TCONS_00070870 (transcript) - C. hemisphaerica

Overview
NameTCONS_00070870
Unique NameTCONS_00070870
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1229

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00070870 ID=TCONS_00070870|Name=TCONS_00070870|organism=Clytia hemisphaerica|type=transcript|length=1229bp
GGCGTATCATCAAGTAGCGGAATACCGGCATGGCTGCTGATTGAAGAAGg
caattttttaatgatttttggtCGTAGGACTTTTTGGACTTTTGGTGGTT
TTTGACTgtcattttggtgttttttgtaATACTCCTAGAtaataaataaa
caataaaatatataaagacGATGGCACAGTCACATGGAAGCAATGGAGCA
GACCAACAGCAAACTGCAGCAGTTGTTTGGTTGATTGTTGCTTTGGTCAT
TGGAATTGTTCTTTATCTATCCTACTTCTTTTCAAGTCaagggaaaaaga
aaaaagaaaAAAAGACACCAGTTCCTGCAAGACCAAATGAGGCATCTCAA
GGACCGGCAGTTGTTGGGCCAAGTGGGCGCCGGAGAGGTCCAAGAATGAG
AGTTCAAAGGAGAGATGAACCTGAACCTGATGATAATTTTGGAGACTTTG
GAGGAGAAAGCGATAACGAAGTAATAGATGCATCAGGAGAAGGTGGAGGG
AAAATTGGTGCCAAGAAACGCGCAAAGATGATTGCCAAAGCTGAGAAGAA
AGCCGAACGAGAGGCGTTGGAAGAAGAAAGAGCAGAACGAAAAAAACAAG
AAGCACTTTtagagaaagaaagagaaaaagatgcAAAACAAAGAGAAGCT
GAGGAACTAGCCAAGGAAGAAGAGCTTcgccttttgaaagaaaagaaaga
aaaagaggaATATGAAGAATATTTGAAACTGAAAGAATCTTTCATCATCG
AAGAATCTGGCGAAATTGGAGTGCTATCCGAGGAAGAGAGTCAAGCCTTG
CTACAAGAATTCATCGATTTCATAAAGGGGGCCAAGGTTGTACAACTAGA
GGATTTAGCTTTGAAATTCAACTTAAAAACACAAGAAGTTATTGAAAGAT
TGGAAAACCTTCAAGAAGCAGGACGGATAACAGGGGTGATGGACGATCGT
GGgaagtttattttcatttctgaaGAAGAGCTGAAAGCCGTCGCGAAATT
CATCAAACAGCGTGGTCGAATTTCTATCGCTGAACTCGCCGAATCTTCCA
ATACCCTCATCACGTTACAGGagaaagaaaattcgaaatCTGTTATTCAA
ACCTCTGCTTAATGGAGAGAATTTTTAGAGACCTTTTTTAAATGAATGGT
GTTGGCCTTTTTGTAAATAGAATTTTATCTTGatattatttatttctttt
ttggaataaattatgcaatcaatcaaatt
Run BLAST on NCBI

protein sequence of TCONS_00070870-protein

>TCONS_00070870-protein ID=TCONS_00070870-protein|Name=TCONS_00070870-protein|organism=Clytia hemisphaerica|type=polypeptide|length=313bp
MAQSHGSNGADQQQTAAVVWLIVALVIGIVLYLSYFFSSQGKKKKEKKTP
VPARPNEASQGPAVVGPSGRRRGPRMRVQRRDEPEPDDNFGDFGGESDNE
VIDASGEGGGKIGAKKRAKMIAKAEKKAEREALEEERAERKKQEALLEKE
REKDAKQREAEELAKEEELRLLKEKKEKEEYEEYLKLKESFIIEESGEIG
VLSEEESQALLQEFIDFIKGAKVVQLEDLALKFNLKTQEVIERLENLQEA
GRITGVMDDRGKFIFISEEELKAVAKFIKQRGRISIAELAESSNTLITLQ
EKENSKSVIQTSA
Run BLAST on NCBI

transcript from alignment at scaffold_58:1092205..1099673+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00070870 ID=TCONS_00070870|Name=TCONS_00070870|organism=Clytia hemisphaerica|type=transcript|length=7469bp|location=Sequence derived from alignment at scaffold_58:1092205..1099673+ (Clytia hemisphaerica)
GGCGTATCATCAAGTAGCGGAATACCGGCATGGCTGCTGATTGAAGAAGg
caattttttaatgatttttggtCGTAGGACTTTTTGGACTTTTGGTGGTT
TTTGACTgtcattttggtgttttttgtaATACTCCTAGGTAGGTTGATCT
ACATTTGATTTATTTAGAGGTTAAGTCAGCTTTATACTGCTTTATATCAA
GACTGTTAAATCTCTAGTTTGCGCGATATCAACAAAGAAGTGtacgaccc
tgccggtgcacccgacagtcgggtgttttgtcgggtgctgaaatttctaa
atttgcgaaaacacccgacaaatagtgcacccgacagtcgggtgttttgt
cgggtgctgaaatttctaaatttgcgaaaacacccgacaaatagtgcacc
cgacagtcgggtgcttaAATTCCTAACTTAGTAAAAACACCCGACGATCA
ACACCTGACATCGCCTAATGGGCATTTTGCGGGTTTACGCCCTATACTAT
TTCCCGCTATCTTTGCCATCTTTGCCGATGCCGTGGACGTCAGTCAAGGC
GCTATTGTCACTGGGGCATAAAAGGGCTGGCGTGTAAAATCGAATCTGCG
ATCGGAACTACCTGAGGCTTTGTAGGGGTCTTCGATTCCTAATCGGTGAA
AACAATTTCGGGGGCAgaggaaagtgacgaaaattctaataagcttcggc
gtaataagggccggtgcaTCTATCACCCAAACTCGAGTCGAACCTTAGTT
TgcttttttgatttatgatattCTGACAGCACTCTGTTGTTATCCGTGAA
ACGATTGTATCGCATCCatcagtaaaattaaaaagtgcgaTGCAAGTGGT
CCTGGGTACGATTTGGGCGCGCAACCTCGTCCTGTGTATCCTAGGTTCTT
TTACGATATTAATTATTACTGATCGATACGATAGAAAGGCCATACCTGAC
ATTAACCTTTACCCCCGGGAACCGACCTCCCATGTCAACTAAATCTCTCA
ATATCaatcattattttttcagaGTCGCAAATAAGAGAAAATGAATCAAT
TAGCGGAACAGGTGATCACTTTTAATTTGATATTTACATTTTAGTCGTAA
AAAATTTGCTGTGTCTTTCTTTCGATTCTGTACTTTGATCAAATATCAAA
TCAATGTTtcgatattcttaaattccagCCTGCACTCGATGGTCAATCTA
GTTCTCCGTGTTTAGGTTTGAGCATCGATGGTTTGAGGCATGACAATCCG
TTCacttttttctcttcttttcttcgTTTTAGTCTTACATTCTGATGGCG
AAACACGCTGACGTGCTCTGGCTTATCCAAGTAANATTGTCtgtaagacc
atgttcagacgttacggtttcatATCGTTCCGGTACGATTTCTGTTACGG
ATCGATAGTGTTCATatttggtttcggaacgtttcggggCAAGAAAATGG
AGCGGTTCCGTTCCAATGAAACCCTTTTGACCTGTTTTGCTTAGTaattg
taacgtcttcttttttgatgttTCAAATTTTGGCGCTCACAATTGTTTTG
CAACCGGTCGTTTCGGAAcgatacggaaccgtaacgtctgaacatggtct
aaattattgttaaagaataaaaaggttgttccaatttcttcttttgatca
gCATCACACATTGACCATAGCGATATACACCCACTTTTTTCTTttgggtg
ataaaagagaagagaaaaattgCCCCAGCCATCCAAACAGTTTGCATGTA
CGTAATGGTTACTTGTACAAGAACAGTGGTGGTACGCTAAATAGATAGAA
CAAAAAATTCGGCAAAGTAGTGTGTCGTTACAATACGAAAACCCAGGTAA
TATATAGCGTCAAGTTGACGAAGTTACTCAATCAGCTCAGGACAAATTGA
ACgttgcttaaaaatttaaagacACGCAATTNgataaaagatcgatgata
gatcgataactaatcataagcttgaaaaaatcttgagtatcgatcctcta
tcgatctcctatccggatcgttaagtaatccatccatcacatatcgatcc
gtcatcgagccattccgatgatcgatcctatcacAAGTATCACAAGTGTT
ACgcacgcgtaagccaaatcgggAATTACGAACTACCTCTAAATTGAcaa
gtacaggagaaaaaaaatcaaaattcaaaatggcggccaagcccacgctg
ataactataaaaaatcttcgtttttcaatcagctattgcagctcaattaa
tcaatgaaataatttgaattaaaaagctggccattccagaaaatttttgt
taccccccgtcggacgacgtgcattttaaaatttttcctagtcagaaagt
ctgccgtatactatcttcgcttttttgatttgatttgattgatagCGCTG
CGATAGAACTACTTTTCCACCATCAGATTttcaaaggcaaaaagtagttg
agctccagctcctggactaAATTTTTCCTAGtctcggaaataatttttct
tttccagttatggtcggaaattccgataaaaatccatgtacttttgcaaa
atgcatcagaaattccactcttttttaccttttttaattcaattgcctta
gaaattcatacattttcttctatCGCANCGACAAagtgcacccgactgtc
gggtgttaaaatttctaacttcgagcacccgacaacagcacccgactgtc
gggtgcaccggcagggtcgtaGAAGTGTGCACTTTTTAACTTTATTTATA
GTTTTATTGTTCGATTCCCATTCATTAGAGTCCcttgcccagttggcgac
cgctCTAGCTGGCAACCAAttgtctttgaacccagaaagtacaaaaacaa
acctctgaagaatttcttttgacttAGTTATGTACCGTGACCTATCAGTA
TAGACCaggtccgcgctcgataggatcgatcatcggaacggctcgatggt
ggatcgatatgtgatcgatggattacttaacgatccggatgggAGATCAA
TGGAAgattcaagactttttaatggctacattaaaaagtcttgagtatcg
atccttcgttggaTCCATTAAtcaagctagtatttcaatcaagtatatcg
attcgtcatcgatcgttaattNgaacctttcatgaatcgaaataaataaa
agtatttatctaaagtgaagattacatttcaaaataaaacgatttccaaa
ccaacctaaagtcattgtctgccaactaaaaatttctctgcagGGTCACT
GGTAttaaggagttacgacttcagactttagattccaattcttgtatagg
ctgcaactacactgccaaatgatctgtattacaaatacttccaaatgggt
ccataagttacgaaaatgaaattatcatctagcacgggggttttgttttt
aaaaacaaacttcaaaataaaattatcaCTTACTTATATAATCCATTTGA
TGCTGGTCAAAAATGGAGGGGggtatttgtgacatttttgttgAGGTTTT
TCATTTAGCCCCATAAAATGTGCTAAGTTTGAGGTTGACAACTGAAACTT
TAGTATGGTTAGGCTGAATAATTTTGCTTTCTAGACATATAAGTATCTTT
TATGAGGTTTACTTGAGATATGCTATTTTGAAGTAGGAGCCAAAGTTTAG
GTTAACACGGCCTGAGGTTGACACTATTAGGGTTCTTTGACTCCCTGTAA
GTTGACTTTTGAATCAGATTTTGGATATGTTAAAGCTCTGAAATTATCTC
AAAGGATTGAAAATTGCTCTGAAGGGTGTTATTTGAGGTTGACATTTATT
GAATGGCTCCAATTAGTTTTGTTGCATAAATGAATCAGGGAGTCAAAAAA
GGGATCGAGGAGCAAAAAGGGACCAAGGAGTGAATCAGGAACAAAAGAAA
TGGCAAAAAGGGATCAAGGAGGGAAAAAAAGATTAGGGATAAAAAGGGAT
CAGGGAGCAAAAAGCGGGAAGGAGCAAGGACTTGATGAACTACTCTGTAT
ATTAAGGCAGTatatagacttaaactccttTATCAATGATATTATGGGAT
TTGGAGTGCAAaccgattttactttcattttcagtagtttcattttttat
ctcaagccaacatcttagcaacggggtgattgcccatagttacaggagTT
TTGATAATCTTTGACAATCTCACtaaattatttgaattttttaaattttt
acaatcAAGTCCACATTAGGAAATGTATGAATCATTCAGCTGGCCAGAAT
CTTCAGAATACCCTGCAagattttgctttattttttttggataaaGAAGT
CAGTTtcaaatacaaaggaatcttgaTTCTGGATAGATAAGTTTTTCCCA
TtacatgtttacaaaaatttgaaaacgggCTCAAAGATGCTTGGTTTGAG
GGCTTGACAAGACTGAAAAATGCTTATAAGGATGCGTAAATCCCAAgcaa
aattttaggaaaattccAACAAATTCTGATCCACACTAGACCGTTCCCGT
TgtcataaaatttagtaaatACTGCTTGCGCTTGGAATAAATCACTTTAT
TTGAcaaggaagattttagtcagGGGATTGAGAAGTGTTGAATGCCCTTC
ATCCTGGAAACCTAGTGTTAACTCCCCAGGTAGTTTACAATAAGCTCTCT
ACCGTCAAGAATAACATACAAAATAAGTGAGCAAGCAGTCGAAGAGACTa
cttcgtttttgttgcagcaTTGAATTGTTGTTAAGGGAAAAAGAGAAGTA
AGTCTaacctagtttctaatcctggtNCCCTAATATGATATTTTACAGAt
aataaataaacaataaaatatataaagacGATGGCACAGTCACATGGAAG
CAATGGAGCAGACCAACAGCAAACTGCAGCAGTTGTTTGGTTGATTGTTG
CTTTGGTCATTGGAATTGTTCTTTATCTATCCTACTTCTTTTCAAGTCaa
gggaaaaagaaaaaagaaagtaagTCAACCTCTACCCTATAGCGCACTTT
CTAATATGCCCTTTACGTTGCGTTGGGGTTGTTCATTAGAGCTTATGACT
TTAGTTTGAATTGAATATTTGTTTTGGAGGACGCAAcggcctattgaata
actaattattcCACAACTGTtacagttacctagagacaagatcatttatc
acgtttttattggccgagggaaagtaatgtatgtggagtaatttgttatt
caataggctgtagcattctccaaaacaactatcaTAGAGGTTATTAGTAT
GGCTTTCGTAAAATGTATCATTAATCAACCacttttttgattgattttac
taGAAAAGACACCAGTTCCTGCAAGACCAAATGAGGCATCTCAAGGACCG
GCAGTTGTTGGGCCAAGTGGGCGCCGGAGAGGTCCAAGAATGAGAGTTCA
AAGGAGAGATGAACCTGAACCTGATGATAATTTTGgtaaaagaaattgaa
tttgattGAATTACTATAATCATTATACTATCATTGGGGATAgaattttg
tttagaaataacTGTTTGTATTTCTTTCTCTCTCTCCCTTGTTATCTTTC
AATGTTTCCTTCTTTACAGGAGACTTTGGAGGAGAAAGCGATAACGAAGT
AATAGATGCATCAGGAGAAGGTGGAGGGAAAATTGGTGCCAAGAAACGCG
CAAAGATGATTGCCAAAGCTGAGAAGAAAGCCGAACGAGAGGTTTGGAGC
CTTCGAATGAGTTTTTTGTTGCTTCTAACGCATTCTCTCCTTCATTGATG
GCTCTTTCTCTGAAGTCTTGACTCTCTACGCAATTACTACAAAATTAATG
TTAGGTCAGAGAAAAAACTTGAATATGTTTTTCCCTTTGAACTCGCACGA
CTTTCTttaaacaacgctttttttcaTTGCAGGCGTTGGAAGAAGAAAGA
GCAGAACGAAAAAAACAAGAAGCACTTTtagagaaagaaagagaaaaaga
tgcAAAACAAAGAGAAGCTGAGGAACTAGCCAAGGTTTGAACAAAAAACT
TGCTACTgatatttatgaaaataatattGATCTAAGTcatgataaactta
aattttattatcTTCTCAGACATCGTCGAAAAAACCTGcatccattcatt
cattcattcgtcCATCCATTCTTTGTTCTTGTAGGAAGAAGAGCTTcgcc
ttttgaaagaaaagaaagaaaaagaggaATATGAAGAATATTTGAAACTG
AAAGAATCTTTCATCATCGAAGAATCTGGCGAAATTGGAGTGCTATCCGA
GGAAGAGGTAAAGTCCTCTCTTGTGAACTTCGGTCTTATCAAACTTAACA
ACATCTTAAGAAAATACCAGAGTACAAAGTACAATTGTATAGTGAAGCAT
AATGTttgaaatttactcaaatataccttTTAATTTATCTTTTAGAGTCA
AGCCTTGCTACAAGAATTCATCGATTTCATAAAGGTACGGGTGTCTACCA
TGGACAGTTTTTTTTAGCGTCAGCTTTAATTTGATCTTAGGTGCTTGTGT
AAAGCTCTTTCCAATCAGAATAaacaatataacagtttttggAGAATTCC
TAGAAGTAGccctcgaaatattttttttgcccTCAACTTTCAGGATTTAA
TGTTTGCTTACAGCAAATATATACAACTTccatatttttctcttcttgtA
GGGGGCCAAGGTTGTACAACTAGAGGATTTAGCTTTGAAATTCAACTTAA
AAACACAAGAAGTTATTGAAAGATTGGAAAACCTTCAAGAAGCAGGACGG
ATAACAGGTATGTACCAACGAGCGTGGacccttttctttttcagggaATA
AAGCCCtcacaaaatttacaaaaacggAGAATTTAAATGAAACCTTTTAA
AGAAGTAAGCAACCACAGGGGCATATTTATGAGATGAGCtcgagttttta
caagatacttcactaattggtcatttgaagtggtagagatgacgcgttct
ttagaaaaagtagcaaaattgttttatcactggttaacgaccaaccaaat
caaataagagttTGTCCCATATTTATATGGAGGGCAGGGGTAGGGATTTT
GAAATGAGAAAATGTACATTATATCAAAGCTTTTCTTGCTTACTGTGAGT
TTTTTTCAAGAAGAAAGAATTAGGTGGTTTTTGGGATGATCGACTCATCT
TCTTGTAATTTATTTTCTTGCAGGGGTGATGGACGATCGTGGgaagttta
ttttcatttctgaaGAAGAGCTGAAAGCCGTCGCGAAATTCATCAAACAG
CGTGGTCGAATTTCTATCGCTGAACTCGCCGAATCTTCCAATACCCTCAT
CACGTTACAGGagaaagaaaattcgaaatCTGTTATTCAAACCTCTGCTT
AATGGAGAGAATTTTTAGAGACCTTTTTTAAATGAATGGTGTTGGCCTTT
TTGTAAATAGAATTTTATCTTGatattatttatttcttttttggaataaa
ttatgcaatcaatcaaatt

Coding sequence (CDS) from alignment at scaffold_58:1092205..1099673+

>TCONS_00070870 ID=TCONS_00070870|Name=TCONS_00070870|organism=Clytia hemisphaerica|type=CDS|length=7536bp|location=Sequence derived from alignment at scaffold_58:1092205..1099673+ (Clytia hemisphaerica)
ATGGCACAGTCACATGGAAGCAATGGAGCAGACCAACAGCAAACTGCAGC
AGTTGTTTGGTTGATTGTTGCTTTGGTCATTGGAATTGTTCTTTATCTAT
CCTACTTCTTTTCAAGTCaagggaaaaagaaaaaagaaaAAAAGACACCA
GTTCCTGCAAGACCAAATGAGGCATCTCAAGGACCGGCAGTTGTTGGGCC
AAGTGGGCGCCGGAGAGGTCCAAGAATGAGAGTTCAAAGGAGAGATGAAC
CTGAACCTGATGATAATTTTGGAGACTTTGGAGGAGAAAGCGATAACGAA
GTAATAGATGCATCAGGAGAAGGTGGAGGGAAAATTGGTGCCAAGAAACG
CGCAAAGATGATTGCCAAAGCTGAGAAGAAAGCCGAACGAGAGGCGTTGG
AAGAAGAAAGAGCAGAACGAAAAAAACAAGAAGCACTTTtagagaaagaa
agagaaaaagatgcAAAACAAAGAGAAGCTGAGGAACTAGCCAAGGAAGA
AGAGCTTcgccttttgaaagaaaagaaagaaaaagaggaATATGAAGAAT
ATTTGAAACTGAAAGAATCTTTCATCATCGAAGAATCTGGCGAAATTGGA
GTGCTATCCGAGGAAGAGAGTCAAGCCTTGCTACAAGAATTCATCGATTT
CATAAAGGGGGCCAAGGTTGTACAACTAGAGGATTTAGCTTTGAAATTCA
ACTTAAAAACACAAGAAGTTATTGAAAGATTGGAAAACCTTCAAGAAGCA
GGACGGATAACAGGGGTGATGGACGATCGTGGgaagtttattttcatttc
tgaaGAAGAGCTGAAAGCCGTCGCGAAATTCATCAAACAGCGTGGTCGAA
TTTCTATCGCTGAACTCGCCGAATCTTCCAATACCCTCATCACGTTACAG
GagaaagaaaattcgaaatCTGTTATTCAAACCTCTGCTTAAATGGCACA
GTCACATGGAAGCAATGGAGCAGACCAACAGCAAACTGCAGCAGTTGTTT
GGTTGATTGTTGCTTTGGTCATTGGAATTGTTCTTTATCTATCCTACTTC
TTTTCAAGTCaagggaaaaagaaaaaagaaaAAAAGACACCAGTTCCTGC
AAGACCAAATGAGGCATCTCAAGGACCGGCAGTTGTTGGGCCAAGTGGGC
GCCGGAGAGGTCCAAGAATGAGAGTTCAAAGGAGAGATGAACCTGAACCT
GATGATAATTTTGGAGACTTTGGAGGAGAAAGCGATAACGAAGTAATAGA
TGCATCAGGAGAAGGTGGAGGGAAAATTGGTGCCAAGAAACGCGCAAAGA
TGATTGCCAAAGCTGAGAAGAAAGCCGAACGAGAGGCGTTGGAAGAAGAA
AGAGCAGAACGAAAAAAACAAGAAGCACTTTtagagaaagaaagagaaaa
agatgcAAAACAAAGAGAAGCTGAGGAACTAGCCAAGGAAGAAGAGCTTc
gccttttgaaagaaaagaaagaaaaagaggaATATGAAGAATATTTGAAA
CTGAAAGAATCTTTCATCATCGAAGAATCTGGCGAAATTGGAGTGCTATC
CGAGGAAGAGAGTCAAGCCTTGCTACAAGAATTCATCGATTTCATAAAGG
GGGCCAAGGTTGTACAACTAGAGGATTTAGCTTTGAAATTCAACTTAAAA
ACACAAGAAGTTATTGAAAGATTGGAAAACCTTCAAGAAGCAGGACGGAT
AACAGGGGTGATGGACGATCGTGGgaagtttattttcatttctgaaGAAG
AGCTGAAAGCCGTCGCGAAATTCATCAAACAGCGTGGTCGAATTTCTATC
GCTGAACTCGCCGAATCTTCCAATACCCTCATCACGTTACAGGagaaaga
aaattcgaaatCTGTTATTCAAACCTCTGCTTAAATGGCACAGTCACATG
GAAGCAATGGAGCAGACCAACAGCAAACTGCAGCAGTTGTTTGGTTGATT
GTTGCTTTGGTCATTGGAATTGTTCTTTATCTATCCTACTTCTTTTCAAG
TCaagggaaaaagaaaaaagaaaAAAAGACACCAGTTCCTGCAAGACCAA
ATGAGGCATCTCAAGGACCGGCAGTTGTTGGGCCAAGTGGGCGCCGGAGA
GGTCCAAGAATGAGAGTTCAAAGGAGAGATGAACCTGAACCTGATGATAA
TTTTGGAGACTTTGGAGGAGAAAGCGATAACGAAGTAATAGATGCATCAG
GAGAAGGTGGAGGGAAAATTGGTGCCAAGAAACGCGCAAAGATGATTGCC
AAAGCTGAGAAGAAAGCCGAACGAGAGGCGTTGGAAGAAGAAAGAGCAGA
ACGAAAAAAACAAGAAGCACTTTtagagaaagaaagagaaaaagatgcAA
AACAAAGAGAAGCTGAGGAACTAGCCAAGGAAGAAGAGCTTcgccttttg
aaagaaaagaaagaaaaagaggaATATGAAGAATATTTGAAACTGAAAGA
ATCTTTCATCATCGAAGAATCTGGCGAAATTGGAGTGCTATCCGAGGAAG
AGAGTCAAGCCTTGCTACAAGAATTCATCGATTTCATAAAGGGGGCCAAG
GTTGTACAACTAGAGGATTTAGCTTTGAAATTCAACTTAAAAACACAAGA
AGTTATTGAAAGATTGGAAAACCTTCAAGAAGCAGGACGGATAACAGGGG
TGATGGACGATCGTGGgaagtttattttcatttctgaaGAAGAGCTGAAA
GCCGTCGCGAAATTCATCAAACAGCGTGGTCGAATTTCTATCGCTGAACT
CGCCGAATCTTCCAATACCCTCATCACGTTACAGGagaaagaaaattcga
aatCTGTTATTCAAACCTCTGCTTAAATGGCACAGTCACATGGAAGCAAT
GGAGCAGACCAACAGCAAACTGCAGCAGTTGTTTGGTTGATTGTTGCTTT
GGTCATTGGAATTGTTCTTTATCTATCCTACTTCTTTTCAAGTCaaggga
aaaagaaaaaagaaaAAAAGACACCAGTTCCTGCAAGACCAAATGAGGCA
TCTCAAGGACCGGCAGTTGTTGGGCCAAGTGGGCGCCGGAGAGGTCCAAG
AATGAGAGTTCAAAGGAGAGATGAACCTGAACCTGATGATAATTTTGGAG
ACTTTGGAGGAGAAAGCGATAACGAAGTAATAGATGCATCAGGAGAAGGT
GGAGGGAAAATTGGTGCCAAGAAACGCGCAAAGATGATTGCCAAAGCTGA
GAAGAAAGCCGAACGAGAGGCGTTGGAAGAAGAAAGAGCAGAACGAAAAA
AACAAGAAGCACTTTtagagaaagaaagagaaaaagatgcAAAACAAAGA
GAAGCTGAGGAACTAGCCAAGGAAGAAGAGCTTcgccttttgaaagaaaa
gaaagaaaaagaggaATATGAAGAATATTTGAAACTGAAAGAATCTTTCA
TCATCGAAGAATCTGGCGAAATTGGAGTGCTATCCGAGGAAGAGAGTCAA
GCCTTGCTACAAGAATTCATCGATTTCATAAAGGGGGCCAAGGTTGTACA
ACTAGAGGATTTAGCTTTGAAATTCAACTTAAAAACACAAGAAGTTATTG
AAAGATTGGAAAACCTTCAAGAAGCAGGACGGATAACAGGGGTGATGGAC
GATCGTGGgaagtttattttcatttctgaaGAAGAGCTGAAAGCCGTCGC
GAAATTCATCAAACAGCGTGGTCGAATTTCTATCGCTGAACTCGCCGAAT
CTTCCAATACCCTCATCACGTTACAGGagaaagaaaattcgaaatCTGTT
ATTCAAACCTCTGCTTAAATGGCACAGTCACATGGAAGCAATGGAGCAGA
CCAACAGCAAACTGCAGCAGTTGTTTGGTTGATTGTTGCTTTGGTCATTG
GAATTGTTCTTTATCTATCCTACTTCTTTTCAAGTCaagggaaaaagaaa
aaagaaaAAAAGACACCAGTTCCTGCAAGACCAAATGAGGCATCTCAAGG
ACCGGCAGTTGTTGGGCCAAGTGGGCGCCGGAGAGGTCCAAGAATGAGAG
TTCAAAGGAGAGATGAACCTGAACCTGATGATAATTTTGGAGACTTTGGA
GGAGAAAGCGATAACGAAGTAATAGATGCATCAGGAGAAGGTGGAGGGAA
AATTGGTGCCAAGAAACGCGCAAAGATGATTGCCAAAGCTGAGAAGAAAG
CCGAACGAGAGGCGTTGGAAGAAGAAAGAGCAGAACGAAAAAAACAAGAA
GCACTTTtagagaaagaaagagaaaaagatgcAAAACAAAGAGAAGCTGA
GGAACTAGCCAAGGAAGAAGAGCTTcgccttttgaaagaaaagaaagaaa
aagaggaATATGAAGAATATTTGAAACTGAAAGAATCTTTCATCATCGAA
GAATCTGGCGAAATTGGAGTGCTATCCGAGGAAGAGAGTCAAGCCTTGCT
ACAAGAATTCATCGATTTCATAAAGGGGGCCAAGGTTGTACAACTAGAGG
ATTTAGCTTTGAAATTCAACTTAAAAACACAAGAAGTTATTGAAAGATTG
GAAAACCTTCAAGAAGCAGGACGGATAACAGGGGTGATGGACGATCGTGG
gaagtttattttcatttctgaaGAAGAGCTGAAAGCCGTCGCGAAATTCA
TCAAACAGCGTGGTCGAATTTCTATCGCTGAACTCGCCGAATCTTCCAAT
ACCCTCATCACGTTACAGGagaaagaaaattcgaaatCTGTTATTCAAAC
CTCTGCTTAAATGGCACAGTCACATGGAAGCAATGGAGCAGACCAACAGC
AAACTGCAGCAGTTGTTTGGTTGATTGTTGCTTTGGTCATTGGAATTGTT
CTTTATCTATCCTACTTCTTTTCAAGTCaagggaaaaagaaaaaagaaaA
AAAGACACCAGTTCCTGCAAGACCAAATGAGGCATCTCAAGGACCGGCAG
TTGTTGGGCCAAGTGGGCGCCGGAGAGGTCCAAGAATGAGAGTTCAAAGG
AGAGATGAACCTGAACCTGATGATAATTTTGGAGACTTTGGAGGAGAAAG
CGATAACGAAGTAATAGATGCATCAGGAGAAGGTGGAGGGAAAATTGGTG
CCAAGAAACGCGCAAAGATGATTGCCAAAGCTGAGAAGAAAGCCGAACGA
GAGGCGTTGGAAGAAGAAAGAGCAGAACGAAAAAAACAAGAAGCACTTTt
agagaaagaaagagaaaaagatgcAAAACAAAGAGAAGCTGAGGAACTAG
CCAAGGAAGAAGAGCTTcgccttttgaaagaaaagaaagaaaaagaggaA
TATGAAGAATATTTGAAACTGAAAGAATCTTTCATCATCGAAGAATCTGG
CGAAATTGGAGTGCTATCCGAGGAAGAGAGTCAAGCCTTGCTACAAGAAT
TCATCGATTTCATAAAGGGGGCCAAGGTTGTACAACTAGAGGATTTAGCT
TTGAAATTCAACTTAAAAACACAAGAAGTTATTGAAAGATTGGAAAACCT
TCAAGAAGCAGGACGGATAACAGGGGTGATGGACGATCGTGGgaagttta
ttttcatttctgaaGAAGAGCTGAAAGCCGTCGCGAAATTCATCAAACAG
CGTGGTCGAATTTCTATCGCTGAACTCGCCGAATCTTCCAATACCCTCAT
CACGTTACAGGagaaagaaaattcgaaatCTGTTATTCAAACCTCTGCTT
AAATGGCACAGTCACATGGAAGCAATGGAGCAGACCAACAGCAAACTGCA
GCAGTTGTTTGGTTGATTGTTGCTTTGGTCATTGGAATTGTTCTTTATCT
ATCCTACTTCTTTTCAAGTCaagggaaaaagaaaaaagaaaAAAAGACAC
CAGTTCCTGCAAGACCAAATGAGGCATCTCAAGGACCGGCAGTTGTTGGG
CCAAGTGGGCGCCGGAGAGGTCCAAGAATGAGAGTTCAAAGGAGAGATGA
ACCTGAACCTGATGATAATTTTGGAGACTTTGGAGGAGAAAGCGATAACG
AAGTAATAGATGCATCAGGAGAAGGTGGAGGGAAAATTGGTGCCAAGAAA
CGCGCAAAGATGATTGCCAAAGCTGAGAAGAAAGCCGAACGAGAGGCGTT
GGAAGAAGAAAGAGCAGAACGAAAAAAACAAGAAGCACTTTtagagaaag
aaagagaaaaagatgcAAAACAAAGAGAAGCTGAGGAACTAGCCAAGGAA
GAAGAGCTTcgccttttgaaagaaaagaaagaaaaagaggaATATGAAGA
ATATTTGAAACTGAAAGAATCTTTCATCATCGAAGAATCTGGCGAAATTG
GAGTGCTATCCGAGGAAGAGAGTCAAGCCTTGCTACAAGAATTCATCGAT
TTCATAAAGGGGGCCAAGGTTGTACAACTAGAGGATTTAGCTTTGAAATT
CAACTTAAAAACACAAGAAGTTATTGAAAGATTGGAAAACCTTCAAGAAG
CAGGACGGATAACAGGGGTGATGGACGATCGTGGgaagtttattttcatt
tctgaaGAAGAGCTGAAAGCCGTCGCGAAATTCATCAAACAGCGTGGTCG
AATTTCTATCGCTGAACTCGCCGAATCTTCCAATACCCTCATCACGTTAC
AGGagaaagaaaattcgaaatCTGTTATTCAAACCTCTGCTTAAATGGCA
CAGTCACATGGAAGCAATGGAGCAGACCAACAGCAAACTGCAGCAGTTGT
TTGGTTGATTGTTGCTTTGGTCATTGGAATTGTTCTTTATCTATCCTACT
TCTTTTCAAGTCaagggaaaaagaaaaaagaaaAAAAGACACCAGTTCCT
GCAAGACCAAATGAGGCATCTCAAGGACCGGCAGTTGTTGGGCCAAGTGG
GCGCCGGAGAGGTCCAAGAATGAGAGTTCAAAGGAGAGATGAACCTGAAC
CTGATGATAATTTTGGAGACTTTGGAGGAGAAAGCGATAACGAAGTAATA
GATGCATCAGGAGAAGGTGGAGGGAAAATTGGTGCCAAGAAACGCGCAAA
GATGATTGCCAAAGCTGAGAAGAAAGCCGAACGAGAGGCGTTGGAAGAAG
AAAGAGCAGAACGAAAAAAACAAGAAGCACTTTtagagaaagaaagagaa
aaagatgcAAAACAAAGAGAAGCTGAGGAACTAGCCAAGGAAGAAGAGCT
TcgccttttgaaagaaaagaaagaaaaagaggaATATGAAGAATATTTGA
AACTGAAAGAATCTTTCATCATCGAAGAATCTGGCGAAATTGGAGTGCTA
TCCGAGGAAGAGAGTCAAGCCTTGCTACAAGAATTCATCGATTTCATAAA
GGGGGCCAAGGTTGTACAACTAGAGGATTTAGCTTTGAAATTCAACTTAA
AAACACAAGAAGTTATTGAAAGATTGGAAAACCTTCAAGAAGCAGGACGG
ATAACAGGGGTGATGGACGATCGTGGgaagtttattttcatttctgaaGA
AGAGCTGAAAGCCGTCGCGAAATTCATCAAACAGCGTGGTCGAATTTCTA
TCGCTGAACTCGCCGAATCTTCCAATACCCTCATCACGTTACAGGagaaa
gaaaattcgaaatCTGTTATTCAAACCTCTGCTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044076XLOC_044076Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00070870-exon-scaffold_58-1491911889:1092205..1092342TCONS_00070870-exon-scaffold_58-1491911889:1092205..1092342Clytia hemisphaericaexon
TCONS_00070870-exon-scaffold_58-1510915933:1092205..1092342TCONS_00070870-exon-scaffold_58-1510915933:1092205..1092342Clytia hemisphaericaexon
TCONS_00070870-exon-scaffold_58-1575043694:1092205..1092342TCONS_00070870-exon-scaffold_58-1575043694:1092205..1092342Clytia hemisphaericaexon
TCONS_00070870-exon-scaffold_58-1491911889:1097003..1097173TCONS_00070870-exon-scaffold_58-1491911889:1097003..1097173Clytia hemisphaericaexon
TCONS_00070870-exon-scaffold_58-1510915933:1097003..1097173TCONS_00070870-exon-scaffold_58-1510915933:1097003..1097173Clytia hemisphaericaexon
TCONS_00070870-exon-scaffold_58-1575043694:1097003..1097173TCONS_00070870-exon-scaffold_58-1575043694:1097003..1097173Clytia hemisphaericaexon
TCONS_00070870-exon-scaffold_58-1491911889:1097508..1097639TCONS_00070870-exon-scaffold_58-1491911889:1097508..1097639Clytia hemisphaericaexon
TCONS_00070870-exon-scaffold_58-1510915933:1097508..1097639TCONS_00070870-exon-scaffold_58-1510915933:1097508..1097639Clytia hemisphaericaexon
TCONS_00070870-exon-scaffold_58-1575043694:1097508..1097639TCONS_00070870-exon-scaffold_58-1575043694:1097508..1097639Clytia hemisphaericaexon
TCONS_00070870-exon-scaffold_58-1491911889:1097774..1097895TCONS_00070870-exon-scaffold_58-1491911889:1097774..1097895Clytia hemisphaericaexon
TCONS_00070870-exon-scaffold_58-1510915933:1097774..1097895TCONS_00070870-exon-scaffold_58-1510915933:1097774..1097895Clytia hemisphaericaexon
TCONS_00070870-exon-scaffold_58-1575043694:1097774..1097895TCONS_00070870-exon-scaffold_58-1575043694:1097774..1097895Clytia hemisphaericaexon
TCONS_00070870-exon-scaffold_58-1491911889:1098087..1098188TCONS_00070870-exon-scaffold_58-1491911889:1098087..1098188Clytia hemisphaericaexon
TCONS_00070870-exon-scaffold_58-1510915933:1098087..1098188TCONS_00070870-exon-scaffold_58-1510915933:1098087..1098188Clytia hemisphaericaexon
TCONS_00070870-exon-scaffold_58-1575043694:1098087..1098188TCONS_00070870-exon-scaffold_58-1575043694:1098087..1098188Clytia hemisphaericaexon
TCONS_00070870-exon-scaffold_58-1491911889:1098339..1098461TCONS_00070870-exon-scaffold_58-1491911889:1098339..1098461Clytia hemisphaericaexon
TCONS_00070870-exon-scaffold_58-1510915933:1098339..1098461TCONS_00070870-exon-scaffold_58-1510915933:1098339..1098461Clytia hemisphaericaexon
TCONS_00070870-exon-scaffold_58-1575043694:1098339..1098461TCONS_00070870-exon-scaffold_58-1575043694:1098339..1098461Clytia hemisphaericaexon
TCONS_00070870-exon-scaffold_58-1491911889:1098600..1098638TCONS_00070870-exon-scaffold_58-1491911889:1098600..1098638Clytia hemisphaericaexon
TCONS_00070870-exon-scaffold_58-1510915933:1098600..1098638TCONS_00070870-exon-scaffold_58-1510915933:1098600..1098638Clytia hemisphaericaexon
TCONS_00070870-exon-scaffold_58-1575043694:1098600..1098638TCONS_00070870-exon-scaffold_58-1575043694:1098600..1098638Clytia hemisphaericaexon
TCONS_00070870-exon-scaffold_58-1491911889:1098856..1098961TCONS_00070870-exon-scaffold_58-1491911889:1098856..1098961Clytia hemisphaericaexon
TCONS_00070870-exon-scaffold_58-1510915933:1098856..1098961TCONS_00070870-exon-scaffold_58-1510915933:1098856..1098961Clytia hemisphaericaexon
TCONS_00070870-exon-scaffold_58-1575043694:1098856..1098961TCONS_00070870-exon-scaffold_58-1575043694:1098856..1098961Clytia hemisphaericaexon
TCONS_00070870-exon-scaffold_58-1491911889:1099378..1099673TCONS_00070870-exon-scaffold_58-1491911889:1099378..1099673Clytia hemisphaericaexon
TCONS_00070870-exon-scaffold_58-1510915933:1099378..1099673TCONS_00070870-exon-scaffold_58-1510915933:1099378..1099673Clytia hemisphaericaexon
TCONS_00070870-exon-scaffold_58-1575043694:1099378..1099673TCONS_00070870-exon-scaffold_58-1575043694:1099378..1099673Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00070870-proteinTCONS_00070870-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_58supercontigscaffold_58:1092205..1099673 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
77.425	69.532	56.5133	61.6467	53.9884	44.6268	96.6353	100.474	52.6619	54.3053	41.8588	35.7569	25.3487	24.6416	35.6298	39.084	41.9339	38.5651	18.7829	25.0329	25.0202	28.9352	54.038	48.4033	37.9788	37.8947	22.0819	18.5783	50.7275	44.0134
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR019153DDRGK_dom-contain
IPR011991WHTH_DNA-bd_dom
Blast
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BLAST of TCONS_00070870 vs. Swiss-Prot (Human)
Match: DDRGK (DDRGK domain-containing protein 1 OS=Homo sapiens GN=DDRGK1 PE=1 SV=2)

HSP 1 Score: 110.923 bits (276), Expect = 2.804e-27
Identity = 53/86 (61.63%), Postives = 70/86 (81.40%), Query Frame = 3 
Query:  810 FIDFIKGAKVVQLEDLALKFNLKTQEVIERLENLQEAGRITGVMDDRGKFIFISEEELKAVAKFIKQRGRISIAELAESSNTLITL 1067
            FI++IK +KVV LEDLA +  L+TQ+ I R+++L   G ITGV+DDRGKFI+I+ EEL AVA FI+QRGR+SIAELA++SN+LI  
Sbjct:  219 FINYIKQSKVVLLEDLASQVGLRTQDTINRIQDLLAEGTITGVIDDRGKFIYITPEELAAVANFIRQRGRVSIAELAQASNSLIAW 304
The following BLAST results are available for this feature:
BLAST of TCONS_00070870 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
DDRGK2.804e-2761.63DDRGK domain-containing protein 1 OS=Homo sapiens ... [more]
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