TCONS_00070987 (transcript) - C. hemisphaerica

Overview
NameTCONS_00070987
Unique NameTCONS_00070987
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1545

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00070987 ID=TCONS_00070987|Name=TCONS_00070987|organism=Clytia hemisphaerica|type=transcript|length=1545bp
ATTAACAATTTACCTTACCATTTAAATTCTTAGAATCAGTTTATGCCTAG
TagcaaattatttgaaaaattataaaaaatggaGGACATGGATTGGCTag
atgaaagtgaaaatttagaaaatgatttcaattctttgaaacataaacat
acaaagGATGGATTTCGTGAAGGAATTTCCCAGGGCCAAGATTACATTCT
CCAGACTGCATTCAACGAAGGTTTCAAATCATCtggcatatttttcgaaa
aactttCTCATTTCAGAGGGAAAGTCAGtgCGATATATATGTTTCTTATG
AATCAGCCTGCTTTTGTGAAAGAAACCGGAGATCAATTTGAAGCTTTGAT
CACCAAGcttgaagattttgaaaataaccAAAGTCATATTGATGAAATAG
CTGCTCAGAATAACAGACGGAAGACAGAAGAAAGAGACTTGGGAGGTCAT
AAGAACACAAGGCATGATTCTATGGATAACACTACAATAGATACACTTAT
TGATGGCTTTGATAATATGCAACCCCAAAATGATAATTGTTCTAGCGAGC
AAAAAGAACTTAAAAGAGGATGCAGTGACTGTAATTGTAAAGAGCAAGCC
AATTCACCCCCCTCGAAAACACATGATACTAGTTATATTTACGAAAACTC
CCAGAACATCTTTGACAATAAATTAAAGGGAGATTTAGATGAACATATTG
GAACTATCAAGAATTTAATTGAACATGAAATGACTTTGATAATGACAAAT
TTTGATTCcgatacaaaaaatcaaattataaaatgtttaaaaagtattga
aaaatagGCATTGTTATTATTTCAAGACAAGACTTGCATTCCCATATAAA
TATAGCTAATATAAACAATGTTTGGTAATGTCGCTTTTATTGCCAGTGGT
GGTGAACAGTTTCTTGTCTCTAATACATAACAACACATGCcccttttcaa
tattttattatataCTTATCAGTTAATGAAGGTCGAAAACACATATaata
atttgttaaaaaaataaaccaCTTCTCTTGTGTTATTTACAtaatattcg
aatatttcttttgATCTTACTCAGAAACACGTAGTGCCGATTCTTCTCGG
AGCAAACCACTTATTTGTGCACTGTTTGTTTTCACAGATGTTTCATTGCT
TTGACATTAAAGGTCTAGTTCTCTAACATGTGTGTTTATTTTTTGCTACA
ACAAGCTTTAGAGCAAGCAGGTGCGCAAGTTGGAGCACAAGTTGGACCAC
ATGGCattggtggtggtggtggtggtggaggtggtgcaGCGCAGCAGCTT
GGCTGGCAGGCTGGTGCACATGCGGCAGCACATCCCATTccacatgggtt
tgcacttctCTTCTCGATCTCtttaaaataagaaaacatGTTATTTATGA
TGATATTCAGAATTAATAATAAACAATGAAGTATTGCTTTTTTGTATTCT
CTCTCTCTTTCAGGttcagataaaaataaaaagtaaacaagaaagtcaaa
tcaaaatgaaaaatgttgataGATGTACACTTACCAAGTTCTCGT
Run BLAST on NCBI

transcript from alignment at scaffold_58:848100..851482-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00070987 ID=TCONS_00070987|Name=TCONS_00070987|organism=Clytia hemisphaerica|type=transcript|length=3383bp|location=Sequence derived from alignment at scaffold_58:848100..851482- (Clytia hemisphaerica)
ATTAACAATTTACCTTACCATTTAAATTCTTAGAATCAGTTTATGCCTAG
TAGCAAATTATTTGAAAAATTATAAAAAATGGAGGACATGGATTGGCTAG
ATGAAAGTGAAAATTTAGAAAATGATTTCAATTCTTTGAAACATAAACAT
ACAAAGGTAAATACTTTTTTAAGAATTTTTGATTTTCTCTCAGTCTAAGC
ACTTTGTTGATTCAAGTTCATTTTGGAAGAAACAATGTCTTGTAAAAATC
AGTACCAATGATAAATAATCAATTGTATGTCTAGGCCTTCATGCTGCTTC
AGCTTCTTGTTTATATATGATGCACACTTCTTTATAAGATTAGTGTTTTT
TGGCTGATGGTGGAGCATTCTATCAAATCTATCAAAGATGTCTGATGAAG
TTTGCATAGAGTTTTCATATTTCACAAATAAAATGTGCTTTAATAACACA
ACATTACAGTAATTCTTTTGAAAAAATGTTATTTTATTATATAAGGATGG
ATTTCGTGAAGGAATTTCCCAGGGCCAAGATTACATTCTCCAGACTGCAT
TCAACGAAGGTTTCAAATCATCTGGCATATTTTTCGAAAAACTTTCTCAT
TTCAGAGGGAAAGTCAGGTAAGTTAATAACTATACAAACTATAAAGCTCT
TGAAAAAGACTTGATGATGTTACTGTTTTACTCCACTTTGTTTCTTCCCC
TTCCTCTGCCATGTATCTGTTTTTCAATTATTTATACTTCACATTAAATA
AATGGTAGCTGTATCAAATATTTGTTTATTTTGTTTGTTTTAGTGCGATA
TATATGTTTCTTATGAATCAGCCTGCTTTTGTGAAAGAAACCGGAGATCA
ATTTGAAGCTTTGATCACCAAGCTTGAAGATTTTGAAAATAACCAAAGTC
ATATTGATGAAATAGCTGCTCAGAATAACAGACGGAAGACAGAAGAAAGA
GACTTGGGAGGTCATAAGAACACAAGGCATGATTCTATGGATAACACTAC
AATAGATACACTTATTGATGGCTTTGATAATATGCAACCCCAAAATGATA
ATTGTTCTAGCGAGCAAAAAGAACTTAAAAGAGGATGCAGTGACTGTAAT
TGTAAAGAGCAAGCCAATTCACCCCCCTCGAAAACACATGATACTAGTTA
TATTTACGAAAACTCCCAGAACATCTTTGACAATAAATTAAAGGGAGATT
TAGATGAACATATTGGAACTATCAAGAATTTAATTGAACATGAAATGACT
TTGATAATGACAAATTTTGATTCCGATACAAAAAATCAAATTATAAAATG
TTTAAAAAGTATTGAAAAATAGGCATTGTTATTATTTCAAGACAAGACTT
GCATTCCCATATAAATATAGCTAATATAAACAATGTTTGGTAATGTCGCT
TTTATTGCCAGTGGTGGTGAACAGTTTCTTGTCTCTAATACATAACAACA
CATGCCCCTTTTCAATATTTTATTATATACTTATCAGTTAATGAAGGTCG
AAAACACATATAATAATTTGTTAAAAAAATAAACCACTTCTCTTGTGTTA
TTTACATAATATTCGAATATTTCTTTTGATCTTACTCAGAAACACGTAGT
GCCGATTCTTCTCGGAGCAAACCACTTATTTGTGCACTGTTTGTTTTCAC
AGATGTTTCATTGCTTTGACATTAAAGGTCTAGTTCTCTAACATGTGTGT
TTATTTTTTGCTACAACAAGCTTTAGAGCAAGCAGGTGCGCAAGTTGGAG
CACAAGTTGGACCACATGGCATTGGTGGAGGTGGTGGAGCTGGAAGGTTG
ATGACTGTTGGTGGAAGGTTGACGTGTTGGCATGGTGGTGCAGCGCAAGG
GGCTGGGGCTGGTGGAGCACATGGTGGGGCGGCACATGGCATAGGTGGTG
GTGCGCATGGTGGGGCAGCACATGGCATAGGTGGTGGTGCACATGGAGGG
GCAGCACATGGCATAGGTGGTGGTGCACATGGTGGAGCAGCGCATGGCAT
AGGTGGTGGTGCGCATGGTGGGGCGGCACAAGGCATAGGTGGTGGTGCAC
ATGGTGGGGCAGCACATGGCATAGGTGGTGGTGCGCATGGTGGGGCAGCA
CAAGGCATAGGTGGTGGTGCGCATGGTGGGGCAGCACAAGGCATAGGTGG
AGGTGCGCATGGTGGGGCGGCACAAGGCATAGGTGGTGGTGCACATGGTG
GGGCTGCACATGGCATAGCCATTGGCATTGGTGGAGGCATGCATGGTGGG
GCTGCACATGGCATGGGTGGAGGCATGCATGGTGGGGCTGCACATGGCAT
GGGTGGAGGAGGTGGTGCGCAACAGCTTGGTCGGCAGGCGGGGTAGCAAG
CTCTTGGACATCCAGCAGGGCATGGTGGGGGAGCTCGAGCAGGTGGTGGG
AGAGCAGGTCTACAACAAGCTGGTGCACAAGATGGTTGACACATAGGCAT
TGGTGGTGGTGGAGGAGGGGGCATGCAACATGCTGGTGCACATGAGGGTT
GGCACATAGGCATAGGGGGTGGAGGTGGTGGCATGCAACAAGCAGGAGCA
CAAGAGGGCTGACAAGCTGGCATAGGTGGTGGGGCACATGGTGGGGCGGC
ACATGGCATGGGTGGTGGGGCACATGGAGGTGCAGCACATGGCATAGGCA
TAGGCATTGGTGGTGGGGCACATGGTGGAGCAGCGCAAGGCATAGGTGGT
GGTGCACATGGTGGAGCAGCACATGGCATAGGTGGTGGGGCACATGGAGG
TGCAGCACATGGCATAGGCATAGGCATTGGTGGTGGGGCACATGGTGGAG
CAGCGCAAGGCATAGGTGGTGGTGCACATGGTGGAGCAGCACATGGCATA
GGTGGTGGGGCACATGGAGGTGCAGCACATGGCATGGGTGGTGGGGCACA
TGGAGGTGCAGCACATGGCATGGGTGGTGGGGCACATGGAGGTGCAGCAC
ATGGCATAGGGGGTGGTCGAGGTGGAGCGTTACAACACCCTGGCATAGCT
TGACATTGTGATGGACAAGGCATAGGTGCAGCAGGTTGTGCAGCGATCAT
GGATGACCAATGACTACAGATTGGTGCGCAGCCAAAGGCTGGCATAGGTG
GTGGTGGTGGTGGTGGAGGTGGTGCAGCGCAGCAGCTTGGCTGGCAGGCT
GGTGCACATGCGGCAGCACATCCCATTCCACATGGGTTTGCACTTCTCTT
CTCGATCTCTTTAAAATAAGAAAACATGTTATTTATGATGATATTCAGAA
TTAATAATAAACAATGAAGTATTGCTTTTTTGTATTCTCTCTCTCTTTCA
GGTTCAGATAAAAATAAAAAGTAAACAAGAAAGTCAAATCAAAATGAAAA
ATGTTGATAGATGTACACTTACCAAGTTCTCGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044120XLOC_044120Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00070987-exon-scaffold_58-1575043694:851327..851482TCONS_00070987-exon-scaffold_58-1575043694:851327..851482Clytia hemisphaericaexon
TCONS_00070987-exon-scaffold_58-1575043694:850866..850987TCONS_00070987-exon-scaffold_58-1575043694:850866..850987Clytia hemisphaericaexon
TCONS_00070987-exon-scaffold_58-1575043694:849709..850689TCONS_00070987-exon-scaffold_58-1575043694:849709..850689Clytia hemisphaericaexon
TCONS_00070987-exon-scaffold_58-1575043694:848100..848385TCONS_00070987-exon-scaffold_58-1575043694:848100..848385Clytia hemisphaericaexon
TCONS_00070987-exon-scaffold_58-1510915933:851327..851482TCONS_00070987-exon-scaffold_58-1510915933:851327..851482Clytia hemisphaericaexon
TCONS_00070987-exon-scaffold_58-1510915933:850866..850987TCONS_00070987-exon-scaffold_58-1510915933:850866..850987Clytia hemisphaericaexon
TCONS_00070987-exon-scaffold_58-1510915933:849709..850689TCONS_00070987-exon-scaffold_58-1510915933:849709..850689Clytia hemisphaericaexon
TCONS_00070987-exon-scaffold_58-1510915933:848100..848385TCONS_00070987-exon-scaffold_58-1510915933:848100..848385Clytia hemisphaericaexon
TCONS_00070987-exon-scaffold_58-1491911889:851327..851482TCONS_00070987-exon-scaffold_58-1491911889:851327..851482Clytia hemisphaericaexon
TCONS_00070987-exon-scaffold_58-1491911889:850866..850987TCONS_00070987-exon-scaffold_58-1491911889:850866..850987Clytia hemisphaericaexon
TCONS_00070987-exon-scaffold_58-1491911889:849709..850689TCONS_00070987-exon-scaffold_58-1491911889:849709..850689Clytia hemisphaericaexon
TCONS_00070987-exon-scaffold_58-1491911889:848100..848385TCONS_00070987-exon-scaffold_58-1491911889:848100..848385Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_58supercontigscaffold_58:848100..851482 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
8.49765	8.70545	2.46527	2.08583	5.3289	3.43133	0.160847	0	0	0	0.226145	0.152856	0.0328405	0.139876	0.0602006	0.554284	0.206714	0.079828	1.25875	1.20775	0	0	0	0	0.205538	0.395911	0	0	8.81592	10.632
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00070987 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top