Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00070852 ID=TCONS_00070852|Name=TCONS_00070852|organism=Clytia hemisphaerica|type=transcript|length=3176bpRun BLAST on NCBI transcript from alignment at scaffold_58:876071..882240+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00070852 ID=TCONS_00070852|Name=TCONS_00070852|organism=Clytia hemisphaerica|type=transcript|length=6170bp|location=Sequence derived from alignment at scaffold_58:876071..882240+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2 Blast
BLAST of TCONS_00070852 vs. Swiss-Prot (Human)
Match: GLRA3 (Glycine receptor subunit alpha-3 OS=Homo sapiens GN=GLRA3 PE=1 SV=2) HSP 1 Score: 170.629 bits (431), Expect = 8.541e-45 Identity = 120/414 (28.99%), Postives = 195/414 (47.10%), Query Frame = 2 Query: 275 YEKNVRPLFYQRQPVHVNVSFTVIASDDIQVQTGDFRLELNFMFEWNDPRLKHEHGSGRSAIVIDDPAFMDEIWLPDIFVVNAK-----KVSEDALKHIEIFENGDVRYMLRLNIRASCHIELQMFPWDMQRCPLILRSYSYASEHIQLHWSEKVATNHYVNSMYKRPMAQFNLSGFELLVDEIAFEGEMVSSVHSDENEKWSALEAVFTFSRMSGFYLIQTLAPSNILVVLSWVNFLIQPEDSPPRVFLGISCILTMAAIQNYINFSLPKVSYIKIIDVYCLTCYFFVVLVMVEYAIVLLLNERVKKENIFRQEKKIPAKKNSRIQQISSFCKFW--------PNLKLCIYGNPFCMH----VTKRA----------------------VRLVDKASMVLFPTAYILFNIIYW 1399 Y+ +RP F + PV+V + + + I T D+R+ + +WNDPRL + S + DP+ +D IW PD+F N K +V+ D K + IF+NG+V Y +RL + SC ++L+ FP D+Q C + L S+ Y + W ++ +A+ L+ + L+ E E ++ K++ +E F R G+YLIQ PS ++V+LSWV+F I + +P RV LGI+ +LTM + SLPKVSY+K ID++ C FV ++EYA V ++ + K+ FR+++ K + + F +F YG C+ +T + + +D S FP A+++FNI YW Sbjct: 57 YDARIRPNF-KGPPVNVTCNIFINSFGSIAETTMDYRVNIFLRQKWNDPRLAYSEYPDDSLDL--DPSMLDSIWKPDLFFANEKGANFHEVTTDN-KLLRIFKNGNVLYSIRLTLTLSCPMDLKNFPMDVQTCIMQLESFGYTMNDLIFEWQDEAPVQ----------VAE-GLTLPQFLLKE---EKDLRYCTKHYNTGKFTCIEVRFHLERQMGYYLIQMYIPSLLIVILSWVSFWINMDAAPARVALGITTVLTMTTQSSGSRASLPKVSYVKAIDIWMAVCLLFVFSALLEYAAVNFVSRQHKELLRFRRKR----KNKTEAFALEKFYRFSDMDDEVRESRFSFTAYGMGPCLQAKDGMTPKGPNHPVQVMPKSPDEMRKVFIDRAKKIDTISRACFPLAFLIFNIFYW 448 The following BLAST results are available for this feature:
BLAST of TCONS_00070852 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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