TCONS_00070914 (transcript) - C. hemisphaerica

Overview
NameTCONS_00070914
Unique NameTCONS_00070914
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1458

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00070914 ID=TCONS_00070914|Name=TCONS_00070914|organism=Clytia hemisphaerica|type=transcript|length=1458bp
aaaaaaactaaagaaaaagtcACAGTATATAATATGCAACGATACAAAAT
ATTCCTTATACTTATACTATTTAACTGGATTGGGTTATCATCATGCCAAG
AAATCAATCAACAACCAATCGCTGATCGAATAGCATACCACGtgaccaaa
aatcaaaatttcatgcagcagttgaaatattttaaagaatttcaattcgA
TTTTTCACAAATTGAATCCACTTGTATACAATATCCAAAATTGAATTGTT
TGACTGAACTTGTGAAGATATCTCGAGGACCAAATGTTGGAAAATACTTG
GACGCATTGGGAAAGCCACCAACTGGTCTGTTTGAAGGGAACGTCAATTG
GATTGGTAATTATGAGGAGTGCATGTCTATTCCCAATACGCATTATTGTG
ACATGAAAAATGTGGCAGTCAACCTAATGAATAGAGTTACACCTCTATCA
ACGTATGGAGTTTGTGTCCCCAAAGAATGTGATATTTATGACGTAACGAA
ACTTTTGAATTCAACGGTCAATTGCGTGAACCAATATTTGAATAAGTCTA
TAAATATCATCCAGGTGAAGCCAGCAAGTCAGCCAGTTGCTCCAAGTGCT
TTTGCACCAGTACCCTTGTACTCCAAATGTTTTAACGATCAAACATATTC
AAAATATTCTGGCAGAACCTATGCAATGATTGTGATTTCAATCATCATTT
TGACATTGTGTATTTTGGGTACAATTGCTGAGCTTGGTTTACAATTGGTT
GCTAGTATAAAAGCTACAGGTTTTGAATATACGAATGAAATTTCTACATA
CAATAAAACTGAATCAACAACATTCAATAGTGAAAATGATGAAGCAAACA
TGAAAAAGTTCCGGGAGATGCCTGAAGCAAAACcGAACAAGTTGTTGAGT
TTCTTGTTATGTTTTTCATTGGTGAAAAATTCGAAATCGATTTTCAACAC
AAATGTTCCACCAGGAGCAATCGCTTCCATCAATGGCATTCGAACTTTCT
CCATCACGTGGGTCATTCTGGGTCATTTGATTGGTAATGGAATGTCAGGA
GACAACCCTTTGCCATTTTTCACGTGGTTGAAACGATTTTCATTCATGGC
CATTTCCAACGCTTTCGTCTCCGTCGATTCTTTCTTCGTATTGAGTGGAT
TATTGGTTGGATATTTGAGTTTCAAACGATTTGAAACACACGGCAAATTA
CCTTTACTGAGATATTACTTGCATCGTTATATCAGGCTTACACCGTCATA
CCTGTATTTGATCTTTTTCGTGGTCTATTTATATCCTTTGTTGGGAAACG
GTGTTCGGTGGATCGGAACTCCAGAAAAGAATTGTCATAACATGTGGTGG
ACAAACATCCTTTACATCAATAATATCTACCCGGATCAAGGAGAAGGGTG
TTACGGAGTGAGTTGGTATTTGGCAAATGACATGCAATTCTACATCATTT
CACCTTTG
Run BLAST on NCBI

transcript from alignment at scaffold_58:169464..175791-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00070914 ID=TCONS_00070914|Name=TCONS_00070914|organism=Clytia hemisphaerica|type=transcript|length=6328bp|location=Sequence derived from alignment at scaffold_58:169464..175791- (Clytia hemisphaerica)
AAAAAAACTAAAGAAAAAGTCACAGTATATAATATGCAACGATACAAAAT
ATTCCTTATACTTATACTATTTAACTGGATTGGGTTATCATCATGCCAAG
AAATCAATCAACAACCAATCGCTGATCGAATAGCATACCACGTGACCAAA
AATCAAAATTTCATGCAGCAGTTGAAATATTTTAAAGAATTTCAATTCGA
TTTTTCACAAATTGAATCCACTTGTATACAATATCCAAAATTGAATTGTT
TGACTGAACTTGTGAAGATATCTCGAGGACCAAATGTTGGAAAATGTAAG
ATTTAATTGATACTTTATATACTGATTCTACTCTATCCACCTTACTTACT
AAGGCGCCATTCCTCATTTTTCCAAATCCGTTTATTAGCTCCTTACTACG
CTCAAACTTGAATTATAACAGAACTGCACATAAGGCAAAAATAGATTCTT
CGAAATGTGTGGATACCGCCTGGAATACAGCAAAATTTTCAGAAAAGCCC
TTTTCATACCTCAAAGTGAGCCAGTGTTTTACCCTCCTGAAATTTTAGAA
TAACTTTTAACCCTGAAAAATGAAAAAATATTCTTGGAAATTCTTCTCGG
TTTACCCTCTGGAAATGTTCGTTCATCCCCCTGATATAAAATGGAATAGC
CCATTGACCCAGTGTTTCTTTGTATTCTCTTTCATGCACCAGACTTGGAC
GCATTGGGAAAACCACCAACTGGTCTGTTTGATNAGTGTTTCTTTGTATT
CTCTTCTTTCATGCACCAGACTTGGACGCATTGGGAAAGCCACCAACTGG
TCTGTTTGAAGGGAACGTCAATTGGATTGGTAATTATGAGGAGTGCATGT
CTATTCCCAATACGCATTATTGTGACATGAAAAATGTGGCAGTCAACCTA
ATGAATAGAGTTACAGTAAGTTTTAATAAGCAATGTTNCCAAAAAGTGCC
TAACATGGGTTTTTTTGGACTCACGCTAAAATATTTATTCACTCCAGTAT
CTACGACTATCCCAGCTGGCAAACAACGTTCTTTTAACGTTTATCTAACG
TTCACAACGTCCATATAACGTTAGATGAACGTTAAAACAACGTTGTGTGC
CAGCTGGGTAAACATCTTCCGTCTCTGACGATTTCTTTATGATCCATATG
AGCCCATATAGGGCTCTTGCTCTTTAGGTTCAAATTACCCAAGTTTCTTC
TTCATTATGAGGGTCATATTTTAAAGGCCTAATTTGGTGTTTCACGTGGA
GTCGTTGTTAAAGTCTATTTTAAATTAGCTGGCAGTGTTTTTTCAAACCC
CAATAACTTTTGATAGAATTTGAATTAAGTAGCGATTTTGTGCTCGTTGA
AAAGACAAACAGGAGTGGGATATTGTTACAAAGAAAAACTCAAAAAATCG
GAAAATAAAGATTGAAAAGGAAGAAAAAGAAGACAGAAGATTGGACACTA
GCTGTGTCTCAGTTCGTGGCAATTTCATTGATTCGTAGAATTCAGGTACT
GTATGGTGAACATTGAGCACGTCGCTCCCCTCGTCTACTACGAACTAGTG
TAATAGCAACGAACCGATTGGAGAGCAATCGCCCGGCAAGCGAGAGGTCG
TGGTTTCAATCCCCATTCGATTCGTTACCTTTGAGAAAACTGGGAAGTGC
ATTAGTGCAGGAACTGTTGATTCATTACCCATAAGTAATACGCACTTGAT
TTCACACAGAAGAAAAAGAAGGAAATCAACTACTTTGAAATAGACTTTAA
ATCGCATATCTAACTCACTTTTTTTAACACGATGCTTTCACTTACAATAT
CTTTTCTGTACTGCAGCCTCTATCAACGTATGGAGTTTGTGTCCCCAAAG
AATGTGATATTTATGACGTAACGAAACTTTTGAATTCAACGGTCAATTGC
GTGAACCAATATTTGAATAGTAAGTGATGGATTGAACTTTCTCCAGACTA
CAGTTTAATTGGAAATTTTTTATTCCACACAAGTAAGCAACCACCCGTAT
TTTCAATTATTGACCGCTTTTGCTTGTCTTTATCTGATAATGTAAATTTT
CTTTGAACGCGCTAAAAGGGGGGGTTGTACTTTTACGGTGTGACGGGATT
TGCCCCTTTTTAGTACGGTATTACAGGACTTGACGAAAAAAATACGGGAA
AACGGTATTTTAAAATCAGACGGTATTTCGAACCCCTACAAACACCCCCC
CCTAAAACACTGAAGATCACGAGGCAACCTTTATAATTTGAAAAGTTTTG
ATAACAGAGTTGAGCCTTTCGGTCCTCCATGCAAAGAAATTAGCAGAAAG
AGAAATAGATTCTGTTCCTCAGAGTAGCCCTTGTTTATTGGTTTGTTCCG
TTGGCTACAAAGGCAAATTTCAAACCCCCGACATATGGAAAAGCTCCGAG
TGTGTTTATTTTTGTACAATTCGATTCTTCTCAGATAGGCTTTCGTTTAT
ATGTGCTATTAGTTTTTCTAAAAAACGCTTTTTATTCGAAATTTATAATT
TTTTTTTTCGTCACAGAGTCTATAAATATCATCCAGGTGAAGCCAGCAAG
TCAGCCAGTTGCTCCAAGTGCTTTTGCACCAGTACCCTTGTACTCCAAAT
GTTTTAACGATCAAACATATTCAAAATATTCTGGCAGAACCTATGCAATG
ATGTAAGTAATAGAAATTATTTCTCTATTTTGGGTATATCCAAAACTTCA
AAAACTTCATAACATTAAATGAGATAAACTTTTCTTCACTGAAAAGATAA
TATCTTGCTACTATGCCCTCCGATGCCTCGGTATTGGTTCTTTCCACGAG
GGAGCAGGGATCACTGCGCTGCCAAGAATACACGTGTCATAGTTCGGACC
GCCCCCCTTTCTTAAGGGGGGGGATGACACCATCCAAAAAAGTGAAGAAG
GGGGGATCAGAAATTTTCATTAAAAAGGGGGGGGATGGCAAGGAGGGGGG
GATGGCAAGGAGGGGGGATCGTTTAAGAAAGGGGGGCTTACAAATATTGT
AGATTATTTTTCAGCACTGTTATGAAATTTGGTCTGCATGAAAGGAAGTT
CTTTATTTTCACTAAAAAGTGGTATTATATTTGCCAGACTTAATTTTTCT
TTGTAACTGTTTCCCTTCCCTTTTTACCATAGAAAATTTAGCCCAAAACC
CTTGGGGGATAGACATTTTTTAAGGTTGGGGGATGCCAAGAAGGGGGGGG
ATCATTTAAGAAGGGGGGGGTCATTTAAGAAGGGGGGGGTCAGACCCTTT
TCCGTACTATGCGGGTTGCAAAATTAAAGAAGAAGAAGACAAATCACGCT
TTTACTCGTAATTTTTATGTGCTTGTTACATGACATTTATTTCTGATTGG
TTCGAACTTATTGACACTAATAAAGTTATCAGCTGTAATTTGTACACCAA
GTAACATGGTTAAAAACACGTGAACTTCTTCGAGTAATCACATGTTTTGA
AATCGTAGTGTCATGGTGATTTCAGCGTCGCTTTGGCTTGGAACTAAAAT
TCCCGGTCAGAAGCCGACATGTGTGTAGTTTACAGACCAGAACAGGTTTC
AAGGCGTAATTGAAGTTTCTTTCCTCTAAAGTAAACCATGTTACATACCA
TTGGTAATAAGAAATAAAGTAAATTTTGTTCTGCTATTTTTTCTAGTGTG
ATTTCAATCATCATTTTGACATTGTGTATTTTGGGTACAATTGCTGAGCT
TGGTTTACAATTGGTTGCTAGTATAAAAGCTACAGGTTTTGAATATACGA
ATGAAATTTCTACATACAATAAAACTGAATCAACAACATTCAATAGTGAA
AATGATGAAGCAAACATGAAAAAGTTCCGGGAGATGCCTGAAGCAAAACG
TAACGAGCTTTGTTTTTATCTTTCGTAATTTTCTCAATGATAAATTGCTT
CGTCTTACATCCGTTCCATAGACCAATTTGTACCCGCCCCCAACTTGAAA
TTTGGCCAATATTCCATCCTCTTTGGGAAAAATACATTATCATTTCCACC
CCATTGGAAAATTGACTTTGTTTTCATCCCTATTTTAATTCAATGGAAAA
ATTGCATCCCCACTGGATTTTTTGACTTGACAGTGGAATTTCTATCCCCA
TTGGGAATTTGATTTAAAACTTTCATTCACCATGTGGGATATATAAAATT
CCCACTGGGGCAGTAAGACAGTGGTGTCGTTGCATTAAAGGGATCAGGTT
CTAGTTAAGCAGGGTGAGATAACATCAATTGCCTAAGGTTACAATATAGA
CTACATTAATGTCGTTTGATTCTTGGTGAAATCGAAACGAGTCCCCATTG
TGGCAAGTATCTTCAATTCGAAAGCATCTTTTTCTTTGTTGAGCTTTATT
TGAAGTTTGTAAAACTGTCTTTCTTTTTTCTTTTCCAGCGAACAAGTTGT
TGAGTTTCTTGTTATGTTTTTCATTGGTGAAAAATTCGAAATCGATTTTC
AACACAAATGTTCCACCAGGAGCAATCGCTTCCATCAATGGCATTCGAAC
TTTCTCCATCACGTGGGTCATTCTGGGTCATTTGATTGGTAATGGAATGT
CAGGAGGTATATTATAATAGCTATTATTTTCTTAGGTTTTATATTTTTTG
ATTTCATTTTGAGCCTCACAATTCATGATAAAGATCCCTGTTCAAGCTTC
AAAATATTCAAAATCTGAAAGTCCCAGTGGAAAGAACATAAGCTCTGATC
AAAATTGAAGTATAGAACAGAACGTGAAAAAAGTGCTTAATCCAAGTCAC
CATAATATTTGTTACTTGACCACAATTGTTCTTTATGATTAGTTCCAAGT
CGCATTGACCCAACTGTGTCTTCTCTTTTATTTCTTAGACAACCCTTTGC
CATTTTTCACGTGGTTGAAACGATTTTCATTCATGGCCATTTCCAACGCT
TTCGTCTCCGTCGATTCTTTCTTCGTATTGAGGTAAGACATGTTCGTCTC
TTATGATTACCATTAAATTTTGACTTGGCCTCGGGTAGCTTTATTTTTTG
AGAATATCAGACAGAGATATCTATGATTAAATGAAGGGAAGCTGCCTTAT
AAACAGATTAGAGGACAGCAGAAAAAAATACTCTGAAATAATGACATATT
AGCATTCATATCCCCCCCCCTATTTTCAGATTGCTCTTACCACTGATTAA
ATTCCAACTTTCTGTGTGAATATTCATGTTTTTTTCCAGTGGATTATTGG
TTGGATATTTGAGTTTCAAACGATTTGAAACACACGGCAAATTACCTTTA
CTGAGATATTACTTGCATCGTTATATCAGGTAAGGTGGATTATTTTCTAC
ATAATGATAGGATTAAAAGGGGAAACACTTTAGTATCTGTATCAGCAGTT
CTTCTCCAGCAGAATACCCGACCAGTTCTCGAGTTGTTTTCTTATTCAAT
AATTTTTATTGTTAACCGGTTACGGCTTTTTGCGCAATGCAATTGGTTCT
TTTCGCATGACGACGGGCCTACATTGTCCAGAGTTGCCCGTCGTTAGGAA
AATTCATCGTGAAGTCACTTTCTCAAAGGAAAATGAACAATGCACTAACC
GGTCATTATTGTATTAGTAAGAGAGCCACGTTTTAAATTGTAAATAATAT
TCAGCCCAATTTGTTTTATTCTAGGTTTTTATTTTAGGTTACTCATCATA
ATCTTCCAGTTTACATCTAAATTATGCGCTTATCGTTTTTGAAAATTATG
GTTCTTATCCCCCATAGGCTTACACCGTCATTGTTAGCCATAAAATTCGA
ACCAGTTGCCGCACAATAAAGAGTTTGGTATCGTTAAAAAGATATTGAAA
ATCGTTCCTAAATTTCTAAATTATGTCTTATCTCTTATAGGCTTACACCG
TCATACCTGTATTTGATCTTTTTCGTGGTCTATTTATATCCTTTGTTGGG
AAACGGTGTTCGGTGGATCGGAACTCCAGAAAAGAATTGTCATAACATGT
GGTGGACAAACATCCTTTACATCAATAATATCTACCCGGATCAAGGAGAA
GGGGTAGGAATTGAATCCTTTTTTCATGAAATTGCGTAGGAATAGAAAAT
CATGCTACTTAAAGTATGATAGCTCCAGATTTACATTTGTCCTTCTTCTT
TCAACGCTAAAAACAATGCAATGACTTCTTCTCTGAGATGACAAAAATCG
CAACACCGATTTGGCGCGATGTTGGATTCGCGACATTTTTAGTTCTCTCA
GAACCCCATTTCAAATGATCAGCCTTCTTTGGAAACACAATATTAAGTAG
TATTTTATTTTATCACAGTGTTACGGAGTGAGTTGGTATTTGGCAAATGA
CATGCAATTCTACATCATTTCACCTTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044090XLOC_044090Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00070914-exon-scaffold_58-1575043694:175497..175791TCONS_00070914-exon-scaffold_58-1575043694:175497..175791Clytia hemisphaericaexon
TCONS_00070914-exon-scaffold_58-1575043694:174877..175022TCONS_00070914-exon-scaffold_58-1575043694:174877..175022Clytia hemisphaericaexon
TCONS_00070914-exon-scaffold_58-1575043694:173873..173975TCONS_00070914-exon-scaffold_58-1575043694:173873..173975Clytia hemisphaericaexon
TCONS_00070914-exon-scaffold_58-1575043694:173140..173275TCONS_00070914-exon-scaffold_58-1575043694:173140..173275Clytia hemisphaericaexon
TCONS_00070914-exon-scaffold_58-1575043694:171943..172145TCONS_00070914-exon-scaffold_58-1575043694:171943..172145Clytia hemisphaericaexon
TCONS_00070914-exon-scaffold_58-1575043694:171236..171403TCONS_00070914-exon-scaffold_58-1575043694:171236..171403Clytia hemisphaericaexon
TCONS_00070914-exon-scaffold_58-1575043694:170860..170953TCONS_00070914-exon-scaffold_58-1575043694:170860..170953Clytia hemisphaericaexon
TCONS_00070914-exon-scaffold_58-1575043694:170513..170602TCONS_00070914-exon-scaffold_58-1575043694:170513..170602Clytia hemisphaericaexon
TCONS_00070914-exon-scaffold_58-1575043694:169789..169951TCONS_00070914-exon-scaffold_58-1575043694:169789..169951Clytia hemisphaericaexon
TCONS_00070914-exon-scaffold_58-1575043694:169464..169523TCONS_00070914-exon-scaffold_58-1575043694:169464..169523Clytia hemisphaericaexon
TCONS_00070914-exon-scaffold_58-1510915933:175497..175791TCONS_00070914-exon-scaffold_58-1510915933:175497..175791Clytia hemisphaericaexon
TCONS_00070914-exon-scaffold_58-1510915933:174877..175022TCONS_00070914-exon-scaffold_58-1510915933:174877..175022Clytia hemisphaericaexon
TCONS_00070914-exon-scaffold_58-1510915933:173873..173975TCONS_00070914-exon-scaffold_58-1510915933:173873..173975Clytia hemisphaericaexon
TCONS_00070914-exon-scaffold_58-1510915933:173140..173275TCONS_00070914-exon-scaffold_58-1510915933:173140..173275Clytia hemisphaericaexon
TCONS_00070914-exon-scaffold_58-1510915933:171943..172145TCONS_00070914-exon-scaffold_58-1510915933:171943..172145Clytia hemisphaericaexon
TCONS_00070914-exon-scaffold_58-1510915933:171236..171403TCONS_00070914-exon-scaffold_58-1510915933:171236..171403Clytia hemisphaericaexon
TCONS_00070914-exon-scaffold_58-1510915933:170860..170953TCONS_00070914-exon-scaffold_58-1510915933:170860..170953Clytia hemisphaericaexon
TCONS_00070914-exon-scaffold_58-1510915933:170513..170602TCONS_00070914-exon-scaffold_58-1510915933:170513..170602Clytia hemisphaericaexon
TCONS_00070914-exon-scaffold_58-1510915933:169789..169951TCONS_00070914-exon-scaffold_58-1510915933:169789..169951Clytia hemisphaericaexon
TCONS_00070914-exon-scaffold_58-1510915933:169464..169523TCONS_00070914-exon-scaffold_58-1510915933:169464..169523Clytia hemisphaericaexon
TCONS_00070914-exon-scaffold_58-1491911889:175497..175791TCONS_00070914-exon-scaffold_58-1491911889:175497..175791Clytia hemisphaericaexon
TCONS_00070914-exon-scaffold_58-1491911889:174877..175022TCONS_00070914-exon-scaffold_58-1491911889:174877..175022Clytia hemisphaericaexon
TCONS_00070914-exon-scaffold_58-1491911889:173873..173975TCONS_00070914-exon-scaffold_58-1491911889:173873..173975Clytia hemisphaericaexon
TCONS_00070914-exon-scaffold_58-1491911889:173140..173275TCONS_00070914-exon-scaffold_58-1491911889:173140..173275Clytia hemisphaericaexon
TCONS_00070914-exon-scaffold_58-1491911889:171943..172145TCONS_00070914-exon-scaffold_58-1491911889:171943..172145Clytia hemisphaericaexon
TCONS_00070914-exon-scaffold_58-1491911889:171236..171403TCONS_00070914-exon-scaffold_58-1491911889:171236..171403Clytia hemisphaericaexon
TCONS_00070914-exon-scaffold_58-1491911889:170860..170953TCONS_00070914-exon-scaffold_58-1491911889:170860..170953Clytia hemisphaericaexon
TCONS_00070914-exon-scaffold_58-1491911889:170513..170602TCONS_00070914-exon-scaffold_58-1491911889:170513..170602Clytia hemisphaericaexon
TCONS_00070914-exon-scaffold_58-1491911889:169789..169951TCONS_00070914-exon-scaffold_58-1491911889:169789..169951Clytia hemisphaericaexon
TCONS_00070914-exon-scaffold_58-1491911889:169464..169523TCONS_00070914-exon-scaffold_58-1491911889:169464..169523Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_58supercontigscaffold_58:169464..175791 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.92257	2.40789	2.54514	1.76846	1.16832	1.0394	1.88101	2.36315	3.2169	2.06074	8.2788	5.06468	25.1902	24.048	16.162	17.8949	7.91998	9.92731	11.9602	11.0575	6.44484	5.21817	6.25894	7.75459	7.08492	9.07041	3.27714	4.76466	17.3616	21.9487
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00070914 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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