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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00070862 ID=TCONS_00070862|Name=TCONS_00070862|organism=Clytia hemisphaerica|type=transcript|length=1680bp
ACAATGTGCTGTGATACAACTTTAGAAAGAATCAGAAGATGAGGTTTGTG
GTGCTTTTATTGACCATGGTGGCTCTTGCCAATGGTCGGCACATTCATCA
CCATCCACGCcaccaacaacaacaagaagaggatGAAATCGATTCTTTGG
ATGAAATGGCAGTGGATAACTATGATGATGATGTCAATGATGAAATGctt
tccaatggggataaacAAGAAGATGATGGTGAGAGGGTGGAAGATTTTGA
CGCCCCACAAAGTGACGCCCTTAAGATGGAGGGAGGAGAAGATGAAGACC
CAGTCAcagatgatgaaaatgaagaagagaacGATGATAATGTAGAGGAA
TCAAATGATGGATTAGAAGAAGAGGATCCACAAGACGAGAGTAGCCAGGA
CGTATCAAACAAAGGCAATGAAGGCGACGAACCTGATCCAAACACGCAAG
ATGAAAACAACCAAGAATCGAATGATGGAGACGAAGGTGAAGATCCAGTT
ACACAAGACGAGGATAAAGATGAATTAAGCGATGCTCAGGATGAAGACAC
TCCATCAGAAGCTGATGCATCGGAAGAAGGAGAATCTCCAGAAGCgaaga
aagatgaaaaagatgAGGACGAAAAGGAAAGTTTCGGTGAAGATCGAGAA
TTGGACGAAGATTTTTTCAGTGAGGAAAAACCCCAACAAAAACAAGAGAA
GAAAGACGAGGGGAAGGTAGATTTGGGAGTTGCTGAAGAAAAAAGCATCG
ATGATCGCAAGGAGATGGAAGAAATGGAGAAGGAGATGACTGGTGCTGGT
GCTGGGgaagagaaaacgaaagtgaaagtggtcAAACCTATGAAACCAAC
TGAAAAGACCACAACAGCAGTGAAACCTACTGAAACTACCATCACAGAAA
AACCAACAACAACCACAACTCCAGCCCCTACAACCACGACCGAAGCAACG
ACCACAACAGAAGCAATGACAACGACCACAACAACGAAATCTCCAGCAAA
ATCTCCCTCACCTTTGAACAAAATCATGAAACAGTTGAAAATGTTGGGTG
ACGAAACAAGTTATTTGACGTCACAAAACCGACATTTACGACGTGCCGTC
CACTTGTTATTCCGACGAATGAACTCACAGAACAGAATCAACAAACGAGA
GTTCAAGAAGCTTGCAAAACGTCTCAAAGAATTGGAAGAAATCAATTCCA
ACAATGGGATTGGGAATGAGTTGTTCGAACGACGACCAGAACGTAACAAT
AATGTTGATTGGTGGTGATCTTACATTTTcataaaagtttcatttttgaa
tAGGATGATGAATATAACATCATTTTGTCTAAAGTTCTAATATGGCCCAT
CTTCCTTGATTCTTTAACATGAAAGGgcattaaaatcttttttgaactGA
AGTAAAATTTAAGTCTTCTTTGAATATCTTtctgaatattttgaaatagt
tATGTATGGTTGTAATAAATTTACAAAGAAATACTGAAaacatcttttat
aagaaaaactcTGACCCCCTCTTTTCTAAAATAGTTTTCCTTGGTGATTT
TGACGTCAACAAAAAGTCGTATGAAATTTTGTACACCCCCTTCTTACAGa
cccaatttttccagtgggatgggtttccagtgggtctgtgagaagggggt
gtcttgtagtaaatttaaaaagaaatacat Run BLAST on NCBI transcript from alignment at scaffold_58:969264..972338+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00070862 ID=TCONS_00070862|Name=TCONS_00070862|organism=Clytia hemisphaerica|type=transcript|length=3075bp|location=Sequence derived from alignment at scaffold_58:969264..972338+ (Clytia hemisphaerica)
ACAATGTGCTGTGGTAATTTGAACCATTTTCGTTATCGAAACTTTATTTA
ATTAATTTGTCTCCTGGCATTAATGACTAAACTCAAATCATTTTCTCAGT
CAGTTTTCATGAGAATGAGGATGGATGTCTATTTCATCTAGTTAGCCTTA
CTATTTTCGTTTGGTCAAATTTTGGTGGTATATATAATGAAATAATTAGA
CCTTTTACGGCACGTCTGTGTTAATTTCATAAGGTTTGCTTCCTGCAAAA
GCAACTAATGGTTATTTGAATGATATATCATTTCCTTTGCAAACCCATAT
TTAAAGAGATGCGAATCAACTTTTGATGCTTTATTTATATTTCTCATTTA
CAGATACAACTTTAGAAAGAATCAGAAGATGAGGTTTGTGGTGCTTTTAT
TGACCATGGTGGCTCTTGGTAAGTAGTgaatattctttttcatttttcca
aatctttagaCTTCCTAGTCTTGtagttttcattttaaagattaTTGAAG
AAATCTGCCACTAGTTCTTTCGCTGAATAACTCTTCTTCACTCCTCTGAT
TCTTCCTTATTCCAGCCAGGCTTCCCATCCTTGTGTTAACGTTTGAGATT
AAGCAGGTAACTCTCTCCCACTAATTCTTTCGCTTGGGATTTTGCAATCC
ATGTTCCAATCTTCGGACAAAATCAAAGACACCAATCTGATTCTTTCATC
TTTTCATTGCAGCCAATGGTCGGCACATTCATCACCATCCACGCcaccaa
caacaacaagaagaggatGAAATCGATTCTTTGGATGAAATGGCAGTGGA
TAACTATGATGATGATGTCAATGATGAAATGctttccaatggggataaac
AAGAAGATGATGGTGAGAGGGTGGAAGATTTTGACGCCCCACAAAGTGAC
GCCCTTAAGATGGAGGGAGGAGAAGATGAAGACCCAGTCAcagatgatga
aaatgaagaagagaacGATGATAATGTAGAGGAATCAAATGATGGATTAG
AAGAAGAGGATCCACAAGACGAGAGTAGCCAGGACGTATCAAACAAAGGC
AATGAAGGCGACGAACCTGATCCAAACACGCAAGATGAAAACAACCAAGA
ATCGAATGATGGAGACGAAGGTGAAGATCCAGTTACACAAGACGAGGATA
AAGATGAATTAAGCGATGCTCAGGATGAAGACACTCCATCAGAAGCTGAT
GCATCGGAAGAAGGAGAATCTCCAGAAGCgaagaaagatgaaaaagatgA
GGACGAAAAGGAAAGTTTCGGTGAAGATCGAGAATTGGACGAAGATTTTT
TCAGTGAGGAAAAACCCCAACAAAAACAAGAGAAGAAAGACGAGGGGAAG
GTAGATTTGGGAGTTGCTGAAGAAAAAAGCATCGATGATCGCAAGGAGAT
GGAAGAAATGGAGAAGGAGATGACTGGTGCTGGTGCTGGGgaagagaaaa
cgaaagtgaaagtggtcAAACCTATGAAACCAACTGAAAAGACCACAACA
GCAGTGAAACCTACTGAAACTACCATCACAGAAAAACCAACAACAACCAC
AACTCCAGCCCCTACAACCACGACCGAAGCAACGACCACAACAGAAGCAA
TGACAACGACCACAACAACGAAATCTCCAGCAAAATCTCCCTCACCTTTG
AACAAAATCATGAAACAGTTGAAAAGTAAGTTCGCATCAAATCTAAAGAC
TGTTCAGACATTCATCAGAAACTTTTAAGGGTTCCTTAAGATCAAGCTCA
GGTATGATATACTGGGTCTTGTTAAGAGTAAGCGGGCATGCAACCTCgtt
cccgtgtatcccaggctttatttacgttacttatagacgccagagaatat
actatcagtaagcatcaaaaagctaataatacgcagggaacgaggttggc
gGACATACATTTATGGTAAATAGATCATAGTTTCTAATTGCCTGAAATGG
GTTTTGCGTTTTTTAGCTTTTAGCCAATACGCGCtaaatttactaaaata
gcaCAAAGAGCAACTAAAAAGacaatatttcagttaaattactgAATAGG
GAAGTTTGATATATTTTGAAGGAAGTCTAAAAGCATCATTATCCACATTA
TTCGTCGAATTCGCAATTTTGATACATTTGTTTCGAAAGCATGTTGACAG
GGAAGTCCGTTCGACCAATTAGAATTCGGTTAATATTACCATAGCAAGAA
ACCCAAAAGATTTAATTGAGACGAAGATGGATATTGTTAGTCATTATGCT
TTCCAAGAATATTCAACCATCCTTTACCTCGCCCGACATTAGACCTTTTC
acaaattacgtcacgaaaatcccttgccttgttttgaaattattaccaaT
GTGATTAACTCCCAAGACTTTCTATAGAAATTCCACGAAAGATAGGTGAA
ACTTTCTGATATTGCTCCCTATTCTTTCACCATTAGTGTTGGGTGACGAA
ACAAGTTATTTGACGTCACAAAACCGACATTTACGACGTGCCGTCCACTT
GTTATTCCGACGAATGAACTCACAGAACAGAATCAACAAACGAGAGTTCA
AGAAGCTTGCAAAACGTCTCAAAGAATTGGAAGAAATCAATTCCAACAAT
GGGATTGGGAATGAGTTGTTCGAACGACGACCAGAACGTAACAATAATGT
TGATTGGTGGTGATCTTACATTTTcataaaagtttcatttttgaatAGGA
TGATGAATATAACATCATTTTGTCTAAAGTTCTAATATGGCCCATCTTCC
TTGATTCTTTAACATGAAAGGgcattaaaatcttttttgaactGAAGTAA
AATTTAAGTCTTCTTTGAATATCTTtctgaatattttgaaatagttATGT
ATGGTTGTAATAAATTTACAAAGAAATACTGAAaacatcttttataagaa
aaactcTGACCCCCTCTTTTCTAAAATAGTTTTCCTTGGTGATTTTGACG
TCAACAAAAAGTCGTATGAAATTTTGTACACCCCCTTCTTACAGacccaa
tttttccagtgggatgggtttccagtgggtctgtgagaagggggtgtctt
gtagtaaatttaaaaagaaatacat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00070862-exon-scaffold_58-1491911889:969264..969276 | TCONS_00070862-exon-scaffold_58-1491911889:969264..969276 | Clytia hemisphaerica | exon |
| TCONS_00070862-exon-scaffold_58-1510915933:969264..969276 | TCONS_00070862-exon-scaffold_58-1510915933:969264..969276 | Clytia hemisphaerica | exon |
| TCONS_00070862-exon-scaffold_58-1575043694:969264..969276 | TCONS_00070862-exon-scaffold_58-1575043694:969264..969276 | Clytia hemisphaerica | exon |
| TCONS_00070862-exon-scaffold_58-1491911889:969617..969681 | TCONS_00070862-exon-scaffold_58-1491911889:969617..969681 | Clytia hemisphaerica | exon |
| TCONS_00070862-exon-scaffold_58-1510915933:969617..969681 | TCONS_00070862-exon-scaffold_58-1510915933:969617..969681 | Clytia hemisphaerica | exon |
| TCONS_00070862-exon-scaffold_58-1575043694:969617..969681 | TCONS_00070862-exon-scaffold_58-1575043694:969617..969681 | Clytia hemisphaerica | exon |
| TCONS_00070862-exon-scaffold_58-1491911889:969976..970938 | TCONS_00070862-exon-scaffold_58-1491911889:969976..970938 | Clytia hemisphaerica | exon |
| TCONS_00070862-exon-scaffold_58-1510915933:969976..970938 | TCONS_00070862-exon-scaffold_58-1510915933:969976..970938 | Clytia hemisphaerica | exon |
| TCONS_00070862-exon-scaffold_58-1575043694:969976..970938 | TCONS_00070862-exon-scaffold_58-1575043694:969976..970938 | Clytia hemisphaerica | exon |
| TCONS_00070862-exon-scaffold_58-1491911889:971700..972338 | TCONS_00070862-exon-scaffold_58-1491911889:971700..972338 | Clytia hemisphaerica | exon |
| TCONS_00070862-exon-scaffold_58-1510915933:971700..972338 | TCONS_00070862-exon-scaffold_58-1510915933:971700..972338 | Clytia hemisphaerica | exon |
| TCONS_00070862-exon-scaffold_58-1575043694:971700..972338 | TCONS_00070862-exon-scaffold_58-1575043694:971700..972338 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_58 | supercontig | scaffold_58:969264..972338 + |
Blast
The following BLAST results are available for this feature:
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