TCONS_00070902 (transcript) - C. hemisphaerica

Overview
NameTCONS_00070902
Unique NameTCONS_00070902
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1707

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00070902 ID=TCONS_00070902|Name=TCONS_00070902|organism=Clytia hemisphaerica|type=transcript|length=1707bp
ATGGGGAATCAAAGAGGAGAATGTTAGAAGAGTGAGTAGGGAACCCTAAC
AGCCAGATATTAGGGTTGTTTGAAAGAGAAATCTTGAGAGTTTTCTGTTC
GTGCTGTTTGATTTTTCATGATAAGTGGGTTTCCTTCTTTAGTAAAAGAT
TCAGATTTGATTTAAACcgaacttttttttgttcaagaGTGGTGAAAGTT
TGTATGGTATAAATGAAAGGGCTGAAGGCTAAATTTTCTAAGAGCTTCAG
AGTGTTTTGTTGAATTTTATCggtcttttggaaaaaaaaacactcatCCC
AATTCTTATGACTTGGGTTTCATTTCTATTACATTGATGATCTTAACTTG
GAAGGAAAAATTTATACACATCACACACGATCATTATTTTACTAGCAAAG
AAAACTTCATTCAGAAATTTGCTGACGGTGTTAAAAATTTAATCgaTATA
AAGAAGAATAAGAATGTCTGAATCATACGATACAGGCCCCCCACCAGCAG
CGGCCCAATCATCTGATGGAGGGATCAGGCTGAATCCTGGTTTCATTAGG
ACACCACCTGGTCTCTTACTGCTGATCAATCTAgtgttattatttttgtc
aTGGTGCATAATGGCAGGCTGGAGAGGAGAAGTACATTGGACTgtggaaa
atgattttgaaggAGGAAGTGGATTTTATTTGGCTACAACACTTATTCCA
TGGTTTATCCTTCTCGTAGTTTTTGTTCTCATGTTGTTCAATATCCACAC
GAAAATTCCAATCAATTTTCCCATAACGCTAATGCTTAACTGCGTTATAT
GGGCAGTATTACTGTTTATTGCTTCGTGTATTGTTGGAGCGAAAGCTGAT
AAATGGAATGGTCATAGTTCCTTGTGTGAAGTTTATGCTTGTAATCATCT
CGGAGCTGCTTGTGCTTTTGGAATTTTCTCGGTGGTTGGATTAGGAGTTC
AAGCATTTTTACACTTCCGAGAATGGAGAAGTCCTTGAGCATGAAAATCC
AACACTAAAAATCAATCACCAGATTTTATGACAATACTATGAGTTCATAT
TTTTTTTGAGAACAAAATTTGAATGagaagaaataaaaagaagatgGTGT
TTGAAATTTAAAGACATTTTGTAATCAGTAACACAAAAATCTTTAGAAAT
GATTCAAATGGACACATTAGTCGTAGATTTTGTAAATTTAGGGCACATTT
TATTTAGGAAAtctttttgttgtatttatGCAGTCGTTGTGTTCGTTCGA
AAATTCACTTCAATCAATTAATATTGTATATTTAACAAATTATTGTTAGG
GAAATTGTAAACATGCAAGACAAGGCTAATCTTTCGTATTGACGAAAAAT
TTATCTCTTTAATTGCCAGCTATTTTTCAAGGGCccaattcttaaatttt
cagtaCCAGCGCAGGACGGGATGAAAGCTGTAATATTTTGAACACCCTTG
TCCCAGATAAAGTAGTATTTAGTcacttaaaaaatgaaaaaattttcaca
cttttttttcGCAAACATTATGTGCCAGCACGAATTTATAACCAGATTTA
CCCTTAGCGTTACATTTACTTAACTTCATCGACATCACATTTGAAATTGG
GCTACTATTTCTGAGTGTTTTCTAAGTTGGTCCCCTCAAACCGGAGAATT
GGGAAGGGTAATTTTTGACGTTTATAAAAGTGCTTGAAATGGCATTTTCA
ATTTAag
Run BLAST on NCBI

transcript from alignment at scaffold_58:122691..126871-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00070902 ID=TCONS_00070902|Name=TCONS_00070902|organism=Clytia hemisphaerica|type=transcript|length=4181bp|location=Sequence derived from alignment at scaffold_58:122691..126871- (Clytia hemisphaerica)
ATGGGGAATCAAAGAGGAGAATGTTAGAAGAGTGAGTAGGGAACCCTAAC
AGCCAGATATTAGGGTTGTTTGAAAGAGAAATCTTGAGAGTTTTCTGTTC
GTGCTGTTTGATTTTTCATGATAAGTGGGTTTCCTTCTTTAGTAAAAGAT
TCAGATTTGATTTAAACCGAACTTTTTTTTGTTCAAGAGTGGTGAAAGTT
TGTATGGTATAAATGAAAGGGCTGAAGGCTAAATTTTCTAAGAGCTTCAG
AGTGTTTTGTTGAATTTTATCGGTCTTTTGGAAAAAAAAACACTCATCCC
AATTCTTATGACTTGGGTTTCATTTCTATTACATTGATGATCTTAACTTG
GAAGGAAAAATTTATACACATCACACACGATCATTATTTTACTAGCAAAG
AAAACTTCATTCAGAAATTTGCTGACGGTGTTAAAAATTTAATCGTAAGG
TTTTGTATAAAAAATATCTAGAATAAGTTCATTATAGCTTTTGAAATTCC
CTTTCATTCATATAATCATACGAGTTTTTTAGAGTTTTTTTATATAGTAA
AAAAATATTTTTCGAATAGATACCTTACGATATTGCCCTGGTACTGCTTA
ATAGTAAATTTGAAAATTATTAGAATTAACAACAATTTCAAAACGTTTCA
AAAGAATTATGTGTAATTTGATCTGGTGTTTCCAATTTTTTTTTAGGATA
TAAAGAAGAATAAGAATGTCTGAATCATACGATACAGGCCCCCCACCAGC
AGCGGCCCAATCATCTGATGGAGGGATCAGGCTGAATCCTGGTTTCATTA
GGACACCACCTGGTCTCTTACTGCTGATCAATCTAGTAAGTCAACATTTT
TGGCTGGAACTGATAATCAACGTTTTTTGAAACCCAACAGAAATTTTGAG
CTTTAATGGCAATCAATAGAATTTGAAATTCCCACTTATTTAAAACACTC
TTTTTATTCTATTTTCATTGGTACTTAGCCCCTTCAAGTGTTCTCTATAA
ATGGTCCCGAGTCACTGAGACCATAGTCCGTATAAAAAACCCTGGTCTGG
AAGCCTTTTGTTTCTTTCCATTGTTTCTTACTTGAACTTGTGTCGAGAAA
TTAGTTTGTTTTGCTCACTTTTTAAACATGTGATAAATCTTAAACCAATC
ACAAGAGGAGTACTTGGTAACGTGATCAAAAACTGAGCAAATCGATTTTT
ATCTTTGATNAAAAATGTGATTAAATCTTAAACCAATCCCAAGTAAGTAA
GAGTAGTACTTGGTAACGTGATCAAAAACTGAGCAAATCGATTTTTATCT
TTGATATTAACAAAGGGAAAAGCTAACAAAAAGTTAAAACAATAAGCTTT
CAGACCATAGTGTTTTTTTATAAGGACTATGCTGAGACAGGGATAAGGAA
TATTCAGGTTCTGTAAGCCCGTTTCTGGTGCTGATAATTTTAAAGTTTCC
CTGATCGCACAAACTCTTTCCTATGCCCTTAGTTTGCTTTTTTATGACTG
CGATAGCGAAGAGAGATTGTATCATACACTTATCATACGTAAAATCAAAA
TAGTGGTGCAAGTGGCTCTTAGTACGAGATATCGTAAAATATGCTTACTC
AGCAAAATTTATTGATTTGAAAACCCAAATATCACATGATCTCGGGATCA
GAACACAGTTAGCGTTTTAAAAACAATCCCTTTATCTTTTTTTTTAAATA
CTGTTTGCAGGTTATTAGTCGTAAAAGTTCTAGATGGTTTGCACAAAAAT
TGATTTATATAATGATAAAATTTTAATAAACGGGGGGTCCTAGTTAGAGA
GATCAGGAAATTTGAAAAATAGAGAATTCTTATAAGTTCCTGAGGAGAAG
GGACTAAAAAGAATTACAAAATTTCAATTAATAACCCTTATGTCCATTAT
TACTTAAGTTAAATTCATTTTCCCCAGGTGTTATTATTTTTGTCATGGTG
CATAATGGCAGGCTGGAGAGGAGAAGTACATTGGACTGTGGAAAATGATT
TTGAAGGAGGAAGTGGATTTTATTTGGCTACAACACTTATTCCATGGTTT
ATCCTTCTCGTAGTTTTTGTTCTCATGTTGTTCAATATCCACACGAAAAT
TCCAATCAATTTTCCCATAACGGTGAGGTTCAGTTCATTTTTGCTTAGCA
GACAAAGAGACAGAGAGAGAAAGCGTAGAGGCATCCGGCTACAATCAACA
TCGAGAATTTTGCCTATTTCCTCGTTTTTCGAAATTTTAAGTTCGTGCGA
GAAAGTTGCTTTTGGGCTATCTGTTAAATACAATCAAATATTTCCATTTG
GAAGGAGTTTATAGACTTCCAGGTTATAATCTGAGCCTTATTGGACCATC
TTTGAACTTTTGGATCCTCAGATCGTTGGATTGTTAAATCTCAGAGTTAA
AACTCAACCCTTCCAACCTTTCTAGAATTTTAAAGACTCGCGGTTTTTTT
ACACAAACAATCTCTAGAGACTCTAATGCTATGATTTTTCGAATCCTTTT
ATTTTCCTCCTTTCTTTAGCTAATGCTTAACTGCGTTATATGGGCAGTAT
TACTGTTTATTGCTTCGTGTATTGTTGGAGCGAAAGCTGATAAATGGAAT
GGTCATAGTTCCTTGTGTGAAGTTTATGCTTGTAATCATCTCGGAGCTGC
TTGTGTAAGTCTGAACTGGATTTTAAATTTCATTACATCCACTAAATCAA
TTCCCAGGGGGTGGGGTACTTACAGTAAGCAAATGTAGGGTACGATATGT
GTCGCCTAAGGGTGCCTTTTTTAGAAGTCACAACCCTAGTAATCCCCTCC
CCCCCCGGGGGCATCCATCTATTTTAGACTCTAAGGGATCTTAGCTGTCC
ATTTTCTAACTATCTTTTATGTGGGGATTTTTCAATTGTTTAGCTCAAAG
TATAGTAGAAAGTTATATTGTCTTTCCCAATGCAATTCTAGGTAGAACGC
AATGAAATAGTGACATTTCTCTTTTTCACCGGGGCTGACCTATCTAACAA
TACAAATTCTATTTTAAATATTTCTGAAATTTTCTCAGGTTTATGATGTT
TAGACCACAATATCAAAATATCCCTGAAACAGGCTGGTTGGGCTCATAGA
TTTATAAAACTCAAAGGGCTAATTGTCAGGCTTTAAGCCATCGCAGGCAA
AAAAAAGTTAATATCGGCAAAAATATTGTTGCTATTGTTTTCGAAAACCC
ACGAAAGCTTCTTATTGGTCAAGCGCTGAAATTCTATTGTAATGTCACGC
GACTTAGGTAGAATTTCCTACCTAACCACGGGACACTTTCAGCAAAAGTA
CGCCATCTAGTCCTTCGGGCATTATAAATCTATGGTTGGGCTTTTTGAGC
AAACATGTTAAATTATGAATAACTTTTTCTTTTACAGGCTTTTGGAATTT
TCTCGGTGGTTGGATTAGGAGTTCAAGCATTTTTACACTTCCGAGAATGG
AGAAGTCCTTGAGCATGAAAATCCAACACTAAAAATCAATCACCAGATTT
TATGACAATACTATGAGTTCATATTTTTTTTGAGAACAAAATTTGAATGA
GAAGAAATAAAAAGAAGATGGTGTTTGAAATTTAAAGACATTTTGTAATC
AGTAACACAAAAATCTTTAGAAATGATTCAAATGGACACATTAGTCGTAG
ATTTTGTAAATTTAGGGCACATTTTATTTAGGAAATCTTTTTGTTGTATT
TATGCAGTCGTTGTGTTCGTTCGAAAATTCACTTCAATCAATTAATATTG
TATATTTAACAAATTATTGTTAGGGAAATTGTAAACATGCAAGACAAGGC
TAATCTTTCGTATTGACGAAAAATTTATCTCTTTAATTGCCAGCTATTTT
TCAAGGGCCCAATTCTTAAATTTTCAGTACCAGCGCAGGACGGGATGAAA
GCTGTAATATTTTGAACACCCTTGTCCCAGATAAAGTAGTATTTAGTCAC
TTAAAAAATGAAAAAATTTTCACACTTTTTTTTCGCAAACATTATGTGCC
AGCACGAATTTATAACCAGATTTACCCTTAGCGTTACATTTACTTAACTT
CATCGACATCACATTTGAAATTGGGCTACTATTTCTGAGTGTTTTCTAAG
TTGGTCCCCTCAAACCGGAGAATTGGGAAGGGTAATTTTTGACGTTTATA
AAAGTGCTTGAAATGGCATTTTCAATTTAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044087XLOC_044087Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00070902-exon-scaffold_58-1575043694:126428..126871TCONS_00070902-exon-scaffold_58-1575043694:126428..126871Clytia hemisphaericaexon
TCONS_00070902-exon-scaffold_58-1575043694:126037..126175TCONS_00070902-exon-scaffold_58-1575043694:126037..126175Clytia hemisphaericaexon
TCONS_00070902-exon-scaffold_58-1575043694:124750..124944TCONS_00070902-exon-scaffold_58-1575043694:124750..124944Clytia hemisphaericaexon
TCONS_00070902-exon-scaffold_58-1575043694:124218..124352TCONS_00070902-exon-scaffold_58-1575043694:124218..124352Clytia hemisphaericaexon
TCONS_00070902-exon-scaffold_58-1575043694:122691..123484TCONS_00070902-exon-scaffold_58-1575043694:122691..123484Clytia hemisphaericaexon
TCONS_00070902-exon-scaffold_58-1510915933:126428..126871TCONS_00070902-exon-scaffold_58-1510915933:126428..126871Clytia hemisphaericaexon
TCONS_00070902-exon-scaffold_58-1510915933:126037..126175TCONS_00070902-exon-scaffold_58-1510915933:126037..126175Clytia hemisphaericaexon
TCONS_00070902-exon-scaffold_58-1510915933:124750..124944TCONS_00070902-exon-scaffold_58-1510915933:124750..124944Clytia hemisphaericaexon
TCONS_00070902-exon-scaffold_58-1510915933:124218..124352TCONS_00070902-exon-scaffold_58-1510915933:124218..124352Clytia hemisphaericaexon
TCONS_00070902-exon-scaffold_58-1510915933:122691..123484TCONS_00070902-exon-scaffold_58-1510915933:122691..123484Clytia hemisphaericaexon
TCONS_00070902-exon-scaffold_58-1491911889:126428..126871TCONS_00070902-exon-scaffold_58-1491911889:126428..126871Clytia hemisphaericaexon
TCONS_00070902-exon-scaffold_58-1491911889:126037..126175TCONS_00070902-exon-scaffold_58-1491911889:126037..126175Clytia hemisphaericaexon
TCONS_00070902-exon-scaffold_58-1491911889:124750..124944TCONS_00070902-exon-scaffold_58-1491911889:124750..124944Clytia hemisphaericaexon
TCONS_00070902-exon-scaffold_58-1491911889:124218..124352TCONS_00070902-exon-scaffold_58-1491911889:124218..124352Clytia hemisphaericaexon
TCONS_00070902-exon-scaffold_58-1491911889:122691..123484TCONS_00070902-exon-scaffold_58-1491911889:122691..123484Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_58supercontigscaffold_58:122691..126871 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.0263614	0.0401388	0.0276275	0	0.0773783	0.365781	0.449989	0.309455	0.198287	0	0	0.0536244	0	0.0296399	0.0159663	0.0931368	0.224938	0.254795	0.207765	0.152455	0.422633	0.061455	0	0	0	0.0425507	0.0902416	0.028187	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00070902 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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