TCONS_00070856 (transcript) - C. hemisphaerica

Overview
NameTCONS_00070856
Unique NameTCONS_00070856
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length492

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00070856 ID=TCONS_00070856|Name=TCONS_00070856|organism=Clytia hemisphaerica|type=transcript|length=492bp
ATTTTGTTTCATTTGCATCATTTTgtagaatttcaatattttcaatgtaa
aaaatacaatataatttctatagttataatttcatagtttttaacaaaaa
taattcGAAAATAAATTACtcttatcaaaatatttatttatttgtgaTGT
GATTGGTGTCGAAATCACAGAGTTGGCACATCACACCAAAAACTGCAATC
CAAGTTGTCAACCATtcaaaacttgaaataaaattaGAATAGTCTCTAAA
ATCCTCCAATGATTTACTTTCTGGCTGGGCAACAGTATTGTGGGCAAGTT
GGTACACATTGAGTAACACAGACTGATGGAcatggtggtggtggtggtgg
gggtggtggtggaggtggtggtggtggagCACAACAAACTGGAGCACATG
CTGGGGCACATGCAGCTGGGCATGGTGCGGAACATGGGTTGGCATCACGT
TTCAACATTtctgtaaaaaatgaaaaaagattcaTAAGTAAA
Run BLAST on NCBI

transcript from alignment at scaffold_58:891178..891852+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00070856 ID=TCONS_00070856|Name=TCONS_00070856|organism=Clytia hemisphaerica|type=transcript|length=675bp|location=Sequence derived from alignment at scaffold_58:891178..891852+ (Clytia hemisphaerica)
ATTTTGTTTCATTTGCATCATTTTgtagaatttcaatattttcaatgtaa
aaaatacaatataatttctatagttataatttcatagtttttaacaaaaa
taattcGAAAATAAATTACtcttatcaaaatatttatttatttgtgaTGT
GATTGGTGTCGAAATCACAGAGTTGGCACATCACACCAAAAACTGCAATC
CAAGTTGTCAACCATtcaaaacttgaaataaaattaGAATAGTCTCTAAA
ATCCTCCAATGATTTACTTTCTGGCTGGGCAACAGTATTGTGGGCAAGTT
GGTACACATTGAGTAACACAGACTGATGGAcatggtggtggtggtggggc
GGGTTGTCCTGGTAATCCTCCTGGTCCTGGTGGTCCTGGCATTCCTGGTG
GTCCTGGAAGTCCGGGTGGTCCAGCTGGTCCTGGGGCTCCTGGTGGTCCT
GGACGTCCTGGGGGTCCTGGGTTTCCTGGAATTGGtgctggtggtggtgg
tgggggtggtggtggtggtggaggtggtggtgggggtggtggtggaggtg
gtggtggtggagCACAACAAACTGGAGCACATGCTGGGGCACATGCAGCT
GGGCATGGTGCGGAACATGGGTTGGCATCACGTTTCAACATTtctgtaaa
aaatgaaaaaagattcaTAAGTAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044068XLOC_044068Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00070856-exon-scaffold_58-1491911889:891178..891517TCONS_00070856-exon-scaffold_58-1491911889:891178..891517Clytia hemisphaericaexon
TCONS_00070856-exon-scaffold_58-1510915933:891178..891517TCONS_00070856-exon-scaffold_58-1510915933:891178..891517Clytia hemisphaericaexon
TCONS_00070856-exon-scaffold_58-1575043694:891178..891517TCONS_00070856-exon-scaffold_58-1575043694:891178..891517Clytia hemisphaericaexon
TCONS_00070856-exon-scaffold_58-1491911889:891701..891852TCONS_00070856-exon-scaffold_58-1491911889:891701..891852Clytia hemisphaericaexon
TCONS_00070856-exon-scaffold_58-1510915933:891701..891852TCONS_00070856-exon-scaffold_58-1510915933:891701..891852Clytia hemisphaericaexon
TCONS_00070856-exon-scaffold_58-1575043694:891701..891852TCONS_00070856-exon-scaffold_58-1575043694:891701..891852Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_58supercontigscaffold_58:891178..891852 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.0462127	0	0	43.6777	39.2297	876.423	916.854	127.703	96.4379	252.378	91.5839	200.751	87.1585	167.108	578.771	146.027	320.955	1.00431	0	246.079	217.905	291.973	162.7	368.214	503.432	29.7725	10.187	0.564075	1.00002
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00070856 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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