TCONS_00071000 (transcript) - C. hemisphaerica

Overview
NameTCONS_00071000
Unique NameTCONS_00071000
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length831

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00071000 ID=TCONS_00071000|Name=TCONS_00071000|organism=Clytia hemisphaerica|type=transcript|length=831bp
ATTTTGTGTATGGTGTTTATTTTACACGACAGCAAAACAAACGTAATAGC
TTTTCATGAAAAACCACCGAGTTGCAAGGATATAACTTAAGTGGGGGAAG
AACATCCATACCACTTAAACTCGGCTATTATTCATGATGGACATGCGACT
CATTTTGATCACTTTGGCGCTTCAATGGAATGCTCTTTATGGGTTTCCAC
TTAAAGaAGAAAGTGACGTTCTTCCTGAACTGGAATACCGAGATTTGCTG
GTTTCAGGATACATCCCACCTCAAAACGACCCTTCGGACGTCTACCTACC
ATCTCAACAAAAAGACGATTTGCTAGTTTCAGGATACATCCCACCTCAAA
ACGACCCTTCGGACGTCTACCTGCCATCTCAACAAAAAGACGATTTGCTA
GTTTCAGGATACATCCCACCTCAAAACGACCCTTCGGACGTCTACCTGCC
ATCTCAACAAAAAGACGATTTGCTGGTTTCAGAATATTTTCCACCTTTGG
CAAATGATCCTTTACTTGGCTTAGACAATTATTTTCCCCCaggaaaagaa
gattttttatcaaagaaaCGAAACGCCGAACGTGATCAGGAAGATAAGCT
TTTGGAAAGCTTCCTTCATTAAGTCAAGCCACAAACATTTGAACATTGAA
TATTCTTTGATcaagttgaaatattttttggcaAATGCTTTATTTAGATT
AACATGTATTTTTATAAGGCGTTTTCTCTCTACATTTTCGTATTGAAAAA
GTATAATTCAATAAATAACTCATAATTATCCTTCCAACGAACACATAGCA
GCATATGAAAAGATTTTCACCTATTTCTAAC
Run BLAST on NCBI

transcript from alignment at scaffold_58:939668..941008-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00071000 ID=TCONS_00071000|Name=TCONS_00071000|organism=Clytia hemisphaerica|type=transcript|length=1341bp|location=Sequence derived from alignment at scaffold_58:939668..941008- (Clytia hemisphaerica)
ATTTTGTGTATGGTGTTTATTTTACACGACAGCAAAACAAACGTAATAGC
TTTTCATGAAAAACCACCGAGTTGCAAGGATATAACTTAAGTGGGGGAAG
AACATCCATACCACTTAAACTCGGCTATTATTCATGATGGACATGCGACT
CATTTTGATCACTTTGGCGCTTCAATGGAATGCTCTTTATGGGTTTCCAC
TTAAAGGTATTTTGTTGAGTTTTATTTAACCAATAAAATGTGTCCATTAT
AGCTTTTTTTCTTGAAGTATTTTCTCATTATCACAATATCCCACCTCATT
GATTGTGATTGAAGATGAATTTGATTTCTTTGTATTTTTAGAAGAAAGTG
ACGTTCTTCCTGAACTGGAATACCGAGATTTGCTGGTTTCAGGATACATC
CCACCTCAAAACGACACTTCGGACGTCTACTTACCATCTCAACAAAAAGA
CGATTTGCTAGTTTCAGGATACATCCCACCTCAAAACGACCCTTCGGACG
TCTACCTACCATCTCAACAAAAAGACGATTTGCTAGTTTCAGGATACATC
CCACCTCAAAACGACCCTTCGGACGTCTACCTGCCATCTCAACAAAAAGA
CGATTTGCTAGTTTCAGGATACATCCCACCTCAAAACGACCCTTCGGACG
TCTACCTACCATCTCAACAAAAAGACGATTTGCTAGTTTCAGGATACATC
CCACCTCAAAACGACCCTTCGGACGTCTACCTGCCATCTCAACAAAAAGA
CGATTTGCTAGTTTCAGGATACATCCCACCTCAAAACGACCCTTCGGACG
TCTACCTACCATCTCAACAAAAAGACGATTTGCTAGTTTCAGGATACATC
CCACCTCAAAACGACCCTTCGGACGTCTACCTGCCATCTCAACAAAAAGA
CGATTTGCTAGTTTCAGGATACATCCCACCTCAAAACGACCCTTCGGACG
TCTACCTGCCATCTCAACAAAAAGACGATTTGCTGGTTTCAGAATATTTT
CCACCTTTGGCAAATGATCCTTTACTTGGCTTAGACAATTATTTTCCCCC
AGGAAAAGAAGATTTTTTATCAAAGAAACGAAACGCCGAACGTGATCAGG
AAGATAAGCTTTTGGAAAGCTTCCTTCATTAAGTCAAGCCACAAACATTT
GAACATTGAATATTCTTTGATCAAGTTGAAATATTTTTTGGCAAATGCTT
TATTTAGATTAACATGTATTTTTATAAGGCGTTTTCTCTCTACATTTTCG
TATTGAAAAAGTATAATTCAATAAATAACTCATAATTATCCTTCCAACGA
ACACATAGCAGCATATGAAAAGATTTTCACCTATTTCTAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044124XLOC_044124Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071000-exon-scaffold_58-1575043694:940803..941008TCONS_00071000-exon-scaffold_58-1575043694:940803..941008Clytia hemisphaericaexon
TCONS_00071000-exon-scaffold_58-1575043694:940612..940667TCONS_00071000-exon-scaffold_58-1575043694:940612..940667Clytia hemisphaericaexon
TCONS_00071000-exon-scaffold_58-1575043694:939668..940236TCONS_00071000-exon-scaffold_58-1575043694:939668..940236Clytia hemisphaericaexon
TCONS_00071000-exon-scaffold_58-1510915933:940803..941008TCONS_00071000-exon-scaffold_58-1510915933:940803..941008Clytia hemisphaericaexon
TCONS_00071000-exon-scaffold_58-1510915933:940612..940667TCONS_00071000-exon-scaffold_58-1510915933:940612..940667Clytia hemisphaericaexon
TCONS_00071000-exon-scaffold_58-1510915933:939668..940236TCONS_00071000-exon-scaffold_58-1510915933:939668..940236Clytia hemisphaericaexon
TCONS_00071000-exon-scaffold_58-1491911889:940803..941008TCONS_00071000-exon-scaffold_58-1491911889:940803..941008Clytia hemisphaericaexon
TCONS_00071000-exon-scaffold_58-1491911889:940612..940667TCONS_00071000-exon-scaffold_58-1491911889:940612..940667Clytia hemisphaericaexon
TCONS_00071000-exon-scaffold_58-1491911889:939668..940236TCONS_00071000-exon-scaffold_58-1491911889:939668..940236Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_58supercontigscaffold_58:939668..941008 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.692789	0.345912	0.530801	0.334595	0.230757	0.425478	31.3434	27.5161	103.545	48.8423	71.2371	80.147	23.1128	18.6519	75.0197	85.2982	11.8726	11.6437	9.75463	13.3878	0.0591749	0.167288	0.326994	0.356742	0.0657114	0.0586458	0.0953447	0.423438	0.189924	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00071000 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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