TCONS_00070864 (transcript) - C. hemisphaerica

Overview
NameTCONS_00070864
Unique NameTCONS_00070864
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length357

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00070864 ID=TCONS_00070864|Name=TCONS_00070864|organism=Clytia hemisphaerica|type=transcript|length=357bp
ATGTGTCCCTTAGCTCATTGAGTTCGAAGTTTCGAGTGAAATGTTGTTTT
ATGCTGTCCATTTCTTTATTGTAGgcgtaaatatggaaatattccTCATA
GTAATACAAACACATAGCATAACAAAGGGCGGCTTCGATAGGCGTGAAGG
CGGAATCCCTTTTCTTTTCGAACATTTGAGGGCGGAGGTCTAATGCTATA
CAGTGTCTTTTGTGAGTAGAGAAGATTTGTTTCATATCATCGCTCTAAAA
AGAGTTAAAAAGGAAATACTTTAAAGTTAGTTAGTTTACACCTCAAAACG
AAGAAAAgttttaaagtttcaaaatacAGTAAAAAACAGTATTACGGAGG
GCCATTG
Run BLAST on NCBI

transcript from alignment at scaffold_58:1016674..1017093+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00070864 ID=TCONS_00070864|Name=TCONS_00070864|organism=Clytia hemisphaerica|type=transcript|length=420bp|location=Sequence derived from alignment at scaffold_58:1016674..1017093+ (Clytia hemisphaerica)
ATGTGTCCCTTAGCTCATTGAGTTCGAAGTTTCGAGTGAAATGTTGTTTT
ATGCTGTCCATTTCTTTATTGTAGgcgtaaatatggaaatattccTCATA
GTAATACAAACACATAGCATAACAAAGGGCAGCTTCGATAGGCGTGAAGG
CGGAATCCCTTTTCTTTTCGAACATTTGANCATAACAAAGGGCGGCTTCG
ATAGGCGTGAAGGCGGAATCCCTTTTCTTTTCGAACATTTGAGGGCGGAG
GTCTAATGCTATACAGTGTCTTTTGTGAGTAGAGAAGATTTGTTTCATAT
CATCGCTCTAAAAAGAGTTAAAAAGGAAATACTTTAAAGTTAGTTAGTTT
ACACCTCAAAACGAAGAAAAgttttaaagtttcaaaatacAGTAAAAAAC
AGTATTACGGAGGGCCATTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044073XLOC_044073Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00070864-exon-scaffold_58-1491911889:1016674..1016791TCONS_00070864-exon-scaffold_58-1491911889:1016674..1016791Clytia hemisphaericaexon
TCONS_00070864-exon-scaffold_58-1510915933:1016674..1016791TCONS_00070864-exon-scaffold_58-1510915933:1016674..1016791Clytia hemisphaericaexon
TCONS_00070864-exon-scaffold_58-1575043694:1016674..1016791TCONS_00070864-exon-scaffold_58-1575043694:1016674..1016791Clytia hemisphaericaexon
TCONS_00070864-exon-scaffold_58-1491911889:1016855..1017093TCONS_00070864-exon-scaffold_58-1491911889:1016855..1017093Clytia hemisphaericaexon
TCONS_00070864-exon-scaffold_58-1510915933:1016855..1017093TCONS_00070864-exon-scaffold_58-1510915933:1016855..1017093Clytia hemisphaericaexon
TCONS_00070864-exon-scaffold_58-1575043694:1016855..1017093TCONS_00070864-exon-scaffold_58-1575043694:1016855..1017093Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_58supercontigscaffold_58:1016674..1017093 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.75505	4.64945	2.20493	0.435625	0	0.888228	6.27186e-09	0	0	1.23932	0	0	0	0	0	0.374744	0	0	0	0	0	0	1.78896	0.686536	0.648273	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00070864 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top