TCONS_00070853 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00070853
Unique Name	TCONS_00070853
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	3111

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at scaffold_58:876474..882240+

transcript sequence

>TCONS_00070853 ID=TCONS_00070853|Name=TCONS_00070853|organism=Clytia hemisphaerica|type=transcript|length=3111bp
aaaactgacacttttttgaattgaaaatattttttggacgTACTATGTTT
TGCATCGAGTATTATATTATGACGACTTGAAAATTTAGTTGGTACTTTTC
TGAGCAGATAAAAATGGCACAATATCGCTTCATAAAGTTATGGCTGGCCG
TAACCCATTTTACCGCCGCTGAGAACCACACACTCGatcatgtgacgtca
tcactcaTCTACGAAAAGAACGTCCGCCCGCTCTTCTATCAACGTCAACC
CGTCCATGTGAACGTCAGTTTTACCGTCATCGCGTCCGACGATATTCAAG
TTCAAACGGGGGACTTTCGTTTGGAGCTCAATTTTATGTTCGAATGGAAT
GACCCGCGCCTGAAACACGAGCATGGTTCGGGCAGAAGTGCTATTGTCAT
CGACGACCCTGCTTTCATGGATGAGATCTGGCTTCCGGACATTTTCGTCG
TCAACGCAAAGAAGGTATCGGAGGACGCGCTCAAGCATATCGAGATTTTC
GAGAACGGCGATGTCCGATATATGCTCAGATTGAACATTCGAGCGTCGTG
TCATATTGAACTACAGATGTTTCCTTGGGATATGCAACGATGTCCACTCA
TCCTCAGAAGTTACAGTTACGCATCAGAGCATATTCAACTACACTGGTCA
GAGAAAGTCGCCACTAACCATTATGTCAACTCAATGTACAAACGTCCGAT
GGCTCAATTCAATTTGTCTGGGTTCGAATTATTGGTGGACGAAATTGCTT
TCGAGGGTGAAATGGTCAGTAGCGTCCATTCCGATGAGAACGAGAAATGG
TCAGCATTGGAAGCAGTGTTTACCTTTTCACGGATGAGTGGTTTCTACCT
CATTCAAACACTGGCACCCTCCAACATCTTGGTGGTGTTATCTTGGGTCA
ACTTTCTCATCCAACCTGAAGACTCTCCTCCTCGTGTCTTCTTGGGAATC
TCCTGCATTCTCACCATGGCTGCCATTCAGAACTACATTAACTTCTCCTT
GCCCAAGGTCAGCTATATCAAGATTATCGACGTTTACTGTTTGACGTGCT
ATTTTTTCGTTGTCTTGGTGATGGTTGAGTACGCTATCGTTTTACTGTTG
AATGAGCGAGTCAAAAAGGAAAACATCTTCAGACAAGAGAAAAAGATTCC
CGCCAAAAAGAATTCCCGTATCCAACAGATCAGCTCTTTCTGCAAATTTT
GGCCCAACTTGAAGCTCTGTATCTATGGCAACCCGTTTTGTATGCACGTG
ACCAAGCGAGCTGTCCGATTGGTGGATAAAGCCAGTATGGTTCTCTTCCC
GACAGCTTACATCCTTTTCAACATCATCTATTGGACACACGTCACACAGA
AAATCGAAAGTACACAAAATCAAGATCATGGTTCATTGAAAGATTTCTTT
TTGTGAGAAATGGATAAGACTCGATCAAGAGTTGGGCTTGAATATATGAT
GGTTCAAGCAAACTAAACGAAAAGTAGGATCGTTCCTTTAATTCTGTTTG
AATGCAGAACAAGCTTGCAAAGGACGGCTTATAGCGCCTTTTGTTTAGAA
CTTTCTTTAATGCAGCGTGTCCGGTTTGTCCGAATAAAAGCGGGCCAGGA
ATCCAGATGTGATTCAGTCAACAGTCTTTTTTTCGTGATTATTCCAATTA
TCCTTCGTTCGCTCAGCTTGTATTCGATATCCAAAAAAATCATGGCTGTG
TTTAAGATAAGAAAGCTTCAAGTTATCTATGTCTTAAAATGAAGCATTGC
TATAATGATTTTACAATGCATCTTATGTCCCGCTTTTTTTTTGGACAGAC
TTTGAAGCGGACACTAAGTGGCAGCGGAAGGAACAGAAACTTCTGAACAA
TTTTGGATGGAGAAATTTGATTCAAACGTGACATTTTTTCGTTGAGCGTA
AAGTCAGGGATTTTGATAGATTTTATACTTATTCCTCGGATCCGAAACTT
ATTCCTTTCCGATGATAATtcaattcgatttttttaattgaaagacCCCT
GCGTCACAGACCAGGCAAGGCCCTAACCCACTAGAAAAGATTTGATCAGA
ATTTCATCTGCagagggaaaaataccctacaatttcagccccactggaaa
attggctTTGATTTCATCCGCATTCGGAATTCTTTGTTAACAAtttcact
ccaaaaccatccacaatggaacaatagaattttatccccattgggacttC
AATAGAATTTTTTTACTCCTGCTGTTAAAATTCCaccgaggctgtgagac
aggggtgtatcgaAGCACCACTTTCTGTGGAAAATTTTTTGTCCTCGTTA
TAATGGAACTTGGTACTGTAAATATTTTCGCACATCTATGTTTtacattt
gaaataaaaaaattctaccttacaaaaatacaaagctcTAATAATTTACA
TCGAGGAATAATCTCGATTACTTGTTAAATACAGGGCAGAAAGAAAAGTT
AGTTGTTCTGAAGAGCTCAATCGGTCCTGCAAGCTTAAAATGAGATGGGA
AAAAGNTGGAAGGAAAAGTTAGTTGTTCTGAAGAGCTCAATCGGTCCTGT
AAGCTCAAAATGAGAGGGGAAAAACCGGTCCAATGGGGGTTTCTGCACCC
ATTCTATTGGGTTAGATCTTCATCAAATAGTTTTCAATTTTGAGAGCTCC
GTACCTCGAAAGTACAATATAATCAACCAGCTTCATTTCATAATGTCAAT
AGTTTGTTTTTCAAGAAGGTGATTCTCAACTTGCTTGTAAACTTCAACTG
CTTGTAAACTTCAACTGCTTGTAAACTTCCATTTGTTCTGGCTTCATGTT
TCAGCTCCTCCACGAACAAATATCACGTGATCTTCAACTCTTTACGTGAT
TGGTTGATTGGAGGCTGAATTATTCAAAGAGTTTTGTGAAAATTCAACCA
GTTCTTTAGTCACGTGATCAATCATTTTCAACGAATGTGCGGACGTATGT
GTAGCAACTTTCCCATTCTTCGAAGCTTTTGCCGCCATATTGTCCAAAGG
GATGGTGGTGTCGTCCGAAAATGCTTCTGAAACACATCGCCTCTCTTCTT
CACTCTTTTGTGTTGAATATCCTGTCAAAAATAGAATGGGATTTTTACGA
TCTTCTGCGAT

Run BLAST on NCBI

transcript from alignment at scaffold_58:876474..882240+

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00070853 ID=TCONS_00070853|Name=TCONS_00070853|organism=Clytia hemisphaerica|type=transcript|length=5767bp|location=Sequence derived from alignment at scaffold_58:876474..882240+ (Clytia hemisphaerica)
aaaactgacacttttttgaattgaaaatattttttggacgTACTATGTTT
TGCATCGAGTATTATATTATGACGACTTGAAAATTTAGTTGGTACTTTTC
TGAGCAGATAAAAATGGCACAATATCGCTTCATAAAGTTATGGTAAGATA
GTTATCGGGAAAACAAATTCATAGATTTGACGATTGGTCCAAAACTTTAC
TCGCAAATAAAAGCGCTTTTACGTGTTTTGCGGTATTAAATGATACTGGG
GAACCTGAGACAGCTTTGAAGAACGTTTCTTGGCGAGCTgataaacttga
aaaattttattACACTTCATGACAAGGCAATCGTAAGATTAAGCCGATGT
TTCTTTATACCAACTGTGTGCATAAAGTACGTAAAAGCTTCTGCTTGTAA
AAGTCCACCTGGATGATCAAGGAAAATATTGTCGTACAAATTGGGTAAAG
GGGGGGGCTAACTGCCCTAGCATTTCATCGATGAATTCGCACGAAGGTTT
TTGTGAATCTCTTTCATGAAAGCGTCCTTGGTGATATCTACAATATCACG
TAATCATTTcttgtaaatcaagttatcGATCGAGTAAAGTATAAAAAGTC
ATTCGTTTCATTTTAGGCTGGCCGTAACCCATTTTACCGCCGCTGAGAAC
CACACACTCGatcatgtgacgtcatcactcaTCTACGAAAAGAACGTCCG
CCCGCTCTTCTATCAACGTAAGTTGATTTTTATCGATTATTTTTGTACAT
CAAAAGCTATTATGCCTAAACTTTATTCTTCAAATGTATGCCTCAATTTT
TAATTGGgaaacaaagtcaaaattttcactCTTTTTCACGCTTTTTATCA
AgtagatattttttctttttcgtcgTAGGTCAACCCGTCCATGTGAACGT
CAGTTTTACCGTCATCGCGTCCGACGATATTCAAGTTCAAACGGGGGTAA
GTTGAAGGCCTCTTCCTCTATCAAATCTTTTTACGCTACTAATACTACTA
ACAACGGTGTTAAGAAATCCTGCACCCAACCGGAAATAGTCCATTAAAGC
CGAGATTAAGTTGATTTATAAAGTATCTTAAGAAAGGGAGCTGCagtttt
tttgcgaaaaatccTCCCGATTTTCTAATTTATCAAGACACAGGGTTAAG
AAAGTTCCCTTCCTTGAGttaaaaatatcggtaaaagtACATAGGAGAAA
ATATTGTTTTCTCAACTTTAGGACTTTCGTTTGGAGCTCAATTTTATGTT
CGAATGGAATGACCCGCGCCTGAAACACGAGCATGGTTCGGGCAGAAGTG
CTATTGTCATCGACGACCCTGCTTTCATGGATGAGATCTGGCTTCCGGAC
ATTTTCGTCGTCAACGCAAAGAAGGTATCGGAGGACGCGCTCAAGCATAT
CGAGATTTTCGAGAACGGCGATGTCCGATATATGCTCAGGTAACCAATTA
TATTCGCGCATTCGTTAAATCATCATCACTGCTTTGACATCACATCACTA
TTTAAAAAACCATTTCGTActtctttttttcaacattatttCTTTGATCT
CCAAAAATTTTGGTTCTTCTTACAAAAGTGTATATGATGTGTATGAAACA
TAACTTGAAAAAGACACGTAAAAGTGGTCAAAATATCgtaaagaaaaatg
tgttatgtttttattttgatttggttgcACATCACAAggctttttatgtt
tcactGATGTGTATTTATATATAAATACCTAACAACTCGAACAGATACGG
GAGGAAGGAATAAGGAATACTAAATATAACGCTCGGAATCAAAATGCTGA
GATATGGCGTTTGGAAGTTTTATTCGATTCGGTTATACTTAGACTGGATA
ATGCTTGGTCACAAGATAGTCGTCCTAAATAGATTATGGCAGACACTAAA
ATAAATAAGCTATTCTTAGATAAATAATATCTCATAAATATATTATGGTT
TTATATAGGCTGAGGACTAGGCACTGACTTTCAATTTTACATCTTTcctc
tttttgtttgtttctagATTGAACATTCGAGCGTCGTGTCATATTGAACT
ACAGATGTTTCCTTGGGATATGCAACGATGTCCACTCATCCTCAGAAGTT
GTAAGTTTCTTTGGCAATCTGCTGCTTTCACAAACACTTTATTGTTCAAT
GAGTGTGAACCTTATGCATTGGTTTTGCNCTCTTTACCCGCTTTCACAAA
CACTTTATTGTTCAATGAGTCTTAACCTTATGCATGGGCTTTACATTTCT
AACTTTTCCCAACTTTTGTCCCACAGACAGTTACGCATCAGAGCATATTC
AACTACACTGGTCAGAGAAAGTCGCCACTAACCATTATGTCAACTCAATG
TACAAACGTCCGATGGCTCAATTCAATTTGTCTGGGTTCGAATTATTGGT
GGACGAAATTGCTTTCGAGGGTGAAATGGTCAGTAGCGTCCATTCCGATG
AGAACGGTGAGTCAAGGTGTTACTTGTGACGTGTACTATTGATACACCAA
GTGCCTCATCGCAAACCAAACGGCGGTAGATACTATGTTGTTTCTTGTTT
AAAGTTTAAGATGACCTCTTGTGCTCTAGTATAATCTATAAATTGTATGA
CTTTCCTATCttaaaacgtcagaaacaattGTTCACGTTTTGGAAATTTA
CATTTTAAAGTTATGTCTTCGAACATTCGGTGATTATCTTCGGAGAAATG
GCCAGTATTTGGTCTAGCCTAGCCCATTATTTGGAGATTCCCTGTGTTTT
GGGGTTATCAAATTAAGCCCTAAGTTATCCTTTCCAGAGAGATATTCGAC
ATTGGGTCTAACCTGGGTTACTATTTGGAGATTCCCTGTTTTTTGGTTTA
TTAGATTAAGCCCTATCATTCGTTATCACATTATTTTAGAGAAATGGTCA
GCATTGGAAGCAGTGTTTACCTTTTCACGGATGAGTGGTTTCTACCTCAT
TCAAACACTGGCACCCTCCAACATCTTGGTGGTGTTATCTTGGGTCAACT
TTCTCATCCAACCTGAAGACTCTCCTCCTCGTGTCTTCTTGGGAATCTCC
TGCATTCTCACCATGGCTGCCATTCAGAACTACATTAACTTCTCCTTGCC
CAAGGTACATATTGCTCTTTCTCATTTCTTCATCAACCCTCTTGGACATT
ATTCGAATAAGCTTTGCCCTCATTCAGCCAACCGCGGACTGACCGCTCTT
GATATTCTTTTTCTAGAAATCTCTACCAATGTCTCTAAGTAAAAATTGGA
GCATCGTTtgggatttttttcaaaatggacCTAAACattcagtttttctt
ttttcaaagaaaaccgATTCGAGCTGAATTAGACTTTTTAGTCTGAGGCT
TATCTATCAGTAGAGCGAATGACGTCATACAAATTCAATTTCTAGGTCAG
CTATATCAAGATTATCGACGTTTACTGTTTGACGTGCTATTTTTTCGTTG
TCTTGGTGATGGTTGAGTACGCTATCGTTTTACTGTTGAATGAGCGAGTC
AAAAAGGAAAACATCTTCAGACAAGAGAAAAAGGTCAGTTGAGGGCTAAA
AGGTAGTCGGGTCAACATAATAAGACAGACATGGTCCATTTAAAGAATAC
CCAAATCAATGATCCGTTTTAAAGTCATTTCTTTTTGCATCAAAAATGTG
TCCCTCATTATACAGTATCCCTCATAATAAACAAGGAAAAGCTTCGCACT
TTTTGCTACTGAATTCGAGGAAAAACATACGCCTAATGTTTTGTTCTTAC
TGTCATAAATTATCATAATCAGCCTAAAAAATCACCATCCTTCATCAACA
GATTCCCGCCAAAAAGAATTCCCGTATCCAACAGATCAGCTCTTTCTGCA
AATTTTGGCCCAACTTGAAGCTCTGTATCTATGGCAACCCGTTTTGTATG
CACGTGACCAAGCGAGCTGTCCGATTGGTGGATAAAGCCAGTATGGTTCT
CTTCCCGACAGCTTACATCCTTTTCAACATCATCTATTGGACACACGTCA
CACAGAAAATCGAAAGTACACAAAATCAAGATCATGGTTCATTGAAAGAT
TTCTTTTTGTGAGAAATGGATAAGACTCGATCAAGAGTTGGGCTTGAATA
TATGATGGTTCAAGCAAACTAAACGAAAAGTAGGATCGTTCCTTTAATTC
TGTTTGAATGCAGAACAAGCTTGCAAAGGACGGCTTATAGCGCCTTTTGT
TTAGAACTTTCTTTAATGCAGCGTGTCCGGTTTGTCCGAATAAAAGCGGG
CCAGGAATCCAGATGTGATTCAGTCAACAGTCTTTTTTTCGTGATTATTC
CAATTATCCTTCGTTCGCTCAGCTTGTATTCGATATCCAAAAAAATCATG
GCTGTGTTTAAGATAAGAAAGCTTCAAGTTATCTATGTCTTAAAATGAAG
CATTGCTATAATGATTTTACAATGCATCTTATGTCCCGCTTTTTTTTTGG
ACAGACTTTGAAGCGGACACTAAGTGGCAGCGGAAGGAACAGAAACTTCT
GAACAATTTTGGATGGAGAAATTTGATTCAAACGTGACATTTTTTCGTTG
AGCGTAAAGTCAGGGATTTTGATAGATTTTATACTTATTCCTCGGATCCG
AAACTTATTCCTTTCCGATGATAATtcaattcgatttttttaattgaaag
acCCCTGCGTCACAGACCAGGCAAGGCCCTAACCCACTAGAAAAGATTTG
ATCAGAATTTCATCTGCagagggaaaaataccctacaatttcagccccac
tggaaaattggctTTGATTTCATCCGCATTCGGAATTCTTTGTTAACAAt
ttcactccaaaaccatccacaatggaacaatagaattttatccccattgg
gacttCAATAGAATTTTTTTACTCCTGCTGTTAAAATTCCaccgaggctg
tgagacaggggtgtatcgaAGCACCACTTTCTGTGGAAAATTTTTTGTCC
TCGTTATAATGGAACTTGGTACTGTAAATATTTTCGCACATCTATGTTTt
acatttgaaataaaaaaattctaccttacaaaaatacaaagctcTAATAA
TTTACATCGAGGAATAATCTCGATTACTTGTTAAATACAGGGCAGAAAGA
AAAGTTAGTTGTTCTGAAGAGCTCAATCGGTCCTGCAAGCTTAAAATGAG
ATGGGAAAAAGNTGGAAGGAAAAGTTAGTTGTTCTGAAGAGCTCAATCGG
TCCTGTAAGCTCAAAATGAGAGGGGAAAAACCGGTCCAATGGGGGTTTCT
GCACCCATTCTATTGGGTTAGATCTTCATCAAATAGTTTTCAATTTTGAG
AGCTCCGTACCTCGAAAGTACAATATAATCAACCAGCTTCATTTCATAAT
GTCAATAGTTTGTTTTTCAAGAAGGTGATTCTCAACTTGCTTGTAAACTT
CAACTGCTTGTAAACTTCAACTGCTTGTAAACTTCCATTTGTTCTGGCTT
CATGTTTCAGCTCCTCCACGAACAAATATCACGTGATCTTCAACTCTTTA
CGTGATTGGTTGATTGGAGGCTGAATTATTCAAAGAGTTTTGTGAAAATT
CAACCAGTTCTTTAGTCACGTGATCAATCATTTTCAACGAATGTGCGGAC
GTATGTGTAGCAACTTTCCCATTCTTCGAAGCTTTTGCCGCCATATTGTC
CAAAGGGATGGTGGTGTCGTCCGAAAATGCTTCTGAAACACATCGCCTCT
CTTCTTCACTCTTTTGTGTTGAATATCCTGTCAAAAATAGAATGGGATTT
TTACGATCTTCTGCGAT

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_044067	XLOC_044067	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_58	supercontig	scaffold_58:876474..882240 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0592786	0	0	0	0	0	0	0	0.24781	0.0746748	0.232579	0.175627	0.0488195	0	0	0	0.733788	0.696648	0	0	1.70103	1.8443	0.287984	0.736103	0	0.0742557	0	0	0	0

Blast

[Close]

BLAST of TCONS_00070853 vs. Swiss-Prot (Human)
Match: GLRA3 (Glycine receptor subunit alpha-3 OS=Homo sapiens GN=GLRA3 PE=1 SV=2)

HSP 1 Score: 170.244 bits (430), Expect = 9.827e-45
Identity = 120/414 (28.99%), Postives = 195/414 (47.10%), Query Frame = 3

Query:  210 YEKNVRPLFYQRQPVHVNVSFTVIASDDIQVQTGDFRLELNFMFEWNDPRLKHEHGSGRSAIVIDDPAFMDEIWLPDIFVVNAK-----KVSEDALKHIEIFENGDVRYMLRLNIRASCHIELQMFPWDMQRCPLILRSYSYASEHIQLHWSEKVATNHYVNSMYKRPMAQFNLSGFELLVDEIAFEGEMVSSVHSDENEKWSALEAVFTFSRMSGFYLIQTLAPSNILVVLSWVNFLIQPEDSPPRVFLGISCILTMAAIQNYINFSLPKVSYIKIIDVYCLTCYFFVVLVMVEYAIVLLLNERVKKENIFRQEKKIPAKKNSRIQQISSFCKFW--------PNLKLCIYGNPFCMH----VTKRA----------------------VRLVDKASMVLFPTAYILFNIIYW 1334
            Y+  +RP F +  PV+V  +  + +   I   T D+R+ +    +WNDPRL +      S  +  DP+ +D IW PD+F  N K     +V+ D  K + IF+NG+V Y +RL +  SC ++L+ FP D+Q C + L S+ Y    +   W ++              +A+  L+  + L+ E   E ++          K++ +E  F   R  G+YLIQ   PS ++V+LSWV+F I  + +P RV LGI+ +LTM    +    SLPKVSY+K ID++   C  FV   ++EYA V  ++ + K+   FR+++    K  +    +  F +F                YG   C+     +T +                        + +D  S   FP A+++FNI YW
Sbjct:   57 YDARIRPNF-KGPPVNVTCNIFINSFGSIAETTMDYRVNIFLRQKWNDPRLAYSEYPDDSLDL--DPSMLDSIWKPDLFFANEKGANFHEVTTDN-KLLRIFKNGNVLYSIRLTLTLSCPMDLKNFPMDVQTCIMQLESFGYTMNDLIFEWQDEAPVQ----------VAE-GLTLPQFLLKE---EKDLRYCTKHYNTGKFTCIEVRFHLERQMGYYLIQMYIPSLLIVILSWVSFWINMDAAPARVALGITTVLTMTTQSSGSRASLPKVSYVKAIDIWMAVCLLFVFSALLEYAAVNFVSRQHKELLRFRRKR----KNKTEAFALEKFYRFSDMDDEVRESRFSFTAYGMGPCLQAKDGMTPKGPNHPVQVMPKSPDEMRKVFIDRAKKIDTISRACFPLAFLIFNIFYW 448

The following BLAST results are available for this feature:

BLAST of TCONS_00070853 vs. Swiss-Prot (Human)

BLAST of TCONS_00070853 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
GLRA3	9.827e-45	28.99	Glycine receptor subunit alpha-3 OS=Homo sapiens G...	[more]

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TCONS_00070853 (transcript) - C. hemisphaerica