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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00070974 ID=TCONS_00070974|Name=TCONS_00070974|organism=Clytia hemisphaerica|type=transcript|length=1768bp
GTGTATATTTGCTGACGGTTCATTtaaagagtttgaatttctaaCTTCCT
aattagaaaaatgaaagtcAAATTTAAAACTGAACTTTTTGCACGAGGGA
AAGGCAACTATGAAGTTGACACTTTGCATCATATTGACGCTTCTACCATT
TGTCGATGCGCATAAGAAGCGTATTTTGATATTCGGCGGTAACGGATTTC
TAGGAAGTCACTTGGTCAAAGGTTTAGCAGACTCTGGAGAAGATTATGAA
ATCACATTGGTCAATAGAGGAAATGCCTATTTCAATTCAGACAAAGATGC
CACGAGTTACGCTGATAAGATATTGATTTGCGACCGCGATACATTGCTTA
GATCGTCATGCCCAGGTTTGCTCGGGAAATCAAAATACGACGTAGTGATT
GACTTTAGTTCGTACAAAGATCAACAAATCGAACAAGTGATTGATATCTT
GAAGAACCGAGTTGGAATCTATATCATGATTAGTACGGACGCTGTGTACG
AAGTCAGCGAGAAGCACCACTCGGAACGGACTAGAGAGGAAGATTCGAAA
AATAAACCTGAGGATTTGAAGAAGAGAGAGGAACTGGTGAAGAATAATAA
GTATGGGGCAGCGAAGAAAGGTTGTGAAGAAAGATTAATGGTTCAACGGG
AACGACTCGGTTTTCCGTACGTTATCTTGCGGCTGGCTGATGCTATTGGA
GAACGAGATACTTCGTACCGCTGGTGGAATTATCAGCTCTGGATGAACCT
TCACCAACATTTCAACCATAAAGTTGCACTACCTAATGGAGTCAAAGATC
ACAAATTCAGCATGGTTTACGCTGGAGACGTTGCAAAAGCAATTATGAAA
ATCATTCACGAGCCTGAAGTTTTCCATGATAAAGTCATTAATTTAGCTTT
CAAAGAAGACATCACATTGACTAAGATTCTGGACTTCATGCAGAAATATT
ACAAGCTTGAGAAAGCTTCTTATGAGCACGAGGACGAGAAAGGATTTTTC
CGATACCCAACTGCCGAACGCGGTCCTATAGATGTTACAAATGCTGAGAT
TCTCCTAGATTGGGAGCCAACTCCTTTTGAAGAAGCTGCGAAAGCgactt
gtaaattttttgacGAGGCTATGGTGAATCCAATATATGCTAAAGAGCGT
GAGATCGCTTTAGCGGAATTCATCGAGGAAACACTACCTGAAAGTTTTGA
TGACGAAGATATGTTTATATATGTTTTGACTAAATTGTATTCATCAACGG
TATTTAATGGTATTGATATAGGACTTGGTGAGATTGACTCAGACAACCTT
TTGGCAGAATCCAGTAATGAAGATGAAGACGAAGAtataaaagatttgaa
agaagaactgtaattattgaaaaaaaagaattaatatcttctactcttag
gttccaaataaacgcccccccgcttgttaatttttcgaaaattttccaac
ccccccggaccttattaggacccccccgtttattaatctctaagaatatt
ttcagctgtcaaagagaaggccccggctactttgctctaaatagcctgat
tttagtctatttttaccttatttttgggtttcagaagtacaatttccaac
ccccccggaccttattaggacccccccgtttattaatctctaagaatatt
ttcagctgtcaaagagaaggccccggctactttgctctaaatagcctgat
tttagtctatttttaccttatttttgggtttcagaagtacaatttccaac
ccccccggcaattaggtc Run BLAST on NCBI transcript from alignment at scaffold_58:595946..598161- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00070974 ID=TCONS_00070974|Name=TCONS_00070974|organism=Clytia hemisphaerica|type=transcript|length=2216bp|location=Sequence derived from alignment at scaffold_58:595946..598161- (Clytia hemisphaerica)
GTGTATATTTGCTGACGGTTCATTTAAAGAGTTTGAATTTCTAACTTCCT
AATTAGAAAAATGAAAGTCAAATTTAAAACTGAACTTTTTGCACGAGGGA
AAGGCAACTATGAAGTTGACACTTTGCATCATATTGACGCTTCTACCATT
TGTCGATGCGCATAAGAAGCGTATTTTGATATTCGGCGGTAACGGATTTC
TAGGAAGTCACTTGGTCAAAGGTTTAGCAGACTCTGGAGAAGATTATGAA
ATCACATTGGTCAATAGAGGAAATGCCTATTTCAATTCAGACAAAGATGC
CACGAGTTACGCTGATAAGATATTGATTTGCGACCGCGATACATTGCTTA
GATCGTCATGCCCAGGTTTGCTCGGGAAATCAAAATACGACGTAGTGATT
GACTTTAGTTCGTACAAAGATCAACAAATCGAACAAGTGATTGATATCTT
GAAGAACCGAGTTGGAATCTATATCATGATTAGTACGGACGCTGTGTACG
AAGTCAGCGAGAAGCACCACTCGGAACGGACTAGAGAGGAAGATTCGAAA
AATAAACCTGAGGATTTGAAGAAGAGAGAGGAACTGGTGAAGAATAATAA
GTATGGGGCAGCGAAGAAAGGTTGTGAAGAAAGATTAATGGTTCAACGGG
AACGACTCGGTTTTCCGTACGTTATCTTGCGGCTGGCTGATGCTATTGGT
GAGTATATCGTCTGAGATTAAGAACCCTTTTCTCATTTAAATCAAATGGA
CAGCTGGTAATATAATACAGATATTACTAAGTTCTATAGTTAAGACTATT
CAGAAAAACAGTTACGGTCTCTAATGCGGTGTTCTACTATTTGATATGCT
CCGTTATTCGATAATATCGAAAGTCCCCGTCGACAAGAAGCTCTCATAAA
CGACTATTATTCAACACGCCCCCTTGTTATTCGATGAAAATCCGATTCCC
TTTGATTATTGAATTAGAGAACGTCAACTATATAATAACTTGTACGATGC
ATAAAGGGCTTGTACCAATAGCGAGCACCTCACCAAAAACCGGGATTTTT
CAATGTGTAAAAACGCGGGTGACGTCTAGTATAGGCTATTGCACCAATCT
TAATTACAATTGAGATCGTTACATATCTAAAATTATCTAACTTCAGGAGA
ACGAGATACTTCGTACCGCTGGTGGAATTATCAGCTCTGGATGAACCTTC
ACCAACATTTCAACCATAAAGTTGCACTACCTAATGGAGTCAAAGATCAC
AAATTCAGCATGGTTTACGCTGGAGACGTTGCAAAAGCAATTATGAAAAT
CATTCACGAGCCTGAAGTTTTCCATGATAAAGTCATTAATTTAGCTTTCA
AAGAAGACATCACATTGACTAAGATTCTGGACTTCATGCAGAAATATTAC
AAGCTTGAGAAAGCTTCTTATGAGCACGAGGACGAGAAAGGATTTTTCCG
ATACCCAACTGCCGAACGCGGTCCTATAGATGTTACAAATGCTGAGATTC
TCCTAGATTGGGAGCCAACTCCTTTTGAAGAAGCTGCGAAAGCGACTTGT
AAATTTTTTGACGAGGCTATGGTGAATCCAATATATGCTAAAGAGCGTGA
GATCGCTTTAGCGGAATTCATCGAGGAAACACTACCTGAAAGTTTTGATG
ACGAAGATATGTTTATATATGTTTTGACTAAATTGTATTCATCAACGGTA
TTTAATGGTATTGATATAGGACTTGGTGAGATTGACTCAGACAACCTTTT
GGCAGAATCCAGTAATGAAGATGAAGACGAAGATATAAAAGATTTGAAAG
AAGAACTGTAATTATTGAAAAAAAAGAATTAATATCTTCTACTCTTAGGT
TCCAAATAAACGCCCCCCCGCTTGTTAATTTTTCGAAAATTTTCCAACCC
CCCCGGACCTTATTAGGACCCCCCCGTTTATTAATCTCTAAGAATATTTT
CAGCTGTCAAAGAGAAGGCCCCGGCTACTTTGCTCTAAATAGCCTGATTT
TAGTCTATTTTTACCTTATTTTTGGGTTTCAGAAGTACAATTTCCAACCC
CCCCGGACCTTATTAGGACCCCCCCGTTTATTAATCTCTAAGAATATTTT
CAGCTGTCAAAGAGAAGGCCCCGGCTACTTTGCTCTAAATAGCCTGATTT
TAGTCTATTTTTACCTTATTTTTGGGTTTCAGAAGTACAATTTCCAACCC
CCCCGGCAATTAGGTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00070974-exon-scaffold_58-1575043694:597464..598161 | TCONS_00070974-exon-scaffold_58-1575043694:597464..598161 | Clytia hemisphaerica | exon |
| TCONS_00070974-exon-scaffold_58-1575043694:595946..597015 | TCONS_00070974-exon-scaffold_58-1575043694:595946..597015 | Clytia hemisphaerica | exon |
| TCONS_00070974-exon-scaffold_58-1510915933:597464..598161 | TCONS_00070974-exon-scaffold_58-1510915933:597464..598161 | Clytia hemisphaerica | exon |
| TCONS_00070974-exon-scaffold_58-1510915933:595946..597015 | TCONS_00070974-exon-scaffold_58-1510915933:595946..597015 | Clytia hemisphaerica | exon |
| TCONS_00070974-exon-scaffold_58-1491911889:597464..598161 | TCONS_00070974-exon-scaffold_58-1491911889:597464..598161 | Clytia hemisphaerica | exon |
| TCONS_00070974-exon-scaffold_58-1491911889:595946..597015 | TCONS_00070974-exon-scaffold_58-1491911889:595946..597015 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_58 | supercontig | scaffold_58:595946..598161 - |
Blast
The following BLAST results are available for this feature:
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