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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00070868 ID=TCONS_00070868|Name=TCONS_00070868|organism=Clytia hemisphaerica|type=transcript|length=2904bp
AAAAAGGAAGCTTTGCCCATGTGATAATTTCTAGTCATTTTGCTAAGAAA
GcaaaagaaacaagaaaatgTGTGGAATTTGGGCCATCTTTGGTTACGAT
CATCAAGTTTCGTCAGAACTCCATCATGCTCTCCTCATCGCTCACCGAGG
ACCGGATTTCTTCCGTATCGAAAGTCTTCCGAACTTTAAACACTCCTACT
TAGCGTTCCATCGACTCTCCATCATGGATAATTTGACAGGACAACAACCC
ATGCGTTTGTATTCACTACCTCACATCCATCTCACGTACAACGGTGAAAT
CTATAACTTCAAAGAACTCTTCCAAAAATATGGATTCGAACAAACGACAT
CAATGGATGGTGAGATCATTATTCATCTTTACAACAAATTTGGCATGGAG
AAAACATTACAATTACTGGATGGAGTGTTCGCTGTCTCCATCTTCGATTC
GGAAAATGGAACTTTCCACATTGGAAGAGACACATTTGGGGTGCGTCCGT
TATTCACGTTACGTCCGGATTCCGGTGAGTTAGGAGTTTCATCCGAAGCT
AAAGGTTTGATTGGTTTGAACAAATCGAACGGAAAAGCAAGACCTATCAA
GCAACTGAAGCCTGGAACCTATGCTACCTTCAACATCTGTAAAGAAACTG
GCCTCTCTAAATTAGTAGAAGAAAAATCTTTCACAGATGTAGACGTTCCA
CAAGCCTTCGACATCCCAATCACCCTCACCGATGACGTCAAAGAAAATAT
CCGTAACCTGTTGACTGATGCCGTCCGAAAGCGATTGATGGCCGAACGGA
GGATAGGATGTTTGCTCTCCGGTGGACTTGATTCTAGTCTAGTTGCAGCA
TTGGTTGTCAAGCTATCCAGAGAAATGGGCATCAAATACCCCATCCAAAC
CTTTTCAATCGGTTTCCCAGGGTCACCTGATGTAATGAAAGCACGAAAAG
TGGCCGAAATGTTGCAGACAGAGCACCACGAAGTCCTCATCACGCCACAA
GAAGCTTTAGATGCTCTTCCTGATGTAAACTATGCCTTAGAGAGTTATGA
TATCACCACAAACAGGGCGTCCACACCCATGTTTTTGTTGGCCAAATACA
TCCGCAAAAACACAAACACTGTCGTCATTTTCTCCGGCGAAGGATCAGAC
GAGCTCACTCAAGGTTACATCTACTTCCACAAAGCACCAACGCCCGAAGC
CGCCCATGAAGATTCCAAACGCCTCTTACGTGAATTGTACATCTTTGACA
ACTTGAGAGCGGATCGAACCATCTCCGCCCATGGATTGGAGCTACGTGTA
CCTTTCCTGGACAAAGCTTTCACCTCATATTACCTCTCCATTGGTAAACA
ACTCGTCCAGCCAAAAGATGGCGTCGAAAAATTCCTCCTTCGCTCGGCGT
TTGATGGCCACCTCAAAGGCCTGCTACCGGATGAGATCTTATGGCGACCC
AAAGAAGCATTTAGTGATGGAATCTCTCAGAAAACTGATTCATGGTTTTC
ACACATCCAACGCCATGCAGCTACACTTTTCACCAAACAACAACTGGAGG
AAGCTGCAGAGAAATTCCCCATCAACCCACCTTTCTCCTTCGAAAGCCTG
TATTACCGCACTATGTTTGAATCCAAGTATCCCGGTCAGTGCCATATATT
GCCATACTTTTGGATGCCCAGATGGCAAGAGGGAGATGTGAAAGACCCCT
CGGCTAGAGTGCTAACAAACTATaaacaataaactaaaaatagaaCGTCG
TAAAAACAATTATCTAAAAGATGATTAGCTAAACAGTTGACCtacataaa
aataacaatatacaggcaaaattcataaaatggacttccaatttaattta
ttttattgcCGAAAATGGAGCGAaatttttagaaacaaaatgtcTTAGGG
GTTAATTATTGTTCCAAATATTCCAATTTTTtaggaattatttttttgta
acaaGTTGTCATTATTTATTTATAGACCACTGaattaataacaaaaagaa
actaATGTTTACCGCAATTGGTTGTCATAATCTTCTGTGGGTGGGGGGGG
CGGCGGCCTTGAAATTCTGCCTGGCGTCAAACATTTCAAGAATTGATTCG
AATTTACTTCTTTTTGAGGCTATATTTGCTATCGTTGTTATACATAAATA
TCTCTATATGTTTCAATTTTACTTTATGTAAAGAGTCAAGCTCTCCATCT
gttatttatttacaaaaaacaaactatGGTCAAATTCAATCCACCCAAAT
ATCAAACACTACAGCTCAAGAGGTCCGAAAACTTTTTATACAGGAGTCGG
GAGTGTAATAAACATTGTAAGGAATACTGAAAGGTAGCTGGTCAAAATCG
GTTAAAAGCAATTTTGTATCTGGTTGGGATGGTCATAAAGTATtatttaa
aattcataaaaaactgattttcaaCTTAGAACCTTGTGCAAATTTGACTT
AAAAAGCTAGTCACGATCAAGAATATTTGGTTGGTAATGAGAAAGATCGC
TGAAAACACAATTTTCCCTAGAAAAACTTCTTCTAAGAGAGATGTACAAA
TATGGGTGACTTTTTGTTACGGACTCTGGAATTTGGCTGATTACGCcctt
ttttggaagaatgtaCGTTTGGAGATAAAACCTAATTGTTCAGCAACAAT
ATCGTGGTTGTACCACGCAATTCTATATTGAAGGCATACTCCAACCTTGT
CCCAAGGTACAAAGTGGGGGTGGAAGGCCAAAgacaaaaaacaagaaagt
actCATTCTCAGTACTCTAacggggggggtttcagggggtacccgattcc
gtaattccgccaattttttctccaatttccgtctcaccgtcttaaattga
accaaaattccgtcaccgaaaattcctttgaaattcaaaatttttgtcga
aaat Run BLAST on NCBI transcript from alignment at scaffold_58:1051176..1055260+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00070868 ID=TCONS_00070868|Name=TCONS_00070868|organism=Clytia hemisphaerica|type=transcript|length=4085bp|location=Sequence derived from alignment at scaffold_58:1051176..1055260+ (Clytia hemisphaerica)
AAAAAGGAAGCTTTGCCCATGTGATAATTTCTAGTCATTTTGCGTAAGCA
GGATATTTTCATACAAAACTCTTTCACGCAGGGTTGCAACGTTGTGAAAT
TTCTTGAAATGAACTTTATCCTCACCGCATACACAACTTTGAGTTTACGA
AAGAACTTTGATTGATATAGTGAGGTTTGTTAATATGGTTTGGCCTGTTG
TGACAAAAATCTCTCATGAAGACATATAAAAGTTAAGACATGTTCAATTG
TGGGGTAGTACCAAAGAACTCTCTTCAGTAGCAGTTCTGGTGCAGTGCAT
GAAAAAAGTGTTTCTGGAACAGTAGTCTGTTTGGAAGTAAAAAGTAGCAA
AGTATTGCTACATTGCAAAGAATGTAGTTTCTACAAGTTTATTGAAAGAC
GTCAGCAGAGAGCTGCTGTAGCTTTATAGCTAGGCTGGCATCCTTATACT
ActtgcggttttgtagaggttttTGATTCAGACTTTGTTATAGCTGAAGT
AGAAGCGCATAGAAATAGCGTTCAGTAGCACGTTTTACATGATCGATTTG
TTTTCCAAGTACACAATGTTTAAACATCTAAGTGTGAAGATGTGTTTTCG
CTTGAAGATAAAAAGGGGGTCTAAAGTCAAAATAGTCTCGAATTTCGTAT
TTCTTCGATATTTACTTTTGTCTATTTGGAAAGgttctgaaaaatgaaaa
gaataaaaTCTGATGAGAAATCAACGTGGTTCTTGTTTCGCGCTCGTTAT
ATTTGCATGTGTGTGTTTGAAGTAGTTTAAAATGAAGTTCCACTTCTGTG
ATTTATGCAACTCTCAAGGGACCAGGGACTTTCTTTGAGTTtgagagaga
ttcgaattacagaaagtatcTTATATTATACTTTCTAGTTGAGGGGACCG
ATATTCTTATAACAGTTCGAACTATTgtgaaagattcgaataacagaggt
AAAAAAAATAGAGAGAGTGAACTGTACAAATGTCTTTCAATCACATACTA
AATTGACTTCTTTCTTCTAATTTCAGTAAGAAAGcaaaagaaacaagaaa
atgTGTGGAATTTGGGCCATCTTTGGTTACGATCATCAAGTTTCGTCAGA
ACTCCATCATGCTCTCCTCATCGCTCACCGAGGACCGGATTTCTTCCGTA
TCGAAAGTCTTCCGAACTTTAAACACTCCTACTTAGCGTTCCATCGACTC
TCCATCATGGATAATTTGACAGGACAACAACCCATGCGTTTGTATTCACT
ACCTCACATCCATCTCACGTACAACGGTGAAATCTATAACTTCAAAGAAC
TCTTCCAAAAATATGGATTCGAACAAACGACATCgtaagttaaaaatatt
tattttgaatttcacCATGTGAAAAGATTTCCCGACATCCTTTGCAGCCT
CAACCATTCAAAACTTCCACAAATGACACAAACTGCAAATTGCTCTCAAA
AACTCTGTCTGTAAGTTTGGGCAGTTCTAGTCAATTTCTTCCATAAGAAT
GATTTAATAAATGAGTTTCCCCTCTCTCATAGAATGGATGGTGAGATCAT
TATTCATCTTTACAACAAATTTGGCATGGAGAAAACATTACAATTACTGG
ATGGAGTGTTCGCTGTCTCCATCTTCGATTCGGAAAATGGAACTTTCCAC
ATTGGAAGAGACACATTTGGGGTGCGTCCGTTATTCACGTTACGTCCGGA
TTCCGGTGAGTTAGGAGTTTCATCCGAAGCTAAAGGTTTGATTGGTTTGA
ACAAATCGAACGGAAAAGCAAGACCTATCAAGCAACTGAAGCCTGGAACC
TATGCTACCTTCAACATCTGTAAAGAAACTGGCCTCTCTAAATTAGTAGA
AGAAAAATCTTTCACAGATGTAGACGTTCCACAAGCCTTCGACATCCCAA
TCACCCTCACCGATGACGTCAAAGAAAATATCCGTAACCTGTTGACTGAT
GCCGTCCGAAAGCGATTGATGGCCGAACGGAGGATAGGATGTTTGCTCTC
CGGTGGACTTGATTCTAGTCTAGTTGCAGCATTGGTTGTCAAGCTATCCA
GAGAAATGGGCATCAAATACCCCATCCAAACCTTTTCAATCGGTTTCCCA
GGGTCACCTGATGTAATGAAAGCACGAAAAGTGGCCGAAATGTTGCAGAC
AGAGCACCACGAAGTCCTCATCACGCCACAAGAAGCTTTAGATGCTCTTC
CTGATGTAAACTATGCCTTAGAGAGTTATGATATCACCACAAACAGGGCG
TCCACACCCATGTTTTTGTTGGCCAAATACATCCGCAAAAACACAAACAC
TGTCGTCATTTTCTCCGGCGAAGGATCAGACGAGCTCACTCAAGGTTACA
TCTACTTCCACAAAGCACCAACGCCCGAAGCCGCCCATGAAGATTCCAAA
CGCCTCTTACGTGAATTGTACATCTTTGACAACTTGAGAGCGGATCGAAC
CATCTCCGCCCATGGATTGGAGCTACGTGTACCTTTCCTGGACAAAGCTT
TCACCTCATATTACCTCTCCATTGGTAAACAACTCGTCCAGCCAAAAGAT
GGCGTCGAAAAATTCCTCCTTCGCTCGGCGTTTGATGGCCACCTCAAAGG
CCTGCTACCGGATGAGATCTTATGGCGACCCAAAGAAGCATTTAGTGATG
GAATCTCTCAGAAAACTGATTCATGGTTTTCACACATCCAACGCCATGCA
GCTACACTTTTCACCAAACAACAACTGGAGGAAGCTGCAGAGAAATTCCC
CATCAACCCACCTTTCTCCTTCGAAAGCCTGTATTACCGCACTATGTTTG
AATCCAAGTATCCCGGTCAGTGCCATATATTGCCATACTTTTGGATGCCC
AGATGGCAAGAGGGAGATGTGAAAGACCCCTCGGCTAGAGTGCTAACAAA
CTATaaacaataaactaaaaatagaaCGTCGTAAAAACAATTATCTAAAA
GATGATTAGCTAAACAGTTGACCtacataaaaataacaatatacaggcaa
aattcataaaatggacttccaatttaatttattttattgcCGAAAATGGA
GCGAaatttttagaaacaaaatgtcTTAGGGGTTAATTATTGTTCCAAAT
ATTCCAATTTTTtaggaattatttttttgtaacaaGTTGTCATTATTTAT
TTATAGACCACTGaattaataacaaaaagaaactaATGTTTACCGCAATT
GGTTGTCATAATCTTCTGTGGGTGGGGGGGGCGGCGGCCTTGAAATTCTG
CCTGGCGTCAAACATTTCAAGAATTGATTCGAATTTACTTCTTTTTGAGG
CTATATTTGCTATCGTTGTTATACATAAATATCTCTATATGTTTCAATTT
TACTTTATGTAAAGAGTCAAGCTCTCCATCTgttatttatttacaaaaaa
caaactatGGTCAAATTCAATCCACCCAAATATCAAACACTACAGCTCAA
GAGGTCCGAAAACTTTTTATACAGGAGTCGGGAGTGTAATAAACATTGTA
AGGAATACTGAAAGGTAGCTGGTCAAAATCGGTTAAAAGCAATTTTGTAT
CTGGTTGGGATGGTCATAAAGTATtatttaaaattcataaaaaactgatt
ttcaaCTTAGAACCTTGTGCAAATTTGACTTAAAAAGCTAGTCACGATCA
AGAATATTTGGTTGGTAATGAGAAAGATCGCTGAAAACACAATTTTCCCT
AGAAAAACTTCTTCTAAGAGAGATGTACAAATATGGGTGACTTTTTGTTA
CGGACTCTGGAATTTGGCTGATTACGCccttttttggaagaatgtaCGTT
TGGAGATAAAACCTAATTGTTCAGCAACAATATCGTGGTTGTACCACGCA
ATTCTATATTGAAGGCATACTCCAACCTTGTCCCAAGGTACAAAGTGGGG
GTGGAAGGCCAAAgacaaaaaacaagaaagtactCATTCTCAGTACTCTA
acggggggggtttcagggggtacccgattccgtaattccgccaatttttt
ctccaatttccgtctcaccgtcttaaattgaaccaaaattccgtcaccga
aaattcctttgaaattcaaaatttttgtcgaaaat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00070868-exon-scaffold_58-1491911889:1051176..1051218 | TCONS_00070868-exon-scaffold_58-1491911889:1051176..1051218 | Clytia hemisphaerica | exon |
| TCONS_00070868-exon-scaffold_58-1510915933:1051176..1051218 | TCONS_00070868-exon-scaffold_58-1510915933:1051176..1051218 | Clytia hemisphaerica | exon |
| TCONS_00070868-exon-scaffold_58-1575043694:1051176..1051218 | TCONS_00070868-exon-scaffold_58-1575043694:1051176..1051218 | Clytia hemisphaerica | exon |
| TCONS_00070868-exon-scaffold_58-1491911889:1052202..1052509 | TCONS_00070868-exon-scaffold_58-1491911889:1052202..1052509 | Clytia hemisphaerica | exon |
| TCONS_00070868-exon-scaffold_58-1510915933:1052202..1052509 | TCONS_00070868-exon-scaffold_58-1510915933:1052202..1052509 | Clytia hemisphaerica | exon |
| TCONS_00070868-exon-scaffold_58-1575043694:1052202..1052509 | TCONS_00070868-exon-scaffold_58-1575043694:1052202..1052509 | Clytia hemisphaerica | exon |
| TCONS_00070868-exon-scaffold_58-1491911889:1052708..1055260 | TCONS_00070868-exon-scaffold_58-1491911889:1052708..1055260 | Clytia hemisphaerica | exon |
| TCONS_00070868-exon-scaffold_58-1510915933:1052708..1055260 | TCONS_00070868-exon-scaffold_58-1510915933:1052708..1055260 | Clytia hemisphaerica | exon |
| TCONS_00070868-exon-scaffold_58-1575043694:1052708..1055260 | TCONS_00070868-exon-scaffold_58-1575043694:1052708..1055260 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_58 | supercontig | scaffold_58:1051176..1055260 + |
Blast
BLAST of TCONS_00070868 vs. Swiss-Prot (Human)
Match: ASNS (Asparagine synthetase [glutamine-hydrolyzing] OS=Homo sapiens GN=ASNS PE=1 SV=4) HSP 1 Score: 528.48 bits (1360), Expect = 2.974e-176 Identity = 289/564 (51.24%), Postives = 387/564 (68.62%), Query Frame = 2
Query: 68 MCGIWAIFGYDHQVSSELHHALLIAHRGPDFFRIESLPNFKHSYLAFHRLSIMDNLTGQQPMRLYSLPHIHLTYNGEIYNFKELFQKYGFEQTTSMDGEIIIHLYNKFGMEKTLQLLDGVFAVSIFDSENGTFHIGRDTFGVRPLFTLRPDSGELGVSSEAKGLIGLNKSNGKARPIKQLKPGTYATFNICKETGLS--KLVEEKSFTDVDVPQAFD-----IPITLTDDVKENIRNLLTDAVRKRLMAERRIXXXXXXXXXXXXVAALVVKLSREMGIKYPIQTFSIGFPGSPDVMKARKVAEMLQTEHHEVLITPQEALDALPDVNYALESYDITTNRASTPMFLLAKYIRKNTNTVVIFSGEGSDELTQGYIYFHKAPTPEAAHEDSKRLLRELYIFDNLRADRTISAHGLELRVPFLDKAFTSYYLSIGKQLVQPKDGVEKFLLRSAFDGHLKGLLPDEILWRPKEAFSDGISQKTDSWFSHIQRHAATLFTKQQLEEAAEKFPINPPFSFESLYYRTMFESKYPGQCHILPYFWMPRWQEGDVKDPSARVLTNYKQ*TK 1738
MCGIWA+FG D +S + A+ IAHRGPD FR E++ + + FHRL+++D L G QP+R+ P++ L YNGEIYN K++ Q + FE T +DGEII+HLY+K G+E+T+ +LDGVFA + D+ N +GRDT+GVRPLF + G L V SEAKGL+ L S ++ PG Y ++ ++ ++V+ DV + +D P + VK N+R L +AV+KRLM +RRIGCLLSGGLDSSLVAA ++K +E ++YP+QTF+IG SPD++ ARKVA+ + +EH+EVL +E + AL +V ++LE+YDITT RAS M+L++KYIRKNT++VVIFSGEGSDELTQGYIYFHKAP+PE A E+S+RLLRELY+FD LRADRT +AHGLELRVPFLD F+SYYLS+ ++ PK+G+EK LLR F+ L+P EILWRPKEAFSDGI+ +SWF +Q + + AA+KFP N P + E YYR +FE YPG+ L ++WMP+W + DPSAR LT+YK K
Sbjct: 1 MCGIWALFGSDDCLSVQCLSAMKIAHRGPDAFRFENVNGYTNCCFGFHRLAVVDPLFGMQPIRVKKYPYLWLCYNGEIYNHKKMQQHFEFEYQTKVDGEIILHLYDKGGIEQTICMLDGVFAFVLLDTANKKVFLGRDTYGVRPLFKAMTEDGFLAVCSEAKGLVTLKHSATPFLKVEPFLPGHYEVLDLKPNGKVASVEMVKYHHCRDVPLHALYDNVEKLFPGFEIETVKNNLRILFNNAVKKRLMTDRRIGCLLSGGLDSSLVAATLLKQLKEAQVQYPLQTFAIGMEDSPDLLAARKVADHIGSEHYEVLFNSEEGIQALDEVIFSLETYDITTVRASVGMYLISKYIRKNTDSVVIFSGEGSDELTQGYIYFHKAPSPEKAEEESERLLRELYLFDVLRADRTTAAHGLELRVPFLDHRFSSYYLSLPPEMRIPKNGIEKHLLRETFED--SNLIPKEILWRPKEAFSDGITSVKNSWFKILQEYVEHQVDDAMMANAAQKFPFNTPKTKEGYYYRQVFERHYPGRADWLSHYWMPKWI--NATDPSARTLTHYKSAVK 560
The following BLAST results are available for this feature:
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