TCONS_00070966 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00070966
Unique Name	TCONS_00070966
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	256

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at scaffold_58:556276..562294-

transcript sequence

>TCONS_00070966 ID=TCONS_00070966|Name=TCONS_00070966|organism=Clytia hemisphaerica|type=transcript|length=256bp
ATAGTTTTTACTTAACAAGAAACACAGAGGAAGAAGAAGCAAGCAAGTTG
GTGACTTAACTCAGAGTAAATAATTTTGCTGCTTGGGAGTATCAATTCAA
AATGATGAGAGGGTTTTTATTGATCCTGCTCCTTATGACTTTGCAGCAGA
TATCCATCTTTGGAACAACTTTTGCCGCTCCATCCACAACTGTTGCCGCT
CCAGTGACAACCgccgctccagtaacaacggccgctccagtaacaacggc
cGCTCC

Run BLAST on NCBI

transcript from alignment at scaffold_58:556276..562294-

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00070966 ID=TCONS_00070966|Name=TCONS_00070966|organism=Clytia hemisphaerica|type=transcript|length=6019bp|location=Sequence derived from alignment at scaffold_58:556276..562294- (Clytia hemisphaerica)
ATAGTTTTTACTTAACAAGAAACACAGAGGAAGAAGAAGCAAGCAAGTTG
GTGACTTAACTCAGAGTAAATAATTTTGCTGCTTGGGAGTATCAATTCAA
AATGATGAGAGGGTTTTTATTGATCCTGCTCCTTATGACTTTGCAGCAGA
TATCCATCTTTGGTAAGTAAGTTAGCCGACAAACCTGGCGATGAAAACCC
GTTTGTTGAATCCGACTTGGCTTCAGCAACGGGTTTGGTCGCCAGGGATG
ACCTAGCACAATAATCTGTGCTCCTATTTTGATTGGCTTAAAAATTTCGA
GAAAGTCTTTCTGCTACTGCCTGCAATATATTCAAAGAGGGTAACTTATT
TATGGCACACCCGGTAGAAATTATTTTACGCGTAATGACTTCACGTCAAA
AGAAAACGAAAGTCTATAAAACTTCATGGAGATTGCTAAAAATGCGACTA
GAAATTCCATTTTATGAGCGTGGAAAAGACTTACTTTATGGCAATGTTTT
ATTTTACAATTGACACCATACTAGCCCAGAAAAAAGTACATCCTATCCTA
GACTAAGTCTATTTCTATTTATCTACACTAGTGAATTCTTATACTTGTTA
ATTAGCGAAAGTATAACGATAGGATTTCGCGGTGGTGGTCGGTGCGGAAA
AAACCCGAAGAGGTCACTCGATTCCGAAAAGACGGTATGTGCCGCGCAAA
ATCTGCTTTTTTAAATCGTGCCCTTACAGTGCAGTTCAATATGGCTGAAA
AAGTACCCTTTCAATGCATTTTCTCTTGATTTACCAAAACCTTATAGTGC
ACTATACTTCTCAGCTGTAAATCTGCGTGAAAGAAGAAGCTTGGGAAATT
TTATGTTTCAAAGAAAAACTGAGAAAATTATTCTTGTCAGCTGTAGTTAT
CAAACAATAAAAACTTTTTCAAACAAACGAGAAGTAAAAGCCTTTCTTTT
TAAAAATTATTTTGAAATTGTTTTAAAATTTGACTCTTGCAGTGCAATCT
CACAAAAACACACCCTTGATCGGGTGAAACAAGGCATGTCCCAAAAATAT
TTTGCGTGACGCACACCGCTTCCCATTATTCATTAACTTTCATATACAGC
TCAAAAGAATCGTATCATTATCAACGAGAGTATTCCGAAAAGTGCTGGGT
CAAAAATTTACATCAAGCCAATCTCAAGATATCGGCCAAAAACTGATTTT
GACGTTATAAAATACATCGAAAAAACACGTCAAAAAGACAATTTAAATGA
CGTCATTATTGAAAAAAGGCGATAATTCCGATTAACTTACTACAATCAAA
GCTAAATTTTGACTGGAGATGTAAATTAACGTTTCTAAAAATTTCATGAA
TAAAAAAAATCTGAAAATTCATGATGACGTCAGCAATTTTTGACGTATTT
TAATTTTTCCTGACAACAAATGACGTCATTCAAATTTTCTGAAAATTTTT
GAACAAATATTTCAGAATCATTAATTTACAACTCAAGTCAAAATTTGGTG
TTGATTGCATTAATAAAATTTAGGTTATCGCTGTTTTTGAATAATGACGT
CATTTGAATCTTACTTATGACGTGTTTTTTCGATGTTTTTTATAACGTCA
AAATCAATTTTTGACCGATATCTGGAGATTGGCTTAATGCAAATTTTTGA
CCCAGCACTTTTCGAAATCCTCTCGTTGATATGATTCTTTTGAGCTATAT
ATGAACGTTAAGGAATCATTGGAAGCGGTGGGCGTCACGCAAAATATATT
TGGGACATGCCTTGTTTCACCCGAGTGCCTTACAGTGCATTTTGGGAGGC
TGACAAACCCCACCATTAAGCGCGGCACACGATGTAGGCCAGATCATATG
AGCGCCCCCCCCCCGGGGGGAAACTTAGAAAACGAAGGTAGTTGGAAACT
TCTAGAACATTCTTGAAGATTGTGAAGTATGGACTCACTCGCTAAGATAA
AATTTAATGATTCCAGCCCACAAGTGCTAGCTAGGCGTAACCAAGTATTC
GTAAACATTGCTTGTCTATTTTAATAACATATTTCAGCATGCTGTCAGAC
TTGCTTTGGTTGTTTGTATTTTTTTCATGTTTTTGGTGTTTTAAGAGTAT
TAAAGAGGTTTATATTTCTTTTAGCATATACTATTTTATGGTTGTGTAGT
TAGTAAATTAGTCTGCTAAAGCGCATGCCACGCGTGCCCAGCGTGCTATG
CGTGCCAGCGTGCCATGGGTGCAAGCGTACCCTCGTGCTTTGGCGTGCCG
AAGTGCCAAAAAAGTTATGCTTTTGCTTTCACTTTAGCTTCTCTCAAACA
ACCCTAGCACCTTCGCAAGCATCATTTGAAAACTGCCCTGGCTTTTTGCC
CCCGCAACGAGCGCAGCGAGTGAGGAGGCCTTCATAGCTTCACGCAAGGA
TATTGGACAGGAATCTCGAATTTTTGCGCGCGCGCGTTTGTTCGTANNNN
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GATCTTCCAAGTTTTCTCTTGATAGAATTTTCCACTCCATTATGCCTAAA
CAATTGCAGATTTTTTGAGCAGATTTCAGTGAAAGAAATTAACTATAAAT
TACATGCCATTGTAAGGAGTTGCGGTTTCCATTTTGCGTGTGCAATTTTT
ACTGAAAACAAATGGGTTTATATTGATGATTTAAATCCTGACAAAATGTT
GTATCAAAATATAAATGAATTGTTCGCAGAAAATACAGGAGGATGGTTCT
TTGCTTTTTACAAAAAACTTAATTCAGAAGAAATTGATTTTGCAATTGAT
ACTGATATTCTTCAATCAGCTAAAACTAATGACAAAAAAGCTGACGCTTC
AACGAAAGTCAGTGAGAATATTGAGACCAAAAAAGAATTTATTGTTATTA
TTTTCAGGAAAAAAGAAAATCTTTTATTTCTTCGTTTAACCAAACGTGTA
GTTACTTACTATCTTTTTGTCCCCATGCATTTCTTATAATCTTGCAATTG
ACATTGTTATGATTATACAATTTATTATAGAATTCTTTAAATATTATATT
GCTGCGGTGGCATGTTAGTGTAAGCTATGTACTAGTTTTATAAATATTCT
AGCCATGGATGTAGTAAGTAACTTTGATTTAATTTTTTTACTCAATCGTT
AAAAGAGATTATTTAAACCAGACAAAACAAGCAGGATAAAGGGTTATGTT
TTTTTAAAGTTTACGGTTTTTATGGTTTATGACTCAGGCAGACATAATCA
TATGTTCTATTCTCTTCAACATTAGGAACAACTTTTGCCGCTCCATCCAC
AACTGTTGCCGCTCCAGTGACAACCGCCGCTCCAGTAACAACGGCCGCTC
CAGTAACAACGGCCGCTCC

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_044106	XLOC_044106	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00070966-exon-scaffold_58-1575043694:562133..562294	TCONS_00070966-exon-scaffold_58-1575043694:562133..562294	Clytia hemisphaerica	exon
TCONS_00070966-exon-scaffold_58-1575043694:556276..556369	TCONS_00070966-exon-scaffold_58-1575043694:556276..556369	Clytia hemisphaerica	exon
TCONS_00070966-exon-scaffold_58-1510915933:562133..562294	TCONS_00070966-exon-scaffold_58-1510915933:562133..562294	Clytia hemisphaerica	exon
TCONS_00070966-exon-scaffold_58-1510915933:556276..556369	TCONS_00070966-exon-scaffold_58-1510915933:556276..556369	Clytia hemisphaerica	exon
TCONS_00070966-exon-scaffold_58-1491911889:562133..562294	TCONS_00070966-exon-scaffold_58-1491911889:562133..562294	Clytia hemisphaerica	exon
TCONS_00070966-exon-scaffold_58-1491911889:556276..556369	TCONS_00070966-exon-scaffold_58-1491911889:556276..556369	Clytia hemisphaerica	exon

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_58	supercontig	scaffold_58:556276..562294 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.39588	3.403	1.58049	1.54626	7.52968	5.2063	6.28118	2.52016	1.17628	2.91403	2.82842	2.32412	64.7428	74.6495	1.58525	3.82774	3.14364	0.537022	147.08	224.738	0.674808	0	0	2.18261	2.99739	6.68774	0	1.02135	0	0

Blast

The following BLAST results are available for this feature:

BLAST of TCONS_00070966 vs. Swiss-Prot (Human)

BLAST of TCONS_00070966 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0


Match Name	E-value	Identity	Description

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TCONS_00070966 (transcript) - C. hemisphaerica