTGGCACCCTCCAACATCTTGGTGGTGTTATCTTGGGTCA ACTTTCTCATCCAACCTGAAGACTCTCCTCCTCGTGTCTTCTTGGGAATC TCCTGCATTCTCACCATGGCTGCCATTCAGAACTACATTAACTTCTCCTT GCCCAAGGTACATATTGCTCTTTCTCATTTCTTCATCAACCCTCTTGGAC ATTATTCGAATAAGCTTTGCCCTCATTCAGCCAACCGCGGACTGACCGCT CTTGATATTCTTTTTCTAGAAATCTCTACCAATGTCTCTAAGTAAAAATT GGAGCATCGTTtgggatttttttcaaaatggacCTAAACattcagttttt cttttttcaaagaaaaccgATTCGAGCTGAATTAGACTTTTTAGTCTGAG GCTTATCTATCAGTAGAGCGAATGACGTCATACAAATTCAATTTCTAGGT CAGCTATATCAAGATTATCGACGTTTACTGTTTGACGTGCTATTTTTTCG TTGTCTTGGTGATGGTTGAGTACGCTATCGTTTTACTGTTGAATGAGCGA GTCAAAAAGGAAAACATCTTCAGACAAGAGAAAAAGGTCAGTTGAGGGCT AAAAGGTAGTCGGGTCAACATAATAAGACAGACATGGTCCATTTAAAGAA TACCCAAATCAATGATCCGTTTTAAAGTCATTTCTTTTTGCATCAAAAAT GTGTCCCTCATTATACAGTATCCCTCATAATAAACAAGGAAAAGCTTCGC ACTTTTTGCTACTGAATTCGAGGAAAAACATACGCCTAATGTTTTGTTCT TACTGTCATAAATTATCATAATCAGCCTAAAAAATCACCATCCTTCATCA ACAGATTCCCGCCAAAAAGAATTCCCGTATCCAACAGATCAGCTCTTTCT GCAAATTTTGGCCCAACTTGAAGCTCTGTATCTATGGCAACCCGTTTTGT ATGCACGTGACCAAGCGAGCTGTCCGATTGGTGGATAAAGCCAGTATGGT TCTCTTCCCGACAGCTTACATCCTTTTCAACATCATCTATTGGACACACG TCACACAGAAAATCGAAAGTACACAAAATCAAGATCATGGTTCATTGAAA GATTTCTTTTTGTGAGAAATGGATAAGACTCGATCAAGAGTTGGGCTTGA ATATATGATGGTTCAAGCAAACTAAACGAAAAGTAGGATCGTTCCTTTAA TTCTGTTTGAATGCAGAACAAGCTTGCAAAGGACGGCTTATAGCGCCTTT TGTTTAGAACTTTCTTTAATGCAGCGTGTCCGGTTTGTCCGAATAAAAGC GGGCCAGGAATCCAGATGTGATTCAGTCAACAGTCTTTTTTTCGTGATTA TTCCAATTATCCTTCGTTCGCTCAGCTTGTATTCGATATCCAAAAAAATC ATGGCTGTGTTTAAGATAAGAAAGCTTCAAGTTATCTATGTCTTAAAATG AAGCATTGCTATAATGATTTTACAATGCATCTTATGTCCCGCTTTTTTTT TGGACAGACTTTGAAGCGGACACTAAGTGGCAGCGGAAGGAACAGAAACT TCTGAACAATTTTGGATGGAGAAATTTGATTCAAACGTGACATTTTTTCG TTGAGCGTAAAGTCAGGGATTTTGATAGATTTTATACTTATTCCTCGGAT CCGAAACTTATTCCTTTCCGATGATAATtcaattcgatttttttaattga aagacCCCTGCGTCACAGACCAGGCAAGGCCCTAACCCACTAGAAAAGAT TTGATCAGAATTTCATCTGCagagggaaaaataccctacaatttcagccc cactggaaaattggctTTGATTTCATCCGCATTCGGAATTCTTTGTTAAC AAtttcactccaaaaccatccacaatggaacaatagaattttatccccat tgggacttCAATAGAATTTTTTTACTCCTGCTGTTAAAATTCCaccgagg ctgtgagacaggggtgtatcgaAGCACCACTTTCTGTGGAAAATTTTTTG TCCTCGTTATAATGGAACTTGGTACTGTAAATATTTTCGCACATCTATGT TTtacatttgaaataaaaaaattctaccttacaaaaatacaaagctcTAA TAATTTACATCGAGGAATAATCTCGATTACTTGTTAAATACAGGGCAGAA AGAAAAGTTAGTTGTTCTGAAGAGCTCAATCGGTCCTGCAAGCTTAAAAT GAGATGGGAAAAAGNTGGAAGGAAAAGTTAGTTGTTCTGAAGAGCTCAAT CGGTCCTGTAAGCTCAAAATGAGAGGGGAAAAACCGGTCCAATGGGGGTT TCTGCACCCATTCTATTGGGTTAGATCTTCATCAAATAGTTTTCAATTTT GAGAGCTCCGTACCTCGAAAGTACAATATAATCAACCAGCTTCATTTCAT AATGTCAATAGTTTGTTTTTCAAGAAGGTGATTCTCAACTTGCTTGTAAA CTTCAACTGCTTGTAAACTTCAACTGCTTGTAAACTTCCATTTGTTCTGG CTTCATGTTTCAGCTCCTCCACGAACAAATATCACGTGATCTTCAACTCT TTACGTGATTGGTTGATTGGAGGCTGAATTATTCAAAGAGTTTTGTGAAA ATTCAACCAGTTCTTTAGTCACGTGATCAATCATTTTCAACGAATGTGCG GACGTATGTGTAGCAACTTTCCCATTCTTCGAAGCTTTTGCCGCCATATT GTCCAAAGGGATGGTGGTGTCGTCCGAAAATGCTTCTGAAACACATCGCC TCTCTTCTTCACTCTTTTGTGTTGAATATCCTGTCAAAAATAGAATGGGA TTTTTACGATCTTCTGCGAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044067XLOC_044067Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00070852-exon-scaffold_58-1491911889:876071..876277TCONS_00070852-exon-scaffold_58-1491911889:876071..876277Clytia hemisphaericaexon
TCONS_00070852-exon-scaffold_58-1510915933:876071..876277TCONS_00070852-exon-scaffold_58-1510915933:876071..876277Clytia hemisphaericaexon
TCONS_00070852-exon-scaffold_58-1575043694:876071..876277TCONS_00070852-exon-scaffold_58-1575043694:876071..876277Clytia hemisphaericaexon
TCONS_00070852-exon-scaffold_58-1491911889:877090..877190TCONS_00070852-exon-scaffold_58-1491911889:877090..877190Clytia hemisphaericaexon
TCONS_00070852-exon-scaffold_58-1510915933:877090..877190TCONS_00070852-exon-scaffold_58-1510915933:877090..877190Clytia hemisphaericaexon
TCONS_00070852-exon-scaffold_58-1575043694:877090..877190TCONS_00070852-exon-scaffold_58-1575043694:877090..877190Clytia hemisphaericaexon
TCONS_00070852-exon-scaffold_58-1491911889:877352..877419TCONS_00070852-exon-scaffold_58-1491911889:877352..877419Clytia hemisphaericaexon
TCONS_00070852-exon-scaffold_58-1510915933:877352..877419TCONS_00070852-exon-scaffold_58-1510915933:877352..877419Clytia hemisphaericaexon
TCONS_00070852-exon-scaffold_58-1575043694:877352..877419TCONS_00070852-exon-scaffold_58-1575043694:877352..877419Clytia hemisphaericaexon
TCONS_00070852-exon-scaffold_58-1491911889:877695..877912TCONS_00070852-exon-scaffold_58-1491911889:877695..877912Clytia hemisphaericaexon
TCONS_00070852-exon-scaffold_58-1510915933:877695..877912TCONS_00070852-exon-scaffold_58-1510915933:877695..877912Clytia hemisphaericaexon
TCONS_00070852-exon-scaffold_58-1575043694:877695..877912TCONS_00070852-exon-scaffold_58-1575043694:877695..877912Clytia hemisphaericaexon
TCONS_00070852-exon-scaffold_58-1491911889:878491..878573TCONS_00070852-exon-scaffold_58-1491911889:878491..878573Clytia hemisphaericaexon
TCONS_00070852-exon-scaffold_58-1510915933:878491..878573TCONS_00070852-exon-scaffold_58-1510915933:878491..878573Clytia hemisphaericaexon
TCONS_00070852-exon-scaffold_58-1575043694:878491..878573TCONS_00070852-exon-scaffold_58-1575043694:878491..878573Clytia hemisphaericaexon
TCONS_00070852-exon-scaffold_58-1491911889:878750..878929TCONS_00070852-exon-scaffold_58-1491911889:878750..878929Clytia hemisphaericaexon
TCONS_00070852-exon-scaffold_58-1510915933:878750..878929TCONS_00070852-exon-scaffold_58-1510915933:878750..878929Clytia hemisphaericaexon
TCONS_00070852-exon-scaffold_58-1575043694:878750..878929TCONS_00070852-exon-scaffold_58-1575043694:878750..878929Clytia hemisphaericaexon
TCONS_00070852-exon-scaffold_58-1491911889:879363..879577TCONS_00070852-exon-scaffold_58-1491911889:879363..879577Clytia hemisphaericaexon
TCONS_00070852-exon-scaffold_58-1510915933:879363..879577TCONS_00070852-exon-scaffold_58-1510915933:879363..879577Clytia hemisphaericaexon
TCONS_00070852-exon-scaffold_58-1575043694:879363..879577TCONS_00070852-exon-scaffold_58-1575043694:879363..879577Clytia hemisphaericaexon
TCONS_00070852-exon-scaffold_58-1491911889:879869..880006TCONS_00070852-exon-scaffold_58-1491911889:879869..880006Clytia hemisphaericaexon
TCONS_00070852-exon-scaffold_58-1510915933:879869..880006TCONS_00070852-exon-scaffold_58-1510915933:879869..880006Clytia hemisphaericaexon
TCONS_00070852-exon-scaffold_58-1575043694:879869..880006TCONS_00070852-exon-scaffold_58-1575043694:879869..880006Clytia hemisphaericaexon
TCONS_00070852-exon-scaffold_58-1491911889:880275..882240TCONS_00070852-exon-scaffold_58-1491911889:880275..882240Clytia hemisphaericaexon
TCONS_00070852-exon-scaffold_58-1510915933:880275..882240TCONS_00070852-exon-scaffold_58-1510915933:880275..882240Clytia hemisphaericaexon
TCONS_00070852-exon-scaffold_58-1575043694:880275..882240TCONS_00070852-exon-scaffold_58-1575043694:880275..882240Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_58supercontigscaffold_58:876071..882240 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0 0 0 0 0 0 0.179536 0 0.142307 0.0670883 0 0 2.06555 1.40172 0.770447 1.73131 0.185877 0.239505 5.159 4.38939 0.292739 0.261979 0 0.0617446 0.362352 0.260095 0 0 0 0
Blast
BLAST of TCONS_00070852 vs. Swiss-Prot (Human)
Match: GLRA3 (Glycine receptor subunit alpha-3 OS=Homo sapiens GN=GLRA3 PE=1 SV=2)

HSP 1 Score: 170.629 bits (431), Expect = 8.541e-45
Identity = 120/414 (28.99%), Postives = 195/414 (47.10%), Query Frame = 2
Query:  275 YEKNVRPLFYQRQPVHVNVSFTVIASDDIQVQTGDFRLELNFMFEWNDPRLKHEHGSGRSAIVIDDPAFMDEIWLPDIFVVNAK-----KVSEDALKHIEIFENGDVRYMLRLNIRASCHIELQMFPWDMQRCPLILRSYSYASEHIQLHWSEKVATNHYVNSMYKRPMAQFNLSGFELLVDEIAFEGEMVSSVHSDENEKWSALEAVFTFSRMSGFYLIQTLAPSNILVVLSWVNFLIQPEDSPPRVFLGISCILTMAAIQNYINFSLPKVSYIKIIDVYCLTCYFFVVLVMVEYAIVLLLNERVKKENIFRQEKKIPAKKNSRIQQISSFCKFW--------PNLKLCIYGNPFCMH----VTKRA----------------------VRLVDKASMVLFPTAYILFNIIYW 1399
            Y+  +RP F +  PV+V  +  + +   I   T D+R+ +    +WNDPRL +      S  +  DP+ +D IW PD+F  N K     +V+ D  K + IF+NG+V Y +RL +  SC ++L+ FP D+Q C + L S+ Y    +   W ++              +A+  L+  + L+ E   E ++          K++ +E  F   R  G+YLIQ   PS ++V+LSWV+F I  + +P RV LGI+ +LTM    +    SLPKVSY+K ID++   C  FV   ++EYA V  ++ + K+   FR+++    K  +    +  F +F                YG   C+     +T +                        + +D  S   FP A+++FNI YW
Sbjct:   57 YDARIRPNF-KGPPVNVTCNIFINSFGSIAETTMDYRVNIFLRQKWNDPRLAYSEYPDDSLDL--DPSMLDSIWKPDLFFANEKGANFHEVTTDN-KLLRIFKNGNVLYSIRLTLTLSCPMDLKNFPMDVQTCIMQLESFGYTMNDLIFEWQDEAPVQ----------VAE-GLTLPQFLLKE---EKDLRYCTKHYNTGKFTCIEVRFHLERQMGYYLIQMYIPSLLIVILSWVSFWINMDAAPARVALGITTVLTMTTQSSGSRASLPKVSYVKAIDIWMAVCLLFVFSALLEYAAVNFVSRQHKELLRFRRKR----KNKTEAFALEKFYRFSDMDDEVRESRFSFTAYGMGPCLQAKDGMTPKGPNHPVQVMPKSPDEMRKVFIDRAKKIDTISRACFPLAFLIFNIFYW 448          
The following BLAST results are available for this feature:
BLAST of TCONS_00070852 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
GLRA38.541e-4528.99Glycine receptor subunit alpha-3 OS=Homo sapiens G... [more]
back to top