|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00070967 ID=TCONS_00070967|Name=TCONS_00070967|organism=Clytia hemisphaerica|type=transcript|length=1510bp
aaagaaatgaaaaagatgcatctttcctttttcttttttccttgatgaaa
aaatctttggctttttcagattttatttttttacgcTAATAACAGAAAAA
GGACAGAAATGATTGGATTTCTCTTTTTTGCTTTGGATCCTGACCGACCT
TTTTCCTTCGACAGAAATTTCTTTGCTGACGTCGCTTTGAAAGCATATAG
ATGCTAGGAANTCTTTAagacaaaagaaagaaatgaaaaagatgcatctt
tcctttttcttttttccttgatgaaaaaatctttggctttttcagatttt
gtttttttacgcTAATAACAGAAAAAGGACAGAAATGATTGGATTTCTCT
TTTTTGCTTTGGATCCTGACCGACCTTTTGCCTTCGACGGAAATTTCTTT
GCTGACGTCGCTTTGAAAGCATATAGATGCTAGGAATGACAAAGGCTGAC
ACAGAATCAAACTTCTGTAAACGTTACAATGAATAGCAAAATATGCCTAG
cTAACGGTGACAGCAGTAGAGATGAATTTTGCGAGTGTGAGAATTGTTTT
CGTGCGAATGGAGGAACTTTCGTGTATGGGTCAGATGACATCATTCAACA
AAtcgaaaatcaaaatcgaaacaGTGGTGGGGATGAAAGgcctcaaaaag
aaaaatggacaGAATCAGATATAAGAGAGTTAATCTCTCTTTGGGGTTCA
AAGGATATTCTCGTGAACCCAAAACACGCGTCCTATTATAATACGCGCGA
GCGGACGAAAGCAATTGAGGAGATTAAAAATGATTTGAGTGAACGAGGCA
TTTTATTCACTGTTAAACAAGTCAACGATAAAATGATTAACTTGCGAACA
TACTACGGTAGCCAGAGACGTCAGATAGAAGCTTCCAAACGTAACGCAGC
AGGACCGGAAGATATCTTTGTTAGTCGTTGGAAATTCTTTGATAGTTTGA
GATTTTTATCAGATACCATCATCTCCAGATCGACTCTTGATCTTTCGAGG
GTGGATTCCGGGAGTGAAAATGGCTCCACACTATCACCTACGGGCGTTGA
ATTATCGTCAGCCAAAACACCCTatcaaagaaaacgaaaatgtttgaatt
CTTTGAGTGACTATAAAGAAAGTACGCCAAATCCTTTTATGAGTGAACAC
ACACATCATCAAAATATTAGTCCAGAATGTGTCCGAGATTCAGAAAGTGT
CCGCGAAAAAGCTGAAAACAGTCATAAATCACAAGATGAAGTTTTTGGAG
AATTGATAACATCTATGATGAGGGATATCCCAGAAAGTCACGAAAAGGCT
TTaatgaaacttgaaattcaacACAAGATAATCACAATGCAATACAAAAT
TACGTCACCTTcatccaaaaagttttgtaaataGTCTGCTGACTCTGCAC
TTTTCCTTTCTAGGGTTATCTTTGTGTTACAAGTGTTTTACTGATTTTGT
ACATATGTTATATAAACGTCTAAAGAGAAAATATACATTAATGTCACTAA
TACTAAATAA Run BLAST on NCBI protein sequence of TCONS_00070967-protein >TCONS_00070967-protein ID=TCONS_00070967-protein|Name=TCONS_00070967-protein|organism=Clytia hemisphaerica|type=polypeptide|length=301bp
MNSKICLANGDSSRDEFCECENCFRANGGTFVYGSDDIIQQIENQNRNSG
GDERPQKEKWTESDIRELISLWGSKDILVNPKHASYYNTRERTKAIEEIK
NDLSERGILFTVKQVNDKMINLRTYYGSQRRQIEASKRNAAGPEDIFVSR
WKFFDSLRFLSDTIISRSTLDLSRVDSGSENGSTLSPTGVELSSAKTPYQ
RKRKCLNSLSDYKESTPNPFMSEHTHHQNISPECVRDSESVREKAENSHK
SQDEVFGELITSMMRDIPESHEKALMKLEIQHKIITMQYKITSPSSKKFC
K Run BLAST on NCBI transcript from alignment at scaffold_58:566996..570219- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00070967 ID=TCONS_00070967|Name=TCONS_00070967|organism=Clytia hemisphaerica|type=transcript|length=3224bp|location=Sequence derived from alignment at scaffold_58:566996..570219- (Clytia hemisphaerica)
AAAGAAATGAAAAAGATGCATCTTTCCTTTTTCTTTTTTCCTTGATGAAA
AAATCTTTGGCTTTTTCAGATTTTATTTTTTTACGCTAATAACAGAAAAA
GGACAGAAATGATTGGATTTCTCTTTTTTGCTTTGGATCCTGACCGACCT
TTTTCCTTCGACAGAAATTTCTTTGCTGACGTCGCTTTGAAAGCATATAG
ATGCTAGGAANTCTTTAAGACAAAAGAAAGAAATGAAAAAGATGCATCTT
TCCTTTTTCTTTTTTCCTTGATGAAAAAATCTTTGGCTTTTTCAGATTTT
GTTTTTTTACGCTAATAACAGAAAAAGGACAGAAATGATTGGATTTCTCT
TTTTTGCTTTGGATCCTGACCGACCTTTTGCCTTCGACGGAAATTTCTTT
GCTGACGTCGCTTTGAAAGCATATAGATGCTAGGAATGACAAAGGCTGAC
ACAGAATCAAACTTCTGTAAACGTTACAATGAATAGCAAAATATGCCTAG
GTAATTAAATATTTATTCATTATTCTTCCTGTTTCGTGTGGAGATCCCCG
GGGATGCACTTTAAAACTTGCCCCGGTTTAGAAGCAAGTTATAGGGATTT
GCGATAATCGAAAATTGACTCCCTAAAAGAATTAAAATTCTTGAACTTTC
GACCACAATTGGATAATTTCGGGAAGATATTCTCCTAAAGGTAGACTGGA
GTCGTTTATAATGCGTGTAATACTAATAATACCAATACTACTAATAATAA
TACGGGATTTAGTTAGTATAAACGACTGGAAGAATCCGGTGTTCCAGCCT
TATAGATACAGGGGCTAGCTACGCAGAAACTTCCGTAGCGAGAAAACAAT
TTATCAATCAACAACAAACTCTCAAAACGAAATCAACTCAAATGAAAAAC
TTTCAATACACAAATCCATACATATTTTTTTTCTCAAGAATTATTTTGAG
CAGGAAAAAATTCTAATTGCAATATTGACACTTTTTCTTTTGTTTGGAGT
TAGTGCACAAAGGTTTCTAGACGACAAAAATTGTTCCATTCATTACTTTT
TGCTTTATTTCTACTTTTGCTAGACTATCCTAAAGGTAGTAAAAACGTCA
AAAATTAAAAACTTTAAATTCAGTTACTCTAGGGTGGGTTTCCAACAATT
GGCTCAGGCACACCCGTTAACTCGCAAACCTAGTTGAAATCCCCCCTCTC
CACCCCGGCTAGAGATCACAACTTTAATCCAGGATGGTACCGGGTCAAAA
GGCGTGTAGCCGGAATACTAAAGGAAAAGAGTACGTTCGAAAATCTCTAG
AGAAACAGAAGCGGTACAGATATAAAAATGAATACAATTTTCACGTCAAA
ACTTTTTGCAGAAAAAGTACGAACAGGGATGAAAGAAGTGGCCGTGTTTT
GAGTCGTTTACTTTTTGCACAAGTCGTTACTCGAGCAAGCATCAGAGTAG
GAGAACATCGAAGAATTCAGAAGAATTCAACTTTACCTAAGTGTTTCCAC
ATACTACAGTGAAATAAAATCCACGTGAAAAGGACCTAGATCTTTACATG
TTGGCTTTGAGGACAAGAAGTGAAGCATTACTTCAACTTTAAGCTAAAGC
ACATGCTTATTAGTAGAGGGCATTTTGTAAAATCGCTCGACTGTTTTGTT
AGAAGCACTTGTTATACATTTTTGGAAAGCTAAGAGGTAGGGGAATCGAA
ATTACTATGTTTCCAATTTGAGCTTGAAAAAGCGCAAAAACTGGACAAAA
TAGCTGTTTCTGGCTGAAAAACACGGTTTTCAAGGGTTAATATCTCGAGT
TAGGTACAGAAATCACCTATACTTGCAATATATCTCTAATCTTATTTTTT
TGAGAGCTTTCCAAAAATATACAACAAGTCTCCGTTTTCTCGAGCTAAAA
TTTTCATTAATTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNGAGCTAAAATTTTCATTAATTTTTGACCCTATAATTTT
TGCCTGAGACCGTCATATTTGTCCGAAAATCACACCAAAGTGTCCGAAAA
AAATTGGAAACATATTAATTTCAATTCCCCTACCCCTTATAGCTTTCCAA
AAATGTATAACAAGTGCTTCTAACAAAACAGTCAAGCGATTCCAAAAAAT
CGAACAAAATTCCCCCTACTATATCCAGTATCTAACTTTTCTATTGTTTT
TAATTTTTTTGCAGCTAACGGTGACAGCAGTAGAGATGAATTTTGCGAGT
GTGAGAATTGTTTTCGTGCGAATGGAGGAACTTTCGTGTATGGGTCAGAT
GACATCATTCAACAAATCGAAAATCAAAATCGAAACAGTGGTGGGGATGA
AAGGCCTCAAAAAGAAAAATGGACAGAATCAGATATAAGAGAGTTAATCT
CTCTTTGGGGTTCAAAGGATATTCTCGTGAACCCAAAACACGCGTCCTAT
TATAATACGCGCGAGCGGACGAAAGCAATTGAGGAGATTAAAAATGATTT
GAGTGAACGAGGCATTTTATTCACTGTTAAACAAGTCAACGATAAAATGA
TTAACTTGCGAACATACTACGGTAGCCAGAGACGTCAGATAGAAGCTTCC
AAACGTAACGCAGCAGGACCGGAAGATATCTTTGTTAGTCGTTGGAAATT
CTTTGATAGTTTGAGATTTTTATCAGATACCATCATCTCCAGATCGACTC
TTGATCTTTCGAGGGTGGATTCCGGGAGTGAAAATGGCTCCACACTATCA
CCTACGGGCGTTGAATTATCGTCAGCCAAAACACCCTATCAAAGAAAACG
AAAATGTTTGAATTCTTTGAGTGACTATAAAGAAAGTACGCCAAATCCTT
TTATGAGTGAACACACACATCATCAAAATATTAGTCCAGAATGTGTCCGA
GATTCAGAAAGTGTCCGCGAAAAAGCTGAAAACAGTCATAAATCACAAGA
TGAAGTTTTTGGAGAATTGATAACATCTATGATGAGGGATATCCCAGAAA
GTCACGAAAAGGCTTTAATGAAACTTGAAATTCAACACAAGATAATCACA
ATGCAATACAAAATTACGTCACCTTCATCCAAAAAGTTTTGTAAATAGTC
TGCTGACTCTGCACTTTTCCTTTCTAGGGTTATCTTTGTGTTACAAGTGT
TTTACTGATTTTGTACATATGTTATATAAACGTCTAAAGAGAAAATATAC
ATTAATGTCACTAATACTAAATAA Coding sequence (CDS) from alignment at scaffold_58:566996..570219- >TCONS_00070967 ID=TCONS_00070967|Name=TCONS_00070967|organism=Clytia hemisphaerica|type=CDS|length=1812bp|location=Sequence derived from alignment at scaffold_58:566996..570219- (Clytia hemisphaerica)
CTAACGGTGACAGCAGTAGAGATGAATTTTGCGAGTGTGAGAATTGTTTT
CGTGCGAATGGAGGAACTTTCGTGTATGGGTCAGATGACATCATTCAACA
AATCGAAAATCAAAATCGAAACAGTGGTGGGGATGAAAGGCCTCAAAAAG
AAAAATGGACAGAATCAGATATAAGAGAGTTAATCTCTCTTTGGGGTTCA
AAGGATATTCTCGTGAACCCAAAACACGCGTCCTATTATAATACGCGCGA
GCGGACGAAAGCAATTGAGGAGATTAAAAATGATTTGAGTGAACGAGGCA
TTTTATTCACTGTTAAACAAGTCAACGATAAAATGATTAACTTGCGAACA
TACTACGGTAGCCAGAGACGTCAGATAGAAGCTTCCAAACGTAACGCAGC
AGGACCGGAAGATATCTTTGTTAGTCGTTGGAAATTCTTTGATAGTTTGA
GATTTTTATCAGATACCATCATCTCCAGATCGACTCTTGATCTTTCGAGG
GTGGATTCCGGGAGTGAAAATGGCTCCACACTATCACCTACGGGCGTTGA
ATTATCGTCAGCCAAAACACCCTATCAAAGAAAACGAAAATGTTTGAATT
CTTTGAGTGACTATAAAGAAAGTACGCCAAATCCTTTTATGAGTGAACAC
ACACATCATCAAAATATTAGTCCAGAATGTGTCCGAGATTCAGAAAGTGT
CCGCGAAAAAGCTGAAAACAGTCATAAATCACAAGATGAAGTTTTTGGAG
AATTGATAACATCTATGATGAGGGATATCCCAGAAAGTCACGAAAAGGCT
TTAATGAAACTTGAAATTCAACACAAGATAATCACAATGCAATACAAAAT
TACGTCACCTTCATCCAAAAAGTTTTGTAAATAGATGAATAGCAAAATAT
GCCTAGCTAACGGTGACAGCAGTAGAGATGAATTTTGCGAGTGTGAGAAT
TGTTTTCGTGCGAATGGAGGAACTTTCGTGTATGGGTCAGATGACATCAT
TCAACAAATCGAAAATCAAAATCGAAACAGTGGTGGGGATGAAAGGCCTC
AAAAAGAAAAATGGACAGAATCAGATATAAGAGAGTTAATCTCTCTTTGG
GGTTCAAAGGATATTCTCGTGAACCCAAAACACGCGTCCTATTATAATAC
GCGCGAGCGGACGAAAGCAATTGAGGAGATTAAAAATGATTTGAGTGAAC
GAGGCATTTTATTCACTGTTAAACAAGTCAACGATAAAATGATTAACTTG
CGAACATACTACGGTAGCCAGAGACGTCAGATAGAAGCTTCCAAACGTAA
CGCAGCAGGACCGGAAGATATCTTTGTTAGTCGTTGGAAATTCTTTGATA
GTTTGAGATTTTTATCAGATACCATCATCTCCAGATCGACTCTTGATCTT
TCGAGGGTGGATTCCGGGAGTGAAAATGGCTCCACACTATCACCTACGGG
CGTTGAATTATCGTCAGCCAAAACACCCTATCAAAGAAAACGAAAATGTT
TGAATTCTTTGAGTGACTATAAAGAAAGTACGCCAAATCCTTTTATGAGT
GAACACACACATCATCAAAATATTAGTCCAGAATGTGTCCGAGATTCAGA
AAGTGTCCGCGAAAAAGCTGAAAACAGTCATAAATCACAAGATGAAGTTT
TTGGAGAATTGATAACATCTATGATGAGGGATATCCCAGAAAGTCACGAA
AAGGCTTTAATGAAACTTGAAATTCAACACAAGATAATCACAATGCAATA
CAAAATTACGTCACCTTCATCCAAAAAGTTTTGTAAATAGATGAATAGCA
AAATATGCCTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00070967-exon-scaffold_58-1575043694:569720..570219 | TCONS_00070967-exon-scaffold_58-1575043694:569720..570219 | Clytia hemisphaerica | exon |
| TCONS_00070967-exon-scaffold_58-1575043694:566996..568005 | TCONS_00070967-exon-scaffold_58-1575043694:566996..568005 | Clytia hemisphaerica | exon |
| TCONS_00070967-exon-scaffold_58-1510915933:569720..570219 | TCONS_00070967-exon-scaffold_58-1510915933:569720..570219 | Clytia hemisphaerica | exon |
| TCONS_00070967-exon-scaffold_58-1510915933:566996..568005 | TCONS_00070967-exon-scaffold_58-1510915933:566996..568005 | Clytia hemisphaerica | exon |
| TCONS_00070967-exon-scaffold_58-1491911889:569720..570219 | TCONS_00070967-exon-scaffold_58-1491911889:569720..570219 | Clytia hemisphaerica | exon |
| TCONS_00070967-exon-scaffold_58-1491911889:566996..568005 | TCONS_00070967-exon-scaffold_58-1491911889:566996..568005 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_58 | supercontig | scaffold_58:566996..570219 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR006578 | MADF-dom |
Blast
The following BLAST results are available for this feature:
|
