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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00070860 ID=TCONS_00070860|Name=TCONS_00070860|organism=Clytia hemisphaerica|type=transcript|length=758bp
AATAGGCAACGAATAACTTAAgttgaaaaatcttgaaatggctgaatttc
aattcaatttgttgGACTGTTCAGAAGATTTAGGGACTTGCTCACGGACC
TTTTTATGCCCGTGCGTGACGGCGGGAGAGAACGCCAGGGCCGTTGACAA
ATCTTGCTTTTTGTTTGGTTTGATGTCAGTTCTTCCACTGTGTATGTTTA
CGAATGGTCACGTGAGAAAACTCATTCGACACAAATATAACATCAAGGGT
TCGTATCCTTCAGACTTGCTGGCCAACCTTTTGTGTCCATGTTGCTCATT
GGTTCAAGATGCAAGgGAGATCGAAGCCCACGCTACACCACCCCCTGCAG
TCAAAATAATTCGTCAATAACTGGAGGAGATATTTGGGGAAGAAAACGAT
ATATTAATGATTTATTTACTATCTTTTCATTGACGCACACACGAAATTGT
TTATATATAAACTTAaataatgtaaaaaataaatttcgtaTTCAATATAT
GTACATTTggttttaaaaaataattataacttctaaaaagatatttggtT
TAATTCTTTCCAAGAAAAAACTTCATTGCGATACAATGCACTGTATAATG
TTCAACCAAAGCTCTTCGATGGGATCTATCGGTATTCGAATGAAGATTCA
GAACTTCTCTCAAAAAATGATATCCACTCCACCTCTGATCATTCTAAAAA
TTCTCTCAACGCAGATTTTCCGTCCTTGAGTTGAGAGGTGATGAGTATAA
GGTGAACT Run BLAST on NCBI protein sequence of TCONS_00070860-protein >TCONS_00070860-protein ID=TCONS_00070860-protein|Name=TCONS_00070860-protein|organism=Clytia hemisphaerica|type=polypeptide|length=110bp
MAEFQFNLLDCSEDLGTCSRTFLCPCVTAGENARAVDKSCFLFGLMSVLP
LCMFTNGHVRKLIRHKYNIKGSYPSDLLANLLCPCCSLVQDAREIEAHAT
PPPAVKIIRQ Run BLAST on NCBI transcript from alignment at scaffold_58:939169..943866+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00070860 ID=TCONS_00070860|Name=TCONS_00070860|organism=Clytia hemisphaerica|type=transcript|length=4698bp|location=Sequence derived from alignment at scaffold_58:939169..943866+ (Clytia hemisphaerica)
AATAGGCAACGAATAACTTAAgttgaaaaatcttgaaatggctgaatttc
aattcaatttgttgGACTGTTCAGAAGATTTAGGGACTTGCTCACGGACC
TTTTTATGCCCGTGCGTGACGGCGGGAGAGAACGCCAGGGCCGTTGACAA
ATCTTGCTTTTTGTTTGGTTTGATGTCAGTTCTTCCACTGTGTATGTTTA
CGAATGGTCACGTGAGAAAACTCATTCGACACAAATATAACATCAAGGTA
ATTCCATTGATCCAAACCCTTAGATGGGAAATGAAGGCCAAAACGCGTGA
CCAACTTGGCTTTCACACAACTTGAAAGTAAAACTTATtgctagatttcg
aaaaatatccCGCTAAACTTTTTCTTGgttgagaaaggttaaaggttCCT
CTCTAGCTCTTTCGGGGCTTAAGCTCAATGGCTGATTCTTTTTAACCTGG
ATTATTGAATGACTCAAAAAAGAGGTCAAATTTATGAACCTTTGAGTTTG
TTAGAAATAGGTGAAAATCTTTTCATATGCTGCTATGTGTTCGTTGGAAG
GATAATTATGAGTTATTTATTGAATTATACTTTTTCAATACGAAAATGTA
GAGAGAAAACGCCTTATAAAAATACATGTTAATCTAAATAAAGCATTtgc
caaaaaatatttcaacttgATCAAAGAATATTCAATGTTCAAATGTTTGT
GGCTTGACTTAATGAAGGAAGCTTTCCAAAAGCTTATCTTCCTGATCACG
TTCGGCGTTTCGtttctttgataaaaaatcttcttttcctGGGGGAAAAT
AATTGTCTAAGCCAAGTAAAGGATCATTTGCCAAAGGTGGAAAATATTCT
GAAACCAGCAAATCGTCTTTTTGTTGAGATGGCAGGTAGACGTCCGAAGG
GTCGTTTTGAGGTGGGATGTATCCTGAAACTAGCAAATCGTCTTTTTGTT
GAGATGGCAGGTAGACGTCCGAAGGGTCGTTTTGAGGTGGGATGTATCCT
GAAACTAGCAAATCGTCTTTTTGTTGAGATGGTAGGTAGACGTCCGAAGG
GTCGTTTTGAGGTGGGATGTATCCTGAAACTAGCAAATCGTCTTTTTGTT
GAGATGGCAGGTAGACGTCCGAAGGGTCGTTTTGAGGTGGGATGTATCCT
GAAACTAGCAAATCGTCTTTTTGTTGAGATGGTAGGTAGACGTCCGAAGG
GTCGTTTTGAGGTGGGATGTATCCTGAAACTAGCAAATCGTCTTTTTGTT
GAGATGGCAGGTAGACGTCCGAAGGGTCGTTTTGAGGTGGGATGTATCCT
GAAACTAGCAAATCGTCTTTTTGTTGAGATGGTAGGTAGACGTCCGAAGG
GTCGTTTTGAGGTGGGATGTATCCTGAAACTAGCAAATCGTCTTTTTGTT
GAGATGGTAAGTAGACGTCCGAAGTGTCGTTTTGAGGTGGGATGTATCCT
GAAACCAGCAAATCTCGGTATTCCAGTTCAGGAAGAACGTCACTTTCTtc
taaaaatacaaagaaatcaaattcaTCTTCAATCACAATCAATGAGGTGG
GATATTGTGATAATGAGAAAATACTTCAAGAAAAAAAGCTATAATGGACA
CATTTTATTGGTTAAATAAAACTCAACAAAATACCTTTAAGTGGAAACCC
ATAAAGAGCATTCCATTGAAGCGCCAAAGTGATCAAAATGAGTCGCATGT
CCATCATGAATAATAGCCGAGTTTAAGTGGTATGGATGTTCTTCCCCCAC
TTAAGTTATATCCTTGCAACTCGGTGGTTTTTCATGAAAAGCTATTACGT
TTGTTTTGCTGTCGTGTAAAATAAACACCATACACAAAATCTTTTCTCTG
TCAAAAGTGGCAGCCATTATTATGTTGAACATTGAATGAAAATTCTTCCT
ACTTCCATCAGATAAAAGATTGTTTTGTTTATCGCAATGTCGTGTAAAAC
ACACACCAAATTACATATTTATTTTCCGCTCAAACTGAAGCGCACCTCGg
tttttcaaaaagagtttCGTTTGTTTTTTGGATGAGTTAACAATCAAATT
CAATAgtgcacccccttctcacagaccattGAAATTGATAgacatttgaa
aataatgaaataaaccaatcctcactgcaaaacatTTACTATCTTTCTCA
TCTCCActcgattttctttttttaaaacaaaagaattgaaatcttgattg
ataaaaaatatgagaatatcaatccccatcgagtttcagtctgttTTTTT
CATCCCTACTGCTACTGGCTGTCCttccgggtctgtgagaagggggtgta
ctaGTGCAATCCTAAAAGTCGCCTTTCTTGAGTTGTCTATGGCGGGATTT
CGTTAGTTTAGGAAAACCTTCCTTAGATACCAGAAACACCAGGAGGGtct
ttttctgtttattttccTACGTAAACACGTAACACGTTTTTGATTGGAGG
AATCCTCATGAAGAAACACGTAAGATGTCGAAATATCATTCATAGTAAAA
ATGGAGAAAAGGAGAGTGTCAAAACTAAAAAGCTCTACTAAAAAAGCGGA
AGAAAATACGTCTGCAttggaaaaactattttttatgTTATTAACCTTTA
TGAACTTTATGaacctacaatcatggacataaggtctgtagacttttcaa
aaattcctcaATAGTGccaaaaaaaagcctttttgacGCTTGGGAAATTT
CCCAAATGAACCACAAGTGGTTATTTGGCAGAAAACACCTACAGGCTTCC
TAACACTCCATGTAGCTTTTAGTCCTTgtgatttttggacttttttggtG
CACCAGACAGCTCTGAAaagttgtttactttttattaaaCCATCTCAAAT
ATGGTCTAATTAGATATCTTCTCGAATAAGTTGAAGAGCAAAGCTCAGTG
AAACCTTCAATCTTAGACAAAAAAAGGTCTGAAGAACTTGCAAAAATTCA
TTTCCTTCAATCTTGAGTGGATTTGGCTTATGGACTTGTTACCCAAACTC
TCCAAATCCGATAAAAACAACATTGGCTCtggtaaaaatgggttttcagg
gcttatttggaatttttttatgcatttttgaaaagtctacaacATCCTTT
TGTCCGTTACTATTGTACTCCTTTTTTCTATGAGAACTAGTAAATCTTTA
TGACGCTCAGTTGTTCTTATGGTTGTCatgtttctatttctataaGTTTT
AATAGCCCTAATTTGACCCTTAATCGTGCTTAGTCTGCTTAGAACTCAGT
CATTCCAGGTTCAGCAATGTCcttattttcgttttttttagcCTCATTGT
TTTcgtaaaattgttcttacaatATAAAGAATTTAGTTGGAGTAGGGGGA
GTAAATCAAATTCTTTCATCTATTCTTTTAATTGGAGTATGTCAGAATCT
TTTAGTCTTAGGTTTTGACAAAAACAAACATGTTCCTATTAAATTTATTA
CCAACAAACGTAGGTATGATATTACAAATTGCGaacaaaatacacgtttt
ttataagaacaaactatgtaagaacatgaggcttcgatgatcaaaatgtt
aagaacaagttaagaacattgtagggcttcgcggactcgaaaacagccaa
tttattaggaaaataaacaaaaattacatgaaaaatggggaaaataagaa
catttctagacttgaaactcaaaaagttaagaacatccgaaggcttcaga
aattttggatgAACGCGTCATCTCTTCTCTCACCTTCATCTTGTGTTTCT
CTTCTCTTGTTCAGGGTTCGTATCCTTCAGACTTGCTGGCCAACCTTTTG
TGTCCATGTTGCTCATTGGTTCAAGATGCAAGggtaacatgtttttttct
tttctgttcaTTTTTTCTACTATCTGGAACGAAAGAAGAGGAACAAATTG
TTTTCTTTCCTAGACTTTTGCAACTGCTCAGATAAATTCCCAACTATTTT
TATTAGAATATGAGGCCCACtggaaaaggtttttttattcaacgctgtaa
tagaccttttcataaattacgttaggaacatcacttgcctcgttttgaaa
ttattgtcaaGGTGATTAACTCTCAGcgaattttattaaaactaccttta
ttcataaaaaaaacatttaatgtctcaagggacataatcaccatgtcaat
tgtttgaaaacgaggcaagtgatgtttatgacgtaatttatgaaacggTC
TATTGTCATCACATTCCAATCCTCCTAACTATTTCTcaaaatgttgcatt
ttttaGGAGATCGAAGCCCACGCTACACCACCCCCTGCAGTCAAAATAAT
TCGTCAATAACTGGAGGAGATATTTGGGGAAGAAAACGATATATTAATGA
TTTATTTACTATCTTTTCATTGACGCACACACGAAATTGTTTATATATAA
ACTTAaataatgtaaaaaataaatttcgtaTTCAATATATGTACATTTgg
ttttaaaaaataattataacttctaaaaagatatttggtTTAATTCTTTC
CAAGAAAAAACTTCATTGCGATACAATGCACTGTATAATGTTCAACCAAA
GCTCTTCGATGGGATCTATCGGTATTCGAATGAAGATTCAGAACTTCTCT
CAAAAAATGATATCCACTCCACCTCTGATCATTCTAAAAATTCTCTCAAC
GCAGATTTTCCGTCCTTGAGTTGAGAGGTGATGAGTATAAGGTGAACT Coding sequence (CDS) from alignment at scaffold_58:939169..943866+ >TCONS_00070860 ID=TCONS_00070860|Name=TCONS_00070860|organism=Clytia hemisphaerica|type=CDS|length=999bp|location=Sequence derived from alignment at scaffold_58:939169..943866+ (Clytia hemisphaerica)
atggctgaatttcaattcaatttgttgGACTGTTCAGAAGATTTAGGGAC
TTGCTCACGGACCTTTTTATGCCCGTGCGTGACGGCGGGAGAGAACGCCA
GGGCCGTTGACAAATCTTGCTTTTTGTTTGGTTTGATGTCAGTTCTTCCA
CTGTGTATGTTTACGAATGGTCACGTGAGAAAACTCATTCGACACAAATA
TAACATCAAGGGTTCGTATCCTTCAGACTTGCTGGCCAACCTTTTGTGTC
CATGTTGCTCATTGGTTCAAGATGCAAGgGAGATCGAAGCCCACGCTACA
CCACCCCCTGCAGTCAAAATAATTCGTCAATAAatggctgaatttcaatt
caatttgttgGACTGTTCAGAAGATTTAGGGACTTGCTCACGGACCTTTT
TATGCCCGTGCGTGACGGCGGGAGAGAACGCCAGGGCCGTTGACAAATCT
TGCTTTTTGTTTGGTTTGATGTCAGTTCTTCCACTGTGTATGTTTACGAA
TGGTCACGTGAGAAAACTCATTCGACACAAATATAACATCAAGGGTTCGT
ATCCTTCAGACTTGCTGGCCAACCTTTTGTGTCCATGTTGCTCATTGGTT
CAAGATGCAAGgGAGATCGAAGCCCACGCTACACCACCCCCTGCAGTCAA
AATAATTCGTCAATAAatggctgaatttcaattcaatttgttgGACTGTT
CAGAAGATTTAGGGACTTGCTCACGGACCTTTTTATGCCCGTGCGTGACG
GCGGGAGAGAACGCCAGGGCCGTTGACAAATCTTGCTTTTTGTTTGGTTT
GATGTCAGTTCTTCCACTGTGTATGTTTACGAATGGTCACGTGAGAAAAC
TCATTCGACACAAATATAACATCAAGGGTTCGTATCCTTCAGACTTGCTG
GCCAACCTTTTGTGTCCATGTTGCTCATTGGTTCAAGATGCAAGgGAGAT
CGAAGCCCACGCTACACCACCCCCTGCAGTCAAAATAATTCGTCAATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00070860-exon-scaffold_58-1491911889:939169..939415 | TCONS_00070860-exon-scaffold_58-1491911889:939169..939415 | Clytia hemisphaerica | exon |
| TCONS_00070860-exon-scaffold_58-1510915933:939169..939415 | TCONS_00070860-exon-scaffold_58-1510915933:939169..939415 | Clytia hemisphaerica | exon |
| TCONS_00070860-exon-scaffold_58-1575043694:939169..939415 | TCONS_00070860-exon-scaffold_58-1575043694:939169..939415 | Clytia hemisphaerica | exon |
| TCONS_00070860-exon-scaffold_58-1491911889:942933..943001 | TCONS_00070860-exon-scaffold_58-1491911889:942933..943001 | Clytia hemisphaerica | exon |
| TCONS_00070860-exon-scaffold_58-1510915933:942933..943001 | TCONS_00070860-exon-scaffold_58-1510915933:942933..943001 | Clytia hemisphaerica | exon |
| TCONS_00070860-exon-scaffold_58-1575043694:942933..943001 | TCONS_00070860-exon-scaffold_58-1575043694:942933..943001 | Clytia hemisphaerica | exon |
| TCONS_00070860-exon-scaffold_58-1491911889:943425..943866 | TCONS_00070860-exon-scaffold_58-1491911889:943425..943866 | Clytia hemisphaerica | exon |
| TCONS_00070860-exon-scaffold_58-1510915933:943425..943866 | TCONS_00070860-exon-scaffold_58-1510915933:943425..943866 | Clytia hemisphaerica | exon |
| TCONS_00070860-exon-scaffold_58-1575043694:943425..943866 | TCONS_00070860-exon-scaffold_58-1575043694:943425..943866 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_58 | supercontig | scaffold_58:939169..943866 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR006461 | PLAC_motif_containing |
Blast
The following BLAST results are available for this feature:
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