TCONS_00070897 (transcript) - C. hemisphaerica

Overview
NameTCONS_00070897
Unique NameTCONS_00070897
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1382

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00070897 ID=TCONS_00070897|Name=TCONS_00070897|organism=Clytia hemisphaerica|type=transcript|length=1382bp
GTTGGATATGCATTTTAgatgaaaaatgacaaatggGGTTTGATTTTGCG
ATGCAATATTTGATATTCTTCTTCACTTTCCTTGGTAATATGCCTTCCTC
TGCACAACAAAGCTGTTACATGAACTGCAATTGCTCAGGTACAGAGGTCT
CATGTGACGGTGCACCAAAAGACATTCTCAATGGAACCCCTCCCAAAAGC
AACATTACGAGACTGAGTCTGATCAACATGGAGTTAGAAAATGATGCGTT
ATTGACCAAATTCCTGGAGAACCTAACACAGCTTCAATATTTGGATTTAT
CATTAAATCAACTGACAGAAATACCGAAGCTGGATAATTTGGCCACGTTA
AACAATTTAGTTTTACGTCAAAACAAAATCGAAAACTTACCAAAAGAACT
AGCTGATATCgaattcaaaaatttaacaatCGACTTGTCAGAAAATCCAA
TAAACTGTAACTGTACAACGGTGTACATAGTAGAAAAGACACAAGAAATA
AAATACAAAGGGATATGTACACaacaaaacattaaaataaatgaACTGAA
TCAGACCATGGTTGATTGTGACCCTTGTTCAATAAATAATGGAGGTTGCT
CGTTAATCAAGACTTGCATTGCTGAAAATGCTCTGAATGTAGTATGTATC
TGTAATAATGGTTTTACTGGAGATTTCTGTCAGATATCTCCCACCAACCC
TGTACCATGCAAAATAAACAATTGTTTAAATGGCGGTGTTTGCTTTCACG
TTGAAAACACAAACTCTACATTCTGCGAGTGTGTTTCCACTGACTATAGT
GGTGACTTCTGCCAAAACAAAACAAGGAACGAATCCACTAGAAAAACCAC
CTTAAGCTTGAACGCTATTACTGCGATTATTGTCTCCTTATTGGTTTTAT
TGTTTGTGATAGTTTTCGGTTATTGGTATTGTGTACATTTGCGTCCGAAA
CGTAGAAGAATGCGAGAGAGCCGaaaaaagaaagcaaagaaTAGTTTCGA
TAGTCAAAACAGCATCGTCAATTACTATCTTCAGAACGAGGGTTACTTTC
ATGATGAGTCAACTAGCATACCAAATTCACCCAAAGAGGGCGAAGAGAAT
TCGTACCCACACGACCCTGCACATAACCGTTGGTTGCATGGACGAAGAAG
ATGTTCTacaattttggaagaaaaagCAAGTCGTGAGGGCAGTTGTatgg
atgaaaatgaaaagaaataaaatagtttttctttatactgaaatttgcaa
aatttgtgAAGCCTTATTTTCAACATAGAAATATCCTTAAAATCTTCTTA
ATCTTTTACCGTAATATATGTCCTAAATTGCATGTTTTGGAGTTATCAAA
GCCtacaaatgttcttaaaaagttgTTAGCCA
Run BLAST on NCBI

protein sequence of TCONS_00070897-protein

>TCONS_00070897-protein ID=TCONS_00070897-protein|Name=TCONS_00070897-protein|organism=Clytia hemisphaerica|type=polypeptide|length=395bp
MGFDFAMQYLIFFFTFLGNMPSSAQQSCYMNCNCSGTEVSCDGAPKDILN
GTPPKSNITRLSLINMELENDALLTKFLENLTQLQYLDLSLNQLTEIPKL
DNLATLNNLVLRQNKIENLPKELADIEFKNLTIDLSENPINCNCTTVYIV
EKTQEIKYKGICTQQNIKINELNQTMVDCDPCSINNGGCSLIKTCIAENA
LNVVCICNNGFTGDFCQISPTNPVPCKINNCLNGGVCFHVENTNSTFCEC
VSTDYSGDFCQNKTRNESTRKTTLSLNAITAIIVSLLVLLFVIVFGYWYC
VHLRPKRRRMRESRKKKAKNSFDSQNSIVNYYLQNEGYFHDESTSIPNSP
KEGEENSYPHDPAHNRWLHGRRRCSTILEEKASREGSCMDENEKK
Run BLAST on NCBI

transcript from alignment at scaffold_58:110643..112675-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00070897 ID=TCONS_00070897|Name=TCONS_00070897|organism=Clytia hemisphaerica|type=transcript|length=2033bp|location=Sequence derived from alignment at scaffold_58:110643..112675- (Clytia hemisphaerica)
GTTGGATATGCATTTTAGATGAAAAATGACAAATGGGGTTTGATTTTGCG
ATGCAATATTTGATATTCTTCTTCACTTTCCTTGGTAATATGCCTTCCTC
TGCACAACAAAGCTGTTACATGAACTGCAATTGCTCAGGTACAGAGGTCT
CATGTGACGGTGCACCAAAAGACATTCTCAATGGAACCCCTCCCAAAAGC
AACATTACGAGACTGAGTCTGATCAACATGGAGTTAGAAAATGATGCGTT
ATTGACCAAATTCCTGGAGAACCTAACACAGCTTCAATATTTGGATTTAT
CATTAAATCAACTGACAGAAATACCGAAGCTGGATAATTTGGCCACGTTA
AACAATTTAGTTTTACGTCAAAACAAAATCGAAAACTTACCAAAAGAACT
AGCTGATATCGAATTCAAAAATTTAACAATCGACTTGTCAGAAAATCCAA
TAAACTGTAACTGTACAACGGTGTACATAGTAGAAAAGACACAAGAAATA
AAATACAAAGGGATATGTACACAACAAAACATTAAAATAAATGAACTGAA
TCAGACCATGGTTGATTGTGACCCTTGTTCAATAAATAATGGAGGTTGCT
CGTTAATCAAGACTTGCATTGCTGAAAATGCTCTGAATGTAGTATGTATC
TGTAATAATGGTTTTACTGGAGATTTCTGTCAGATATCTCCCACCAACCC
TGTACCATGCAAAATAAACAATTGTTTAAATGGCGGTGTTTGCTTTCACG
TTGAAAACACAAACTCTACATTCTGCGAGTGTGTTTCCACTGACTATAGT
GGTGACTTCTGCCAAAACAAAACAAGGAACGAATCCACTAGAAAAACCAC
CTTAAGCTTGAACGCTATTACTGCGATTATTGTCTCCTTATTGGTTTTAT
TGTTTGTGATAGTTTTCGGTTATTGGTATTGTGTACATTTGCGTCCGAAA
CGTAGAAGAATGCGAGAGAGCCGAAAAAAGAAAGCAAAGAATAGTTTCGA
TAGTCAAAACAGCATCGTCAATTACTATCTTCAGGTAGGAATCATTGATG
TACTTAGAAATCGATTAGTCATGCATTGTAGAATCACCGTACAATTACTA
AAGTTTCTTATTGCCAGAAAAGCATTATTGGCCTTTCCCGGGATCATTCC
GCTTTTTTTCGTCTCCTACGTTAGGTCTCTACGTATGATAGCTGTATCCC
GAGGTATTTGATTTTTAAGAAAAAGATTTTTTACTGCGTCAGCATATTTT
ACGATATTCTAGCTTAATCAGCAAAAGCTTAAATCCAAATAATTCATTAT
CTAAGTTGCCATCGAAACCCTGTAAACCATACCATTTCAGTAAGTTTTAA
GGGCAATATTAGCTTGGTTTGAATGTTATATCCTTTTATTCCTCATTAAT
TTAGCATAATTGATTAAACTTCTGATTATAGAACGAGGGTTACTTTCATG
ATGAGTCAACTAGCATACCAAATTCACCCAAAGAGGTAAAAGTATGACTT
ACTTGGGGTTTGATCTTTAGTTTCCACGCATTTTCTTCATCGAAATCCAT
CACCAGCAATAAGGCAATTCTTAAAATGTGGATGTTGAGTCAGTTTCTGG
CTTTTGTTTGGGCTTGATTGTTTCTTTCTCATACATTGATATTGTTTTAT
TTTTAATCGTCTAAAATATAAGATCAGAACTAATCAACAACGGCTATAAT
TTCTATTCTCGAAGCCTTTCAAACCTCTTAATATTCTAGGGCGAAGAGAA
TTCGTACCCACACGACCCTGCACATAACCGTTGGTTGCATGGACGAAGAA
GATGTTCTACAATTTTGGAAGAAAAAGCAAGTCGTGAGGGCAGTTGTATG
GATGAAAATGAAAAGAAATAAAATAGTTTTTCTTTATACTGAAATTTGCA
AAATTTGTGAAGCCTTATTTTCAACATAGAAATATCCTTAAAATCTTCTT
AATCTTTTACCGTAATATATGTCCTAAATTGCATGTTTTGGAGTTATCAA
AGCCTACAAATGTTCTTAAAAAGTTGTTAGCCA

Coding sequence (CDS) from alignment at scaffold_58:110643..112675-

>TCONS_00070897 ID=TCONS_00070897|Name=TCONS_00070897|organism=Clytia hemisphaerica|type=CDS|length=3564bp|location=Sequence derived from alignment at scaffold_58:110643..112675- (Clytia hemisphaerica)
GGCGAAGAGAATTCGTACCCACACGACCCTGCACATAACCGTTGGTTGCA
TGGACGAAGAAGATGTTCTACAATTTTGGAAGAAAAAGCAAGTCGTGAGG
GCAGTTGTATGGATGAAAATGAAAAGAAATAAAACGAGGGTTACTTTCAT
GATGAGTCAACTAGCATACCAAATTCACCCAAAGAGATGGGGTTTGATTT
TGCGATGCAATATTTGATATTCTTCTTCACTTTCCTTGGTAATATGCCTT
CCTCTGCACAACAAAGCTGTTACATGAACTGCAATTGCTCAGGTACAGAG
GTCTCATGTGACGGTGCACCAAAAGACATTCTCAATGGAACCCCTCCCAA
AAGCAACATTACGAGACTGAGTCTGATCAACATGGAGTTAGAAAATGATG
CGTTATTGACCAAATTCCTGGAGAACCTAACACAGCTTCAATATTTGGAT
TTATCATTAAATCAACTGACAGAAATACCGAAGCTGGATAATTTGGCCAC
GTTAAACAATTTAGTTTTACGTCAAAACAAAATCGAAAACTTACCAAAAG
AACTAGCTGATATCGAATTCAAAAATTTAACAATCGACTTGTCAGAAAAT
CCAATAAACTGTAACTGTACAACGGTGTACATAGTAGAAAAGACACAAGA
AATAAAATACAAAGGGATATGTACACAACAAAACATTAAAATAAATGAAC
TGAATCAGACCATGGTTGATTGTGACCCTTGTTCAATAAATAATGGAGGT
TGCTCGTTAATCAAGACTTGCATTGCTGAAAATGCTCTGAATGTAGTATG
TATCTGTAATAATGGTTTTACTGGAGATTTCTGTCAGATATCTCCCACCA
ACCCTGTACCATGCAAAATAAACAATTGTTTAAATGGCGGTGTTTGCTTT
CACGTTGAAAACACAAACTCTACATTCTGCGAGTGTGTTTCCACTGACTA
TAGTGGTGACTTCTGCCAAAACAAAACAAGGAACGAATCCACTAGAAAAA
CCACCTTAAGCTTGAACGCTATTACTGCGATTATTGTCTCCTTATTGGTT
TTATTGTTTGTGATAGTTTTCGGTTATTGGTATTGTGTACATTTGCGTCC
GAAACGTAGAAGAATGCGAGAGAGCCGAAAAAAGAAAGCAAAGAATAGTT
TCGATAGTCAAAACAGCATCGTCAATTACTATCTTCAGGGCGAAGAGAAT
TCGTACCCACACGACCCTGCACATAACCGTTGGTTGCATGGACGAAGAAG
ATGTTCTACAATTTTGGAAGAAAAAGCAAGTCGTGAGGGCAGTTGTATGG
ATGAAAATGAAAAGAAATAAAACGAGGGTTACTTTCATGATGAGTCAACT
AGCATACCAAATTCACCCAAAGAGATGGGGTTTGATTTTGCGATGCAATA
TTTGATATTCTTCTTCACTTTCCTTGGTAATATGCCTTCCTCTGCACAAC
AAAGCTGTTACATGAACTGCAATTGCTCAGGTACAGAGGTCTCATGTGAC
GGTGCACCAAAAGACATTCTCAATGGAACCCCTCCCAAAAGCAACATTAC
GAGACTGAGTCTGATCAACATGGAGTTAGAAAATGATGCGTTATTGACCA
AATTCCTGGAGAACCTAACACAGCTTCAATATTTGGATTTATCATTAAAT
CAACTGACAGAAATACCGAAGCTGGATAATTTGGCCACGTTAAACAATTT
AGTTTTACGTCAAAACAAAATCGAAAACTTACCAAAAGAACTAGCTGATA
TCGAATTCAAAAATTTAACAATCGACTTGTCAGAAAATCCAATAAACTGT
AACTGTACAACGGTGTACATAGTAGAAAAGACACAAGAAATAAAATACAA
AGGGATATGTACACAACAAAACATTAAAATAAATGAACTGAATCAGACCA
TGGTTGATTGTGACCCTTGTTCAATAAATAATGGAGGTTGCTCGTTAATC
AAGACTTGCATTGCTGAAAATGCTCTGAATGTAGTATGTATCTGTAATAA
TGGTTTTACTGGAGATTTCTGTCAGATATCTCCCACCAACCCTGTACCAT
GCAAAATAAACAATTGTTTAAATGGCGGTGTTTGCTTTCACGTTGAAAAC
ACAAACTCTACATTCTGCGAGTGTGTTTCCACTGACTATAGTGGTGACTT
CTGCCAAAACAAAACAAGGAACGAATCCACTAGAAAAACCACCTTAAGCT
TGAACGCTATTACTGCGATTATTGTCTCCTTATTGGTTTTATTGTTTGTG
ATAGTTTTCGGTTATTGGTATTGTGTACATTTGCGTCCGAAACGTAGAAG
AATGCGAGAGAGCCGAAAAAAGAAAGCAAAGAATAGTTTCGATAGTCAAA
ACAGCATCGTCAATTACTATCTTCAGGGCGAAGAGAATTCGTACCCACAC
GACCCTGCACATAACCGTTGGTTGCATGGACGAAGAAGATGTTCTACAAT
TTTGGAAGAAAAAGCAAGTCGTGAGGGCAGTTGTATGGATGAAAATGAAA
AGAAATAAAACGAGGGTTACTTTCATGATGAGTCAACTAGCATACCAAAT
TCACCCAAAGAGATGGGGTTTGATTTTGCGATGCAATATTTGATATTCTT
CTTCACTTTCCTTGGTAATATGCCTTCCTCTGCACAACAAAGCTGTTACA
TGAACTGCAATTGCTCAGGTACAGAGGTCTCATGTGACGGTGCACCAAAA
GACATTCTCAATGGAACCCCTCCCAAAAGCAACATTACGAGACTGAGTCT
GATCAACATGGAGTTAGAAAATGATGCGTTATTGACCAAATTCCTGGAGA
ACCTAACACAGCTTCAATATTTGGATTTATCATTAAATCAACTGACAGAA
ATACCGAAGCTGGATAATTTGGCCACGTTAAACAATTTAGTTTTACGTCA
AAACAAAATCGAAAACTTACCAAAAGAACTAGCTGATATCGAATTCAAAA
ATTTAACAATCGACTTGTCAGAAAATCCAATAAACTGTAACTGTACAACG
GTGTACATAGTAGAAAAGACACAAGAAATAAAATACAAAGGGATATGTAC
ACAACAAAACATTAAAATAAATGAACTGAATCAGACCATGGTTGATTGTG
ACCCTTGTTCAATAAATAATGGAGGTTGCTCGTTAATCAAGACTTGCATT
GCTGAAAATGCTCTGAATGTAGTATGTATCTGTAATAATGGTTTTACTGG
AGATTTCTGTCAGATATCTCCCACCAACCCTGTACCATGCAAAATAAACA
ATTGTTTAAATGGCGGTGTTTGCTTTCACGTTGAAAACACAAACTCTACA
TTCTGCGAGTGTGTTTCCACTGACTATAGTGGTGACTTCTGCCAAAACAA
AACAAGGAACGAATCCACTAGAAAAACCACCTTAAGCTTGAACGCTATTA
CTGCGATTATTGTCTCCTTATTGGTTTTATTGTTTGTGATAGTTTTCGGT
TATTGGTATTGTGTACATTTGCGTCCGAAACGTAGAAGAATGCGAGAGAG
CCGAAAAAAGAAAGCAAAGAATAGTTTCGATAGTCAAAACAGCATCGTCA
ATTACTATCTTCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044086XLOC_044086Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00070897-proteinTCONS_00070897-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00070897-exon-scaffold_58-1575043694:111642..112675TCONS_00070897-exon-scaffold_58-1575043694:111642..112675Clytia hemisphaericaexon
TCONS_00070897-exon-scaffold_58-1575043694:111191..111244TCONS_00070897-exon-scaffold_58-1575043694:111191..111244Clytia hemisphaericaexon
TCONS_00070897-exon-scaffold_58-1575043694:110643..110936TCONS_00070897-exon-scaffold_58-1575043694:110643..110936Clytia hemisphaericaexon
TCONS_00070897-exon-scaffold_58-1510915933:111642..112675TCONS_00070897-exon-scaffold_58-1510915933:111642..112675Clytia hemisphaericaexon
TCONS_00070897-exon-scaffold_58-1510915933:111191..111244TCONS_00070897-exon-scaffold_58-1510915933:111191..111244Clytia hemisphaericaexon
TCONS_00070897-exon-scaffold_58-1510915933:110643..110936TCONS_00070897-exon-scaffold_58-1510915933:110643..110936Clytia hemisphaericaexon
TCONS_00070897-exon-scaffold_58-1491911889:111642..112675TCONS_00070897-exon-scaffold_58-1491911889:111642..112675Clytia hemisphaericaexon
TCONS_00070897-exon-scaffold_58-1491911889:111191..111244TCONS_00070897-exon-scaffold_58-1491911889:111191..111244Clytia hemisphaericaexon
TCONS_00070897-exon-scaffold_58-1491911889:110643..110936TCONS_00070897-exon-scaffold_58-1491911889:110643..110936Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_58supercontigscaffold_58:110643..112675 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0907359	0.0884818	0.102736	0.0670073	0.0407875	0.128923	0.0777702	0.0728075	0.101949	0.18942	0	0.100716	14.0002	9.92267	1.30525	2.48814	0.953612	1.97811	22.4095	23.3827	2.16397	1.71164	1.35247	2.42765	1.88344	3.24592	6.1379	5.62107	0.939958	0.410429
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000742EGF-like_dom
IPR032675L_dom-like
IPR013032EGF-like_CS
IPR001611Leu-rich_rpt
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00070897 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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