TCONS_00070920 (transcript) - C. hemisphaerica

Overview
NameTCONS_00070920
Unique NameTCONS_00070920
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length618

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00070920 ID=TCONS_00070920|Name=TCONS_00070920|organism=Clytia hemisphaerica|type=transcript|length=618bp
aaaaaaactaaagaaaaagtcACAGTATATAATATGCAACGATACAAAAT
ATTCCTTATACTTATACTATTTAACTGGATTGGGTTATCATCATGCCAAG
AAATCAATCAACAACCAATCGCTGATCGAATAGCATACCACGtgaccaaa
aatcaaaatttcatgcagcagttgaaatattttaaagaatttcaattcgA
TTTTTCACAAATTGAATCCACTTGTATACAATATCCAAAATTGAATTGTT
TGACTGAACTTGTGAAGATATCTCGAGGACCAAATGTTGGAAAATACTTG
GACGCATTGGGAAAACCACCAACTGGTCTGTTTGATNAGTGTTTCTTTGT
ATTCTCTTCTTTCATGCACCAGACTTGGACGCATTGGGAAAGCCACCAAC
TGGTCTGTTTGAAGGGAACGTCAATTGGATTGGTAATTATGAGGAGTGCA
TGTCTATTCCCAATACGCATTATTGTGACATGAAAAATGTGGCAGTCAAC
CTAATGAATAGAGTTACACCTCTATCAACGTATGGAGTTTGTGTCCCCAA
AGAATGTGATATTTATGACGTAACGAAACTTTTGAATTCAACGGTCAATT
GCGTGAACCAATATTTGA
Run BLAST on NCBI

transcript from alignment at scaffold_58:173876..175791-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00070920 ID=TCONS_00070920|Name=TCONS_00070920|organism=Clytia hemisphaerica|type=transcript|length=1916bp|location=Sequence derived from alignment at scaffold_58:173876..175791- (Clytia hemisphaerica)
AAAAAAACTAAAGAAAAAGTCACAGTATATAATATGCAACGATACAAAAT
ATTCCTTATACTTATACTATTTAACTGGATTGGGTTATCATCATGCCAAG
AAATCAATCAACAACCAATCGCTGATCGAATAGCATACCACGTGACCAAA
AATCAAAATTTCATGCAGCAGTTGAAATATTTTAAAGAATTTCAATTCGA
TTTTTCACAAATTGAATCCACTTGTATACAATATCCAAAATTGAATTGTT
TGACTGAACTTGTGAAGATATCTCGAGGACCAAATGTTGGAAAATGTAAG
ATTTAATTGATACTTTATATACTGATTCTACTCTATCCACCTTACTTACT
AAGGCGCCATTCCTCATTTTTCCAAATCCGTTTATTAGCTCCTTACTACG
CTCAAACTTGAATTATAACAGAACTGCACATAAGGCAAAAATAGATTCTT
CGAAATGTGTGGATACCGCCTGGAATACAGCAAAATTTTCAGAAAAGCCC
TTTTCATACCTCAAAGTGAGCCAGTGTTTTACCCTCCTGAAATTTTAGAA
TAACTTTTAACCCTGAAAAATGAAAAAATATTCTTGGAAATTCTTCTCGG
TTTACCCTCTGGAAATGTTCGTTCATCCCCCTGATATAAAATGGAATAGC
CCATTGACCCAGTGTTTCTTTGTATTCTCTTTCATGCACCAGACTTGGAC
GCATTGGGAAAACCACCAACTGGTCTGTTTGATNAGTGTTTCTTTGTATT
CTCTTCTTTCATGCACCAGACTTGGACGCATTGGGAAAGCCACCAACTGG
TCTGTTTGAAGGGAACGTCAATTGGATTGGTAATTATGAGGAGTGCATGT
CTATTCCCAATACGCATTATTGTGACATGAAAAATGTGGCAGTCAACCTA
ATGAATAGAGTTACAGTAAGTTTTAATAAGCAATGTTNCCAAAAAGTGCC
TAACATGGGTTTTTTTGGACTCACGCTAAAATATTTATTCACTCCAGTAT
CTACGACTATCCCAGCTGGCAAACAACGTTCTTTTAACGTTTATCTAACG
TTCACAACGTCCATATAACGTTAGATGAACGTTAAAACAACGTTGTGTGC
CAGCTGGGTAAACATCTTCCGTCTCTGACGATTTCTTTATGATCCATATG
AGCCCATATAGGGCTCTTGCTCTTTAGGTTCAAATTACCCAAGTTTCTTC
TTCATTATGAGGGTCATATTTTAAAGGCCTAATTTGGTGTTTCACGTGGA
GTCGTTGTTAAAGTCTATTTTAAATTAGCTGGCAGTGTTTTTTCAAACCC
CAATAACTTTTGATAGAATTTGAATTAAGTAGCGATTTTGTGCTCGTTGA
AAAGACAAACAGGAGTGGGATATTGTTACAAAGAAAAACTCAAAAAATCG
GAAAATAAAGATTGAAAAGGAAGAAAAAGAAGACAGAAGATTGGACACTA
GCTGTGTCTCAGTTCGTGGCAATTTCATTGATTCGTAGAATTCAGGTACT
GTATGGTGAACATTGAGCACGTCGCTCCCCTCGTCTACTACGAACTAGTG
TAATAGCAACGAACCGATTGGAGAGCAATCGCCCGGCAAGCGAGAGGTCG
TGGTTTCAATCCCCATTCGATTCGTTACCTTTGAGAAAACTGGGAAGTGC
ATTAGTGCAGGAACTGTTGATTCATTACCCATAAGTAATACGCACTTGAT
TTCACACAGAAGAAAAAGAAGGAAATCAACTACTTTGAAATAGACTTTAA
ATCGCATATCTAACTCACTTTTTTTAACACGATGCTTTCACTTACAATAT
CTTTTCTGTACTGCAGCCTCTATCAACGTATGGAGTTTGTGTCCCCAAAG
AATGTGATATTTATGACGTAACGAAACTTTTGAATTCAACGGTCAATTGC
GTGAACCAATATTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044090XLOC_044090Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00070920-exon-scaffold_58-1575043694:175497..175791TCONS_00070920-exon-scaffold_58-1575043694:175497..175791Clytia hemisphaericaexon
TCONS_00070920-exon-scaffold_58-1575043694:174877..175099TCONS_00070920-exon-scaffold_58-1575043694:174877..175099Clytia hemisphaericaexon
TCONS_00070920-exon-scaffold_58-1575043694:173876..173975TCONS_00070920-exon-scaffold_58-1575043694:173876..173975Clytia hemisphaericaexon
TCONS_00070920-exon-scaffold_58-1510915933:175497..175791TCONS_00070920-exon-scaffold_58-1510915933:175497..175791Clytia hemisphaericaexon
TCONS_00070920-exon-scaffold_58-1510915933:174877..175099TCONS_00070920-exon-scaffold_58-1510915933:174877..175099Clytia hemisphaericaexon
TCONS_00070920-exon-scaffold_58-1510915933:173876..173975TCONS_00070920-exon-scaffold_58-1510915933:173876..173975Clytia hemisphaericaexon
TCONS_00070920-exon-scaffold_58-1491911889:175497..175791TCONS_00070920-exon-scaffold_58-1491911889:175497..175791Clytia hemisphaericaexon
TCONS_00070920-exon-scaffold_58-1491911889:174877..175099TCONS_00070920-exon-scaffold_58-1491911889:174877..175099Clytia hemisphaericaexon
TCONS_00070920-exon-scaffold_58-1491911889:173876..173975TCONS_00070920-exon-scaffold_58-1491911889:173876..173975Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_58supercontigscaffold_58:173876..175791 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.600096	0.663647	0	0.45924	0.395992	0	0.984805	0.445815	0.492031	1.9908	2.40163	1.79064	6.94765	5.16413	8.18668	8.90698	4.71972	7.90889	4.51321	8.67947	1.48785	1.96641	1.24922	3.33195	0	0	0.383631	2.10696	6.45013	5.54706
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00070920 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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