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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00070982 ID=TCONS_00070982|Name=TCONS_00070982|organism=Clytia hemisphaerica|type=transcript|length=2255bpRun BLAST on NCBI protein sequence of TCONS_00070982-protein >TCONS_00070982-protein ID=TCONS_00070982-protein|Name=TCONS_00070982-protein|organism=Clytia hemisphaerica|type=polypeptide|length=499bp MDKEKSNGSQSGKNKPRRLRIKRSSTKENNRTSQTQEESSPPPYQSKLQSRun BLAST on NCBI transcript from alignment at scaffold_58:722033..740998- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00070982 ID=TCONS_00070982|Name=TCONS_00070982|organism=Clytia hemisphaerica|type=transcript|length=18966bp|location=Sequence derived from alignment at scaffold_58:722033..740998- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_58:722033..740998- >TCONS_00070982 ID=TCONS_00070982|Name=TCONS_00070982|organism=Clytia hemisphaerica|type=CDS|length=21000bp|location=Sequence derived from alignment at scaffold_58:722033..740998- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00070982 vs. Swiss-Prot (Human)
Match: WDR37 (WD repeat-containing protein 37 OS=Homo sapiens GN=WDR37 PE=1 SV=2) HSP 1 Score: 424.091 bits (1089), Expect = 1.799e-139 Identity = 248/517 (47.97%), Postives = 331/517 (64.02%), Query Frame = 2
Query: 275 MDKEKSNGSQSGKNKPRR----LRIKRSSTKENNRTS------QTQEESSPPPYQSKLQSLFAQIEKEFQKLHHQNQELHEKVDILTEKYEQLVANGVDKSDSKIPTYNDSYAGLDTNDFYSKGNKKQSAS---SLMSQKLKTRYKASTSKLVSSFKIPNSQGGNVFCHMVQKYAGHKDGIWDLDSQKTNSFLIGTASADRTAKLWNAETGQCLITYMAHNGSVNSIRFHPTEPLACTGSGDGNAHIWK----IPPLSDVRSRSPQGNSDSPAXXXXXXXXXXXXXXXNQQIMKIKHSSVEFSQHEGPIAVADWWENGSQIVTASWDRTVKLWDVEKATAFYTMEGHELEITHASTHSSHKLIVTSSQDTTFRLWDFRQPYMHSVNVFQGHTDTVTSAVFTTKADHVVSGSDDRTVKVWDLKNMRSPLTTIRLDSAINRLSLSPAQNIIAIPHDNRHVRLYDLAGNRMSXXXXXXXXXXXXIVCATCWHDDTNTNKPV-NLLTAGFDKQILGWKVGF 1771
M E ++ S + + K +R L I+R+++ E RT + Q+ P +S L LF QIE+EF+ L+ +N EL ++D L E+ L A G +D + SKG K AS S +SQKLKT YKASTSK+VSSFK S+ C +V++Y GH+DGIWD+ KT ++GTASAD TA LW+ ETG+CL+ Y H GSVNSI+FHP+E LA T SGD AHIW+ +P V S G D S +D+ + +G+ + + +++ +S++ H+G + +DW G Q VTASWDRT L+DVE + +++ GH+ E+TH TH + +L+VTSS+DTTFRLWDFR P +HSVNVFQGHTDTVTSAVFT D+VVSGSDDRTVKVWDLKNMRSP+ TIR DSAINR+++ Q IIA+PHDNR VRL+D++G R++RLPR RQGHRR+VC + W +D PV NL T GFD+Q +GW +
Sbjct: 1 MPTESASCSTARQTKQKRKSHSLSIRRTNSSEQERTGLPRDMLEGQDSKLPSSVRSTLLELFGQIEREFENLYIENLELRREIDTLNER---LAAEG---------------QAIDGAEL-SKGQLKTKASHSTSQLSQKLKTTYKASTSKIVSSFKTTTSRAA---CQLVKEYIGHRDGIWDVSVAKTQPVVLGTASADHTALLWSIETGKCLVKYAGHVGSVNSIKFHPSEQLALTASGDQTAHIWRYAVQLPTPQPVADTSISGE-DEVECSDKDEPDLDGDVSSDCPTIRVPLTSLK--SHQGVVIASDWLVGGKQAVTASWDRTANLYDVETSELVHSLTGHDQELTHCCTHPTQRLVVTSSRDTTFRLWDFRDPSIHSVNVFQGHTDTVTSAVFTV-GDNVVSGSDDRTVKVWDLKNMRSPIATIRTDSAINRINVCVGQKIIALPHDNRQVRLFDMSGVRLARLPRSSRQGHRRMVCCSAWSED----HPVCNLFTCGFDRQAIGWNINI 487 The following BLAST results are available for this feature:
BLAST of TCONS_00070982 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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