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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00070955 ID=TCONS_00070955|Name=TCONS_00070955|organism=Clytia hemisphaerica|type=transcript|length=133bp
ACTGCATTGAGTGCTGCACATTACTTAAAAGATTTCAACAAGAGATTAAC
AGTGATGAAAGTGCTTGCAACAAAGACGTGTTACGTTTCAGAAATGACGG
ATGCCGAACCATCAATTAAACAAATTGAATTGG Run BLAST on NCBI transcript from alignment at scaffold_58:374103..377456- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00070955 ID=TCONS_00070955|Name=TCONS_00070955|organism=Clytia hemisphaerica|type=transcript|length=3354bp|location=Sequence derived from alignment at scaffold_58:374103..377456- (Clytia hemisphaerica)
ACTGCATTGAGTGCTGCACATTACTTAAAAGATTTCAACAAGGTTTGGTG
ATAGGTTGAAGAATTGAAGTTCGATTGGAACATTGTTTAAATATTTTTTT
ACGTGAAAAACGCATAAAAATTTAAGCGCATACAGTTGACTCTCTAATTC
GATCTTCGAGGTGAAAAATTTACATTCGAGTTAGAGAACGATTCGACTTA
CAAAGAGTAATTTAAACTACTTTCTAGCTGAGTATTTTATTTCTAATTAG
AGAGAGTTGACTGTATTAACATTTCTGGCTCTACCTTAAGATATTAACTA
GCTAGATGCTGAATGGACCCACCTGATGATGAAAGTTGGATAGCAATGCG
AGGAGAAAAAAATCAGTCAAAAAATATAGCGTTTAGCGAAAATGCATTGA
TTGTTGATAGGGGGAGAGGGAAGGGTTGTAGGGGAAAAATAGCCGTATTG
TATAAGGGTTGCGAAGCGATCCAGACTCCACCTCAATTCGCAAGTTGCCA
GCAAAAAATAATAAGAGCCACTCTGATAAAACCCTACTAAAAGAGACAGG
GTCTTAATAAGCCTTATAATACCCCTTATAATACCCCAAACACACCATAA
AAAACCACGGCAGCACAACACCCGCCGCCCCGCGAAACGCTCTTTCTTTT
CTTATCTTAGTTCTTCTAATGTAAATGGTGCCTTAAAAAATCGAACGATA
TTCGTCGACGAACGTTCGGACATTTTTTTATTCGAATCGTCTGTCGAAAT
CATCAAAAGTAAACAAAAGCAAAAATCTACAAAAGATGGCTTGTTGTTGG
TTCTTGGCCTGTTTTGATTTGTTTTCTTGACAAATTCGACAAATTTGATT
ACCTCCGTACCTCTTTATCATTGAATACCCACTTGGTTTTGCAAGGTAAG
TTTAGTTCACTTAAAAGAGCACCCCTCCCGCCCGCGCGACCTGCAAAAAC
TTCTCATTTATTGACCTTAATAGTTACTTTTAAAAGTCAAGGAATGATGA
AGATCCTTTCTGTCACCTTTCAAACTAATTTTTTTTCCATTTAACAGCAA
AATAAACATTTAAAACCGAAGANNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NTTGAGCAAAAAATCAGAAAAAACTAATGATAAAATCTCGAGAAAATGCC
AAAAAAACAGTTTTTCCGGCATATTTCCGGCATTTTCGGTCGGAAAAAAA
TGTTTTTTTGAAAATTGGGCTCCGTCACTTTTAAGGTATTGTCATTTTAC
ATCAGTGTGCAAAATTTCATAAAAAAATATAAAGTACAGCTCGAGAAATT
CAAGAAATACTGTTTTTCCGGCGAAAATCAGCTGTTCCGGCGATTGCTAA
TACGCATCTTTGTGCAAAAAATCTGACAAAACTAATGAGCCAATCTCGAG
AAAAGCTGGTAACAGACGGACGGACGAACGGACAGACGAACGGAGGAACG
GACATCGGTTAATTTATAGGACCTCCAAGGTAGGTCCAAAAAATAAAAGA
TAATTTTCCGCTCAACAATTTGCAGTCAAAGTACAACTTTTCCCAGCATG
ATTTACATTCTAACAGATTGCAGACCAGAAAATTTAGTTGTTAAGAGCCA
AAAAGAGTAACCTCTCGCATATGAAAGTAACTCAAAAACCACGGTAGTTT
GTCGGCGAAAGACCTATTCAATTTTTTTTTTTTTTTTTTTTAATATATTA
TGATAATTATTTTAACTAAACACAAACGAAAATAGATATATACAATTAAA
TTTTCCTGAGTCGTTACCCAAACTGTTTTTTTTCTATTTATAATTTTATC
TTACTATACTAATCGTCGCACTCTACCTCTTGATCCACGAATGCATCTCA
CTGTCGATCTTAAAAGTGAGAAGCATATAACAGTTCTTATGTTACTCGTG
ACTTTTGAGAGTGTATCATGTCTCTTATCCGAAATCATTTCTGCGAGACG
TTTGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNTTCTTCTTTTCTTTCTCATTAGACAAT
AAACAGTTCTCAATTTTTGTTTTGCTGTACCTTCGAGCGAACGGGTTGAA
AACCCTCACGTCAAAAAATGCTCTTTAGCCAGCAGTCCCAAAACTGAGAG
CGCTTATGTCCAGTCTTGCTTCGCGTGACACATTTGCCTGCCTCGGCAGG
TCTTCATTATTGAGTTCATTGAGAATGGGCTCTGTTCTTACGTTATGACA
AACTTCCTCCAGAAGTTTAGACGTAATGTCTCTAACATCATTGTGCCTCA
ATGACACAAATCCACCTTTCTTGCACGAGAGCGCGTGTGCTAGGTCAAAC
GAGGACCCGCACGCGCAAATTGATGGCATTCGATCAAGTGGCCAGTTGTA
ACGGATTCTGATGGCGTCCCAAAATTCTTGCTTCGTTAGCTCAAATCCTC
GTTCGTTCGTTTGGGTGACCGACAACCAAATTGATACACCTTTTTGGATT
AGCGTCTCCATCATCCGTTTGGTTTCGTCATCGGATTCGTCCAGGAAAGC
TCGTAGCTTCACCTGATTTCGTTGTTGACGTTCGTTGTGCAGACGAGACT
TGCTTTTCGAGTCTGGTGCATCTGCTTCTGATTGCAGTATCAGGTTTTGT
AGTACAACCTATTCAATGCGTATCCGATTCTGATTTCATTTTATCGTCTG
TATCCCCATACAGAGATTAACAGTGATGAAAGTGCTTGCAACAAAGACGT
GTTACGTTTCAGAAATGACGGATGCCGAACCATCAATTAAACAAATTGAA
TTGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00070955-exon-scaffold_58-1575043694:377415..377456 | TCONS_00070955-exon-scaffold_58-1575043694:377415..377456 | Clytia hemisphaerica | exon |
| TCONS_00070955-exon-scaffold_58-1575043694:374103..374193 | TCONS_00070955-exon-scaffold_58-1575043694:374103..374193 | Clytia hemisphaerica | exon |
| TCONS_00070955-exon-scaffold_58-1510915933:377415..377456 | TCONS_00070955-exon-scaffold_58-1510915933:377415..377456 | Clytia hemisphaerica | exon |
| TCONS_00070955-exon-scaffold_58-1510915933:374103..374193 | TCONS_00070955-exon-scaffold_58-1510915933:374103..374193 | Clytia hemisphaerica | exon |
| TCONS_00070955-exon-scaffold_58-1491911889:377415..377456 | TCONS_00070955-exon-scaffold_58-1491911889:377415..377456 | Clytia hemisphaerica | exon |
| TCONS_00070955-exon-scaffold_58-1491911889:374103..374193 | TCONS_00070955-exon-scaffold_58-1491911889:374103..374193 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_58 | supercontig | scaffold_58:374103..377456 - |
Blast
The following BLAST results are available for this feature:
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