TCONS_00071018 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00071018
Unique Name	TCONS_00071018
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	2857

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at scaffold_58:1028326..1044664-

transcript sequence

>TCONS_00071018 ID=TCONS_00071018|Name=TCONS_00071018|organism=Clytia hemisphaerica|type=transcript|length=2857bp
AGAAAATAAACATGAGTCGAAAATGGCTGCTGGAAATTTTGATGATTGCA
CCacagaattttgaaaatgatatgaTTTTACAAATGATTTTGGCTTTCTT
ATCAGGCAATTCACTGTTTGGATGTGTAACATAAATGGCAGGTAGAAGAC
TGAGGCAATTTTTTACTGGGAGAAGGGGCAGTCAAAATGGAGACAGACCT
TCCAATGAAGAGGACGACGCAACTGCTCAAGGTGAGCAACAACTCAGTCA
AGTTGAGCAACAGCTTGGTCAAGTTGGATTAGATGATCAATCATCAAATG
ATGCTCCTGGAGCTGTCGGAGGCCCACCTATTGTTCCTGCTGGAGCATCT
TCCGGAAATGGAGCAGTAGCAGGAGGTTCTGGAGGTGCCATTGGTGGTGA
CGGAGTCTACACAACTAGCAAAGAGATGTACGATAATAGTACAGACTACA
TTGTAGCATCTTTAGCAGAGGGAATGGTACCTAATGAGGACCAGAGTGGA
TTCTCTTTCCAAATAGAACTAATCAAACGGCTGGAGAGGTTTCTTATCCT
TGGTACAGAGGGAAATACTTACTATGCAAGTGAAAAAGACAGAACATATG
AAAACATAAGTTGTATAAATGAGCTCTTAGAAAAAGGAGAAGTGGATAAG
GTTTTGCACATTCTCAAAACATTTAGTGTTCAAGGGAGATGTCCAAAAGA
GGAACCAATCCTGGTTGCTTTGGTGCAATGTTGTTATTTCCAAAATGCTG
AGATCCGTAAGAAGGCTTATGATTTAGTTAGTCCAATTTGTAATATACCA
ACAAAGCTGTTTAGATTCATTGAGCTTTGTCAGCAAAACGTCAATCAGGA
AAGAACAGCTAAGAAGCATTTAACAGAATTACCAAAAGAACTCAAGAAGA
ATCCTCTAAAGCAGAATccattaaaaaggaaaaaagaacctATGGAATCA
GAAGAATGCATAGAAGAAGCACCTGAttcaaaaaaagccaaaaagcagaa
gaagaaaaatagcCCTTTCAAATCTTATCACACTGACAAAGCTCGCTCCT
CAGGCTGGGGGCGCATGCGTAGGAGAGGGATATCTAGTTTTTATTGTGAT
AAGAATAAAAGTGCTGAACGGTTGCTGTATTTGTTGACAAAGTTTAAAAA
CCGAAACAATTGGAATCATCGGCAAGTTCTTGGTTATGCTCATCCAAAGA
TATCTAAAGATGATGATGAACAAGATGGCAAGAATTTGGTCCTGGCGTAC
TGCACCAGAGGCGTGGAAGGTTTTCAGAAAAAGCTAAACGAAATCAAGAG
AAGATCAGCAAATTGTTTGCCACAGAATGTGTCTCGTATTCAAAACTTTG
TTCAAATTCTTGAACAGGTCAGTAAGCTATCACCAGAAAATGAAGGTGAC
GAAGAGAAGCTATTGCAATTTTTACGTGGTTATGGCATTCGTGAAAGTGC
TGACGAGTTTGCAGTTGAAATTGCACTCCCTGGAGTCCCCCTCACTCCAC
CTCCACCATCATctggaaaagaaaaagcaaaaaattctAAGCAACCATTC
CAAGTTGTGCGAGAACATATACCAACTGCGTTCCTCAGTTCTGCAAAGGT
TTGGGAAGCATTGTTGCAAGACATGCCAATGACAGCTATGCTGCGAAACT
TGGGGAAAATGACTTCCCTTGGTTTGTTTCAGAAGCCCGAAAACTTGAAA
ATTGTATTGGACGCTTTAGGTGATACAAATCGTCTTCAGAAAGCAAGAAT
TCATCCCATTAAGCTTTTGATTGGGATGAAAGCGTATGAAAATGGTGCTT
CATTAAGTATGATGAGTTCTGTCACGAAGACAAACACAACAACATGGGAA
GCAaaccaagaaattttgaaaatcttggaTAAAGCCTTCTATAAAAGCTT
CAAGCAACCAGAAACGCAAGATGCATTTAGAACAGGGAAACGGTTTATGT
TGGCATTGGATGTCAGTGGTTCAATGACATGTGGTGGCTGTAATGGTTGT
GAACAGCTCACCCCCTCCATAGCTGCCACCGCACTCTCTATGGTCACATG
GAATATAGAAGAGCACGTGGAAATGGTGGCCTTTGGTGGTCGTTTGGAGC
GATTGGAAGATCATGGTTTACGCAAAGATTTGACCATCAATGATGCTTGG
AGGAAGATGAGTCGGATCAACTTTGGTTCAACAGATTGTGCGTTACCAAT
GAATTATGCGATAGACCGTAATCTTGATATTGACGTCTTCATTGTTTACA
CCGATTCCGACACCAATTCATATAATCATCCTCACAAAGCATTGCAAAGA
TATCGCGAAAAGATGGGTAAACCTAACGCTAAACTCATCGTGATCGCCTT
GACATCCAATGGGTTTTCTATCGCCGATCCTAACGACCGCCACATGCTGG
ATGTTGTTGGCTTTGATCCAGCTGTCCCTGAGATGATCTGCAATTTTGTT
AACGACAGTTATTGAGCATACCACTCATAACATTGGAGTCTTTCTCGGTG
GCTTGAGTGATCTCAGTACCACTGGACTcttttttgaaatcgaaagctgT
ACCAAACTATGGGCTCATTAACCTTGACAGTTTAGGCATTCTTACCTGAG
TTGTGCGGGATTCGATTGAGAAGCATAAGAATCTATAAAAAGAGTCATAA
GGCAGGGAACAAACAATGATATTTCTTGTATAGAAGTAGTTTACATAGAA
TGCTACACGTTGAGGAGCTGGAAACCAGTGTTTCATTCTTTTCCAATTTG
ACTTTACTTCAATAAACGATGAAATTTCATATACTGTACATACATGCAAG
Gaatcatttcaagttttatatttaatttaattttattttattttattgta
aaCAAAC

Run BLAST on NCBI

transcript from alignment at scaffold_58:1028326..1044664-

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00071018 ID=TCONS_00071018|Name=TCONS_00071018|organism=Clytia hemisphaerica|type=transcript|length=16339bp|location=Sequence derived from alignment at scaffold_58:1028326..1044664- (Clytia hemisphaerica)
AGAAAATAAACATGAGTCGAAAATGGCTGCTGGAAATTTTGATGATTGCA
CCACAGAATTTTGAAAATGATATGATTTTACAAATGATTTTGGCTTTCTT
GTAAGTTTTAAGTATTTTCATGTAAGTTTACCTATTTTATTTTTGTCTAT
TCTTTATAAAAATTTACTTTACAGTACCCTAACTATTTTGAAAGTTTTGC
AGAAGAAGGAAAAAAAATGAATGAAACAGTAGCATAGTCATAAAAATAAT
CAACAAAACAAAATAAAATTTTATACAGATCAGGCAATTCACTGTTTGGA
TGTGTAACATAAATGGCAGGTAGAAGACTGAGGCAATTTTTTACTGGTAA
GTTTATTTATTTTTAATGAGTCAATGGGCTATATTCCAAAAAAAGATTAC
ACTGCAACAGGGGAGGGGGTCGTCGTTTGTATAAGTAGGAACTAGTAGTA
ATGACTCGTAACGTACCGGAACAACCCAGAGCAACCCAGAACAACCCAGA
ACGACCTAAGAGCCACCACTTTTGGTCGGCAAAGAATTCGCTAAGTCTTT
TTTCCGCCACGTATTACGCTCAAGCGCAGTTACTACAGAACAGTGTTGTG
TTGAGTTTAACTGATAATACTGAGGTAAGCATGCCAGAATAATCAATCAG
AATATTTCAACCAATCAGATTTCGTATTTTCACCAGCCTATTACATTTTT
CGTCCGTCGTCGTGATTATTCTGGTATACTTAACCCCAGTAGTTTCTCGT
TCTAGAGCAAATCCGATATTTTTTGTCTGCCTAGCTTTCGGGTTAGCCTG
TAGAAAAGTGCCGTAGCGCGAACGAAGGCTTCGTTCGTCCGCCGTCCTGA
ATTATCTACCTCACTAAGACCACTAATAGCTGTACTTCAAAGGGCGACAT
TCCATCTCTCTTCCACAGACCTGTATAGCCCCCGATGAGGGCTAGACACT
TGACTAAAATCATGCAATTTCACCCATTTGAAAGATGTGAAATAGCGTTT
GCCGCCTTCTTTCTTGATCTTGCGCACTGAAAACAATTAAAATGCTAGAT
CCTATCCATCGGCATAAAATTTAAAAAGTCAATTTTTTTTGCTGGAGAAA
GCTTTAAGTTGCCTATCTAGCCCTTCGACTTTTCAGATCTGTGCTCTCTC
CCCGATGGGTGGAATATTGGCGCTTTGTCCGTACCCGTGGGCGGAACAGA
CCACCTTGGTCGTTCTGGGTCGTTCCGGGTCGTTCTGGGTTGTTCCGGTA
CGTTACGGGTCATTACTACTAGTTCCTATTTATACAAACGACGGGAGGGG
GCACGTATAGACTTTTTTGCCATATTGAATTGTATGCAAAAATTATGGTG
TCCGAATTGCCTTGGTGAGATTGTAATTAATTTTCCCACCGGACGATGTA
CGATGGTGTTTTTCTACCGCTTTTGGACTGCTCGTAAAAACGTGTGTCCC
TGGTCAACTGCAGTCTTTACTTCGTAGGTCGGGCGAGGACGAATCTTGAA
AGAGCGCAGAAGTGTTATATGGCGTCATATGAGTCAAAGGCGGCTACGGA
TGAGTACAGTGGGAATAAATCTTTGAGGAATAGCTCCCATCATACATTGT
ACGGTGAAGCCCCCGTATCTTGTACGGACGGTGGTCAAAATAGGTTAACT
TGTTCCCACTTTACGCCCACTGGAGAACACCGTACAATGTACGGCAGTGT
CCAGGGTCATGAACACAACCACAACATTAGACATAAACTAAACCTGAAAA
ATCACCAGCGAAGTTAAAAAATAATCCTTATTCGGCTGACTGTAAATTAT
TCTCCTAGGGAATAGAACCATCAAATGATCAAATAAAAATATTGATCTGA
ACCCCCTGATTTACTGGGGCTTTTACAATGTCTTACACTTGACATGACAG
GGGTTTTCTTGCACAGGAAGATAAATTTCCATCAGATGACATCTTATGAG
GATTTCTATATTTTTAAAGGGCAAGGTTCTTTAGAAACTGGCTGAAAGTG
TGTTTTTCGGAAAAAAGATTTTGGTTGTAGAAATCAGATTTTCTTTTTGG
GGAAATTCCCTGTTTTGTCATTTTTCAAGCTTCATCATTCATGTTTTTCA
AGCTTATGTATCTAATGCTATCCCTGTCATCTTTTCTCTTTTTTTCGAAC
ATCATCTTTATTCAGCATGTTTCTTCATTACTATCTTATCTCAGGAAGGT
CCATTCAGCATGTTGCTTGTTCATTTTATAACATTTTACACCTGTTCCAT
ATTCTCCCTAAGGGTGTCCTGTAATTATCCCAAATGTTCTGAGTCTTTAT
GCAGGACACCTTTGAGATGAATTTTAAAACAATAAACTAAATTTCTTGAA
TGTTTAATGACCATATTTTGGCAAATTTTAATATTAAAAATCGAATTTGG
ATNATGAATGTGTAATGACCATATTTTGGCAAATTTTAATATTAAAAATC
GAATTTGGATGTCTAGGTAGGATAAAGTAATGTCCAAATAAGTCAAAAAC
GTCCTGTAGTTGCTCCAGTTGACTTTACATATCCTCGTTGGTAAGATTTT
GTCTCTTAGTAATGTTTCTACTGTTTGATTTTTTCTCCAGATATACATGA
AAGTTTGTGTCAAATAGCACCTCTTATTATTAGATTCTTATTCACTTTAA
GATAAGATTGTACTGTTGAAGGATTTTATATAAAACATTTGAGTAGGTTC
AGCTTATAGAGACTCTAGTGTAACCTCTAGAGGGTGGACTTCTCCCAGTG
GCTGTAACTTAAGAAATGAAAAACTTTTAATGATTGATCAATTAAAAACT
ATATTTCTTACTTTCCTACTTCTATAATAAGTTCTTGTTCCTTATTTCAC
TACTATTAGTTCAGTACTAATCATCATCATCATCATCATCATCATCACAG
GCCATATTTTAGAAAAGCAAGACAGCTTCTGTTGGAGGCCAAAAAGGGCA
CTTTTTCTTATTATGTTTTTCCACTAAAAAGGCTGTTTTTATCAAAATTT
TAGTAATTTCAAGAGGGGCAGCGTCCGATAACTGAACGCTTAAAGGGCAT
GAAAAATGGCCTGCATCATCTTTCGACATACGTCGGAAAATTTGCGTAGC
GTTCCTTCAAAATACTCGATCTTGCATGACTGTCTTTATTTCCTCAATCT
CGAGACCTGTTTCCCTCTTCAGAGTATCCAGGAAGGTTAACTTCTTTAAT
CTTACTAGACCCGTTGGTGACCAGAAAAGAAGTCTGAATATCATTTCTTC
TTTTGCTCAAAAACAGTGGCCTGCAAACTGAAGTCTTCTATTGGTGAGGA
TACGTGAGATCCTTGGTAGATTATTGCATATTTGATTGAGGTACTAATAT
TGCATAGATCAAAAAGAGCCTTGTATGGTTATGTATCTCTTCCACTGGAA
TATGACATTAAAATAATAAATGAATTTACATCTGTTCATTTAGGGAGAAG
GGGCAGTCAAAATGGAGACAGACCTTCCAATGAAGAGGACGACGCAACTG
CTCAAGGTGAGCAACAACTCAGTCAAGTTGAGCAACAGCTTGGTCAAGTT
GGATTAGATGATCAATCATCAAATGATGCTCCTGGAGCTGTCGGAGGCCC
ACCTATTGTTCCTGCTGGAGCATCTTCCGGAAATGGAGCAGTAGCAGGAG
GTTCTGGAGGTGCCATTGGTGGTGACGGAGTCTACACAACTAGCAAAGAG
ATGTACGATAATAGTACAGACTACATTGTAGCATCTTTAGCAGAGGGAAT
GGTACCTAATGAGGACCAGAGTGGATTCTCTTTCCAAATAGAACTAATCA
AACGGCTGGAGAGGTTTCTTATCCTTGGTACAGAGGGAAATACTTACTAT
GCAAGTGAAAAAGACAGAACATATGAAAACATAAGTTGTATAAATGAGCT
CTTAGAAAAAGGAGAAGTGGATAAGGTTTTGCACATTCTCAAAACATTTA
GTGTTCAAGGGAGATGTCCAAAAGAGGAACCAATCCTGGTTGCTTTGGTG
CAATGTTGTTATTTCCAAAATGCTGAGATCCGTAAGAAGGCTTATGATTT
AGTTAGTCCAATTTGTAATATACCAACAAAGCTGTTTAGATTCATTGAGC
TTTGTCAGCAAAACGTCAATCAGGAAAGAACAGCTAAGAAGCATTTAACA
GAATTACCAAAAGAACTCAAGAAGAATCCTCTAAAGCAGAATCCATTAAA
AAGGAAAAAAGAACCTATGGAATCAGAAGAATGCATAGAAGAAGCACCTG
ATTCAAAAAAAGCCAAAAAGCAGAAGAAGAAAAATAGCCCTTTCAAATCT
TATCACACTGACAAAGCTCGCTCCTCAGGCTGGGGGCGCATGCGTAGGAG
AGGGATATCTAGTTTTTATTGTGATAAGAATAAAAGTGCTGAACGGTTGC
TGTATTTGTTGACAAAGTTTAAAAACCGAAACAATTGGAATCATCGGCAA
GTTCTTGGTTATGCTCATCCAAAGATATCTAAAGATGATGATGAACAAGA
TGGCAAGAATTTGGTCCTGGCGTACTGCACCAGAGGCGTGGAAGGTTTTC
AGAAAAAGCTAAACGAAATCAAGAGAAGATCAGCAAATTGTTTGCCACAG
AATGTGTCTCGTATTCAAAACTTTGTTCAAATTCTTGAACAGGTCAGTAA
GCTATCACCAGAAAATGAAGGTGACGAAGAGAAGCTATTGCAATTTTTAC
GTGGTTATGGCATTCGTGAAAGTGCTGACGAGTTTGCAGTTGAAATTGCA
CTCCCTGGAGTCCCCCTCACTCCACCTCCACCATCATCTGGAAAAGAAAA
AGCAAAAAATTCTAAGCAACCATTCCAAGTTGTGCGAGAACATATACCAA
CTGCGTTCCTCAGTTCTGCAAAGGTAAATGTTAGTTAACAATGATAACAC
TGATAGACTTTTATTTTATCACTTTTTAGATATGCCACAGTTATCATAAT
AATTAAGAGATTATTTTAGATTGTAACTTTAAAATTAAGATTAATTTAAT
ATTTTAGATTCCACCTAAAATGATAAATATTGAGTGAGTCATCCATTCAT
TTTTGTTGTTCTCTTAGGTTTGGGAAGCATTGTTGCAAGACATGCCAATG
ACAGCTATGCTGCGAAACTTGGGGAAAATGACTTCCCTTGGTTTGTTTCA
GAAGCCCGAAAACTTGAAAATTGTATTGGACGCTTTAGGTGATACAAATC
GTCTTCAGAAAGCAAGAATTCATCCCATTAAGGTTGGAGTCAATTTATCT
TACCTTTCCACTTAGCAGTTGATTACAATCAAGTCAGCTGATTCAGTTAT
TATTTTTGTGTCCATTTTTATGATTCTCATTGTAAGTTCTTCTTACATTA
CATCTCTTCGTAATGCTAAACAACATTTCTTCACTTTCAGCTTTTGATTG
GGATGAAAGCGTATGAAAATGGTGCTTCATTAAGTATGATGAGTTCTGTC
ACGAAGACAAACACAACAACATGGGAAGCAAACCAAGAAATTTTGAAAAT
CTTGGATAAAGCCTTCTATAAAAGCTTCAAGGTAATAAGATTGTTTTTTC
TTTCAATGCTGATGTTATGGTGTCAGAATGCTGTGATATAGATTGAAATT
TTCAAACATGAAAAGCAAAAACTTCCTGAAATTTTAAAAATCTATGTCTG
CTATTATAAGTGATATCTGCTAATTTTCTCCTTTCAGCAACCAGAAACGC
AAGATGCATTTAGAACAGGGAAACGGTTTATGTTGGCATTGGATGTCAGT
GGTTCAATGACATGTGGTGGCTGTAATGGTTGTGAACAGCTCACCCCCTC
CATAGCTGCCACCGCACTCTCTATGGTCACATGGAATATAGAAGAGCACG
TGGAAATGGTGGCCTTTGGTGGTCGTTTGGAGCGATTGGAAGATCATGGT
TTACGCAAAGATTTGACCATCAATGATGCTTGGAGGAAGATGAGTCGGGT
ACTGGTTATCATATTTCAGAGAATATTCTTAAATTCGTTCCAATCGTCTA
TTTTACAAGACCTTTCCAACTCTAAAGTAGAGAAAGAATTCAAGTCTTCT
GGGCTATTGAAAAAAAAAACTTTTTGGACCCATCTTTTTTACATTCAACA
AATGCTCCAGAAATTTTTTATGTTGCGTTGTTTAATTGATTCGATATTGT
TTTGTTTCAGATCAACTTTGGTTCAACAGATTGTGCGTTACCAATGAATT
ATGCGATAGACCGTAATCTTGATATTGACGTCTTCATTGTTTACACCGAT
TCCGACACCAATTCATATAATCATCCTCACAAAGCATTGCAAAGATATCG
CGAAAAGATGGGTAAACCTAACGCTAAACTCATCGTGATCGCCTTGACAT
CCAATGGGTTTTCTATCGCCGATCCTAACGACCGCCACATGCTGGATGTT
GTTGGCTTTGATCCAGCTGTCCCTGAGATGATCTGCAATTTTGTTAACGA
CAGTTATTGAGCATACCACTCATAACATTGGAGTCTTTCTCGGTGGCTTG
AGTGATCTCAGTACCACTGGACTCTTTTTTGAAATCGAAAGCTGTACCAA
ACTATGGGCTCATTAACCTTGACAGTTTAGGCATTCTTACCTGAGTTGTG
CGGGATTCGATTGAGAAGCATAAGAATCTATAAAAAGAGTCATAAGGCAG
GGAACAAACAATGATATTTCTTGTATAGAAGTAGTTTACATAGAATGCTA
CACGTTGAGGAGCTGGAAACGAGTGTTGCATTCTTTCCAAAATTGACGTC
ACTTCAATAAACAATGAAATTTCATATACTGTACATACATGCTTGCATGG
AATCATTTAATTAAAGTTTTATATTTCATCTTATTTTATTTTAAACAAAC
TATAACATCATTTTAGTTTTTTACCAATTTAATTTCTTAAAATATTGCAT
TGAGTTTGAAGGTCTTCTTTCAAAATTTAGTCAATATATTCTCAACTTCA
GTTGAGCTACAATCTGACAATGTCTGTGTGTCTGTGTGTCTGTCTGTCAC
AAAAACTTTAGGGCAGCCTGGAGACTTCAAAAATGGTCGGATTTGTCTGA
AATTTGGCATACTTGTTCCTTGGGTGAATATATGGGGGTGTTTTTTTCTT
TTTTCAAAAATTTTGATTTTTGGGGCCTGGGAACGAATTTTTCGTCAAAA
CGAGGCTAAAACTTTGGGACAGCCTGGAGACTTCAAAAATTGTTCAATTT
GGCTGAAAGTTTGCACACTTGTTCCTTGGGTGAATATCTGATGGCGTTTC
TTTCATTTTTCAAAAATTTTGATTTTTGGGGCCTGGGGACGAGTTTTTCG
CAAAAACGAGGCTAAAACTTTGGGGCAGCCTGGAGACTTCAAAAATGGTC
GGATTTGTCTGAAATTTTGCACACTTGTACCCTGGGTCAATATCTGGAAG
CATTTATTTTCATTTTTCAAAAATCTTGATTTTTGGGGCCTGGGGAAGAG
TTTTCCGCCAAAACGAGGCTAAAACTTTAGAGCAGAGTCTACATGCCTCA
AAAATGGTTGGATTTGGCTGAAATTTGGCACACTTGTTCCTTGGGTGAAT
ATCTGGGGGTCTACGATTGGGCCTATGAATAATTTGAAGACACTGAAGTT
GAGCCCAGTGCGTTGCGCACGTTCGACTATATTATACACAACTTTATATA
TTACTTTTATTGTGATTCGATTTCTTTCAAAAATCAATTTCTTTTGTAAA
TAACCGTCATCAATATTGATATTGTTTTTGTTTGTGAACTATTTTTATAA
TCTTTGAAATAATATATCAAAACATTTTGTTTTTCCTCTGCTCTGTTGTC
CTGATTTCATTGCTTTTTTAGATGTGCTTTGTTAGTTTCTTTAAAAGAGT
ATCTTTCTTATTTACCTAATATCTATCATTTCTTTTATTTCCACAGAAAA
AAAAACAAAAGATAAATAAATAAACAAAAACACATTGACGGCCACCCTTA
GGGGTGAAGAACCACAACTACTATGGATCCATTCAAAAAACTTGCCCTTT
TGAAGGCCAAAATGACCGGCATGAGTAGGGCCCAGATTGCGGAAGCCATC
CGAAACATGACCCTGGGAATAAACCCAACAGAACAAGAGCCAGACCTTAC
TACACCACAAAATCAACCTTTGCAAGGACAGTCACAAAACGCTGCAGGTG
GTTTTTCCTACACTATAGATAATATAACCAGACTGAAAAGATATCTGATC
TTAGGTTCAGATAAAGCAAAATACAAGGGTGGCTCTCAAGCAGAAAATAT
TCAAAATATTCCAGTTGTTGAAGAACTTTTAAAGGAGGGTAAAGGAAAGG
AGGTGATTGATTTGATCGTTCAGTTTGCTCGTGAAGCACGTATCTCAAAA
GAGGAGAACATTTTGATGGTATTACGTGATTGTATGATGTATCAGGGAGA
TGCCATGTATGAAGATAGGACCATACAACGAGCTGCTTATGACAGTATCG
TCAAAATCTGTAATATCCCAACCAAGCTTTTCCGATTGATGGAGCTTTGT
AAACCATGTTATCAAAATAATTGGAAGCCTTTAACCAAGCCAGTCAGTAA
GACGCAACTTCGGAAGAAAGCAAAACAAGAGGCAAAACAAGCAGCTCAAC
AGCAGAATCAAAGGCCTTCCACCTCCACCGAAATCCCAGCTGCTCAACCA
CCGTCAGCAAAAGTGCCAGTTGAAACATGTGAAATTGTTGAAGAGGGTGA
ACCTCCAAAGAAAAAGAAAAAGAAGATGAAGAAGAAGAAAAAACCAAAGG
AACCCAAACCTCAAACAACGCAAAAATTCAAAAAATCTTCAAGTTGGGGA
CGTGCTAGACGGCGTGGTGTCGGCAATTTTTACACCGATTCAAGTAAAGA
TGCCAATCGATTGTTATTGTTGATGACGAAGTACAAACAACGTCATAATT
GGAACCATGTTCAAACGTTGGGTTATTGTCATCCAAAAATGACGGGAGAC
GAGGAACAAGTTAAAAACATCGTCCTCCAGTATTGCACACGTGGCAAAGA
AAAGTTGGACAAATATCTGGTCAAGAAAAAAATCGATGGGGTAACGATAT
TTCATTCTTTTCTATTTCATTTTTTAAAAATTTGTAAGAAGAGATGTGAT
AATTTCATCACTGTCTGTGTAGTGTAGGGAAAAGTTTTCCCAAATCTCCA
ATTCTTTACTTACACAACATTTAAACAAAAGAAAGAACAACCCCATTTTC
AGAGCTGCGCGAGCACAAATTTTGAGAAATTCTTTTGTTTGTTATACTTT
TTCCGCAAAGAGGCTTCTTATTAAAAAAGAAGATCCTTAATATTTCCACT
ACCGTCCCTGCGCACTTCCGGGAGGTAATCGAAAAAGGTTGAATCCAAAT
GCAGCACCATAAAAGCTTTTCGGTACCATACCGGATCCAAGTTTAGTAAA
TATCATGAAATTTTTCACATTGATAACAAGGTTTTCTTAATTTTTGGACT
TTCTTTCAAGAATCAACCAATGGACCCAATCACATCTCAAATATTACAAC
ACATAAAAGTTCTTGAGGAAGTCAAGAACCTGAAACCGGATGTCCCGGCC
GATGTGGAGAGATTGCTGCAATTGTTGCACCAATACGGTATTCGGGAGGT
GCCACAAGAATTTGAGGTTGACGCTGCAGGTCAAATGGTACAAGTGGAAA
ACACTCAACGTAAAAAATGTTCTTTTCAACTGACCAGGGAGCATTTACCA
AATGGCTTCCAAAAATTGAAGGAGGTAATAGTTGATCATTTAAACAAAAC
TTAAACCGCTAATATACGGTTTTTTTCTATCCCGATCAGCCCAAATAGAT
TTTCTGTTGATCGAAAGGTGATCTTTGAAAGCTTGACTAAAAGCTCTTTT
AATCGTAATTATATACAATTTCACTCTACTCAACAATACCAATCTTTCTC
CATTGAAATTTTTAGGTTTGGGTGGCTCTACTTCAAGACATGCCCATGAC
AGCCATGATCAGGAATCTCGGCAAAATGACCAGCCTTGGGCTCTTTGATG
AATCAGCAAACAGAGAAATTGTCAAGAAGGTTTTAGGGGATGGCTCTATT
TTGAACAAAGCAAGAATTCACCCAGTCAAGGTTTGCTATTTATTTAGAGT
GATGGCCAAGGCGCATAAACCAGGGGCTCCCTGCATCTGTCGATAGTTAT
TTTTCAAGCCCTTTTAGTTTTGGCGCACGTTTTCTACACGACAATAATAG
CTGCGTGTAAATTTATGGAAACAAGGCATATCTTTTTGCTTATTGGTGAT
ATTTAACGTTAAATTTCGACAGTTTTACACTGCACCTTACATGAATGATC
AAATACACGTTTTTTTTTAAGAAACTAGTTCTACCAAGCAGCCTCAATGT
TTCTTAAGAAATTTGCCATTTGAGCTTTAAAAATGTTTCTTACATGTTTC
AAAATTTTTTGACATAATCAGCTTCATGGAAGGCTGGATTGGAAGGATTT
AAAAAAAAATGAATTAAAAAATGTTATTTTCTCATTCTCAGCCTCAGCAT
GTTTCTTAGTTTTTAGGCATTCTGAGCCTCATGTTTCTTAAAAGTGTGTT
TCTTAAAAAAAAACCGTGTACCAACTATATATCCATGCAGGGAAAATTAG
AAAAGCAATGCACCGTGATTGAACCTGTAAGTAATGCACCGTGATTGAAC
CTTGTTACAGATTCTGTTAGCATCAAAGATGTATGAGCAAGGCAATGGTG
ATCAAGGGCAAAGCCATCAACAACAACAAAAAAATCAAACAATGAGTCAA
TCAACCAAAGAACCACTTACTTGGAGACCAAACGCTGAAATCTCCAAAGC
TCTCAATGATGCTTTCTACTTAAGTTTCAGAGTAAGCTCTATTCTAGATA
TGCAGGCATGGTTAACATAGTCAAGCATTCTGCTATAACGAATTCCTATG
GCTCGTGCGCTAGAGTTTCATTTATCATTTGAACTTTTATATACTTGCTA
AAATTGATTAGTTTTCTGGAGAATCTCTTTCATTATTTCCATAGCAACCC
GGCAAGAATTCTTCATTCCGTACGGACAAAAAGTTCATGTTAAATCTAGA
TGTTAGTGACTCTATGGATTGGGGTAACTGTGTAGGGTGTGATTTCCTGA
CGCCCGCTGCCGCCTCTTTCGCCCTGGCCATGATTACGATGAATGTTGAG
CCACATTGTAGTGTGTTCGCTTTCGGGGGAACGCTTCAAAATATCGATCA
TTTATTGAAGAAGGATATGACCATCCTTGAAGCCATTCAAGTGGGACGCT
CTGTAAGTCGACTTCACTATCAAGAAATCTTGTTTTAAATATTCTCATTT
CTTTATTTCTTCGAACTTGGGCCTCACATAAAACAGAACATCATTCTTAG
AACGTCAAAAATGTCTAATTCCGAATTCTATTTGAATCTTTCTATAGTTC
GAACTAATTCCCAGTCCCCATCAGCATCAATTTTCAATATTCCCTTTCGA
CTTTGAATGAGCGAGACTAAAATATATACATTATCGGCCAAAACTTAGCC
GGCCTCAATTATTAGTCGGCCCTAATTTTAGTCACATCATCAAAATTTAG
TCACTTAGGGTCGACTAAATTTTGGCCGATAAGGTATAAAAAATCGACTT
CCATGTCAATAGCTTTATTCCGCAATTTTCTGTGCTTTCTCTTTTTATCA
GTTATGTCATCATGCCTCATTAAACTTAACTTAGGACATCCGTATTATCT
TTCAGCTCAATTTCGGTGCAACAGACTGTGCTCTACCAATGGTGCACGCC
ACGCAGAACAGGCTGGATGTGGACGTTTTCATCGTTTACACTGACTCCGA
AACTTGGATTGGAAAAGTTCATCCTTCTGAAGCTTTAAAGAATTATCGGC
AAAAGATGAACAAACCGGATGCCAAACTCATCGTCATGGCAATGAAGGTT
TGTCTGTTCTCCACACGGCCCTGTAATGTAGTCTGTGCCTCTAAAGAATC
CTGCATTGTAACACACATGCTTAATTTGTCGNTTTCACGGCCCTGTAATG
TAGTCTGTGCCTCTAAAGAATCCTCCATTGTAACACGCATGCTTAATTTG
TCGTTCTTTAAACCATATATAGTTAATTCCCGTGATAAACAAAGAGGAAT
GAATCTGTAGGGGTGGTACATGTCACTTTCGGTCGGGGCTGTGGACGGCC
AAATATGTCGATTTTTATGAAATTTGTCGTTTTTTTGTCTATTTTTAGTA
ATGCAGGATTCTTTAGATAAACCCCTCATGATATTATGATATCTCGTTAT
AAAAAGTGATGGCATCAATTCATTTCAGTCGGTTTCAATCCTGTAAAACC
TTAAAAACACACGGTGAATAGGTCATCAACTTCTAGTTATTAGAATTCTG
TAGATAAACCCTTTTCTTTTTCATTGTATTCGAACTTTTTGTATGACTTC
CCAAGGGAATGTTGTGGTGCTTATAAAGACTTTTTTACAGGTTTTGTAAG
GGATTGTTGTGATGCATATAAAGACTTTTTTACAGGTTTTGTACGGGATT
GTTGTGGTGAATATAAAGACTTTTTTACAGGTTTTGTACGGGAATGATGT
GATGCATATTAAAACTTTTTTACAGGTTTTGTACGGGATTGTTTTGGTGA
ATATAAAGACTTTTTTACAGGTTTTGTACGGGATTGTTTTGGTGAATATA
AAGACTTTTTTACAGGTTTTGTACGGGAATGTTGTGGTGAATATAAAGAG
TTTTTTACAGGTTTTGTACGGGAATGTTGTGATGCATATAAAGACTTTTT
TACAGGTTTTGTACGGGATTGTTGATGGTGAATAAAAAGACTTTTTTACA
GGTTTTGTACGGGATTGTTGTGGTGAATATGAAGACTTTTTTACAGGTTT
TGTACGGGATTGTTGTGGTGAATATAAAGAGTTTTTTACAGGTTTTGTAC
GGGATTGTTGTGATGCATATAAAGACTTTTTTACAGGTTTTGTACGGGAT
TGTTGTGGTGCATATAAAAACTTTTTACAGGTTTTGTACGGGAATGATGT
GATGCATATTAAAACTTTTTTACCTGTTTTTACAGGTTTTGTACGGGGTT
GTTGTGGTGAATATAAAGACTTTTTTACAGGTTTTGTACGGGATTGTTGT
GATGTATATAAAGAATATTTTACAGATTTTGTACGGGATTGTTGTGCAGA
ATATAAAGACCTTTTTACAGGTTTAGTACGGTAATGTTGTAGTGAATATA
AAGACCTTTTTTACAGGTTTTATACGGGATTGTTGTGGTGCATATATATT
TTATTTTATTGGACCTACCCCAGTGGAGGTCCTATAAATTAACCGTTGTA
TGTTCGTTCGTTCGTTACCAGCTTTTCTCGAGATTGGCTCATTAGTTTTT
TCTGATTTTTTGCACAAAGATGCATAACTATAAACCCTCGAATGTGACGG
AGCCCGATTTTCGAAAAAAAAAATTTTTAGGCAAATTTGGGCCAAAAAAC
GACTAAAAACAGGTTTTTTGGACTTTGTGAAAAATTGGATCATTAATTTT
TTCTGATTTTTTGTAGGATAGTAGGGTATCATCATAGGTGAAAGATGGCT
CAAGCAGATTTTTGCAAAAAAAATTTATTGGCTTAAAAAACGCATGTTTA
TCTATAAGAATCAATATTAATAAGCATACATCAATGTTCTTAGTCAAATT
ACTAAATTTTATTATTTTTTTACCTTTGGTTGCTTGGCGTGTTTTTGTAG
AAAAACTGGCCAAATTCGATATTTTTTTATAAGCACATTATCAATTACTT
AGGTATTAGCTTTTCTCGAGATTGCCTGTTTCATTCTTTATTATTTTTGC
ACAAAGATGCGTAACTATAAACCCTCGAATGTGACGGAGCCCAATTTTCG
AAAAGAAATGTTTTTGGGCAAATTTTGGCCAAAAAACGGGTTTTTTGGAC
TTTAAAAAATTGGATCATTAATTTTTTCAAATTTTTTTGAATGAAAATAG
GTAAAAGATGGCTCAAGCAGATTTTTGTAAAAACGAATTTTTTTAGCTCG
AAAAACGCATCGTTATCTATAAGAATCACTATTAATAAGCATACATCAAT
GTTCTTAGTCAAATTACTCAATATTTTGATGAGATCGATGTGTTTTTTTG
CTCACGAAGTCTTGAATATGAAAGAATATTTATAGAGCATGAAATTTTGG
TTTCTAAACGGTTTTTTATAAGAAACAAACGATTAATTNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTTGTTTTATTTTATTTTTA
TTTTCCAATTTATTTAACGTTGGGCTGACATCGTTATAATTAAAAATACT
AATTAATACCAACTATATAGAATACAATATAGTATAGAATAATAAATTTA
AAATTTTTTTTTATGTGTATATTTTACAATGACAAATATTTGTAAGATTT
AGTTTTTCTTTCAGACTTTTTTTTTACAGTTTTTGTACGGGATTGTTGTG
GTGAATATAAATACCTTTTTTACAGGTTTTGTACGGGAATGTTGTGGTGC
ATATAAAAACTTTTTTTACAGGCTTTGTACGGGATTGTTGTGGTGAATAT
AAAAACCTTTTTTACAGGTTTTGTACGGGATGGTTGTGGTGAATATAAAG
ACCTTTTTTACAGGTTTTTGTACGGGATTGTTGTGGTGAATATAAAGACT
TTTTTACAGGTTTTGTACGGGAATGTTGTGGTGCATATAAAGACCTTTTT
TACAGGTTTTTGTACGGGATTGTTGTGGTGAATATAAAAACCTTTTTTAC
AGGTTTTGTACGGGATGGTTGTGGTGAATATAAAGACCTTTTTTACAGGT
TTTGTACGGGATGGTTGTGGTGAATATAAAGACCTTTTTTACAGGTTTTG
TACGGGATTGTTGTGGTGCATATAAAAACTTTTTACAGGTTTTGTACGGG
AATGATGTGATGCATATTAAAACTTTTTTACCTGTTTTTACAGGTTTTGT
ACGGGATTGTTGTGGTGAATATAAAGACTTTTTTACAGGTTTTGTACGGG
ATTGTTGTGGTGCATAGAAAGACTTTTTTTACAGGTTTTGTACGGGAATG
TTGTGATGCATATAAAGACTTTTTTACAGGTTTTGTACGGGAATGTTGTG
GTGAATATAAAGACTTTTTTACAGGTTTTGTACGGGAATGTTGTGGTGAA
TATTTATATTGTATCTGTGTGAAATCAAGTGCGTATTGTATCTGTATTGG
TGAATATAAAGACTTTTTTCTTTTCTCCATTTTTCAAGGTGAATGATTTC
ACGATCGCCGATCGACTCGATCGCGGTATGTTTGACATTTGCGGATTCGA
TTCTAACGTACCTGATATGATCTGCGAGATCGCCAGAGGAAACATTTCTT
AAAATCACCAAACAAAGAGAAATGAAATCTAAACTTTTCTGGTTAGCCTT
CGTTTACATGGCTCTAGCTGCTTGTGAATTTGGTGCTGGTGGTCTTAACA
TTCTATCAGGAAAAACGGAATTGATACATTATCAACCAGCAAAGAGAACG
ACCAACCTTGACTTATTGCAGGGTTCTTGGATTACTGGACAGGTGGGTCA
AGCAGGTGATACCAGTTCTGTTTTTCACTAATTGTGAAGATTCGCAGATT
AGCACCCGTGTTTTTCAATAGCCTGTTTTTTTTTTGGGGGGGGGGGGTTG
GAAATTGTAATTACGAAATCCCAAAAATAAGGTGAATATAGGCTAAAATC
AGGCTATTTAGAGCAGAATAGAATAAGGGTCCTTTTCTTTTAAAGTTGAA
AACAAAAATTAATAAATGGGGGGTTCTAATAAGGTCCGTGGGGGGGGGGG
GGCTGGAAAATTTTTCGAAAAATTAACAAGCGGGGCCCGTTTGTTTGGAA
CCTAAGAGTACTTGGAGTTGTGCGGGATTCGATTGAGAAGCATAAATTAA
GAATCAATAAAGAGAGTCATAAGGCAGGGAACAATGATATTGATATTGAT
GTATTTCTTGTATAGAAGCAGTTTACATAGAATGCTACACGTTGAGGAGC
TGGAAACCAGTGTTTCATTCTTTTCCAATTTGACTTTACTTCAATAAACG
ATGAAATTTCATATACTGTACATACATGCAAGGAATCATTTCAAGTTTTA
TATTTAATTTAATTTTATTTTATTTTATTGTAAACAAAC

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_044130	XLOC_044130	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_58	supercontig	scaffold_58:1028326..1044664 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.8186	1.47532	0.0717865	0.0488406	17.7358	15.1029	27.165	32.9807	19.021	32.3022	14.4505	8.15307	29.9952	20.9919	17.0628	19.2893	17.9994	11.9211	16.9804	28.0505	11.0118	11.6955	8.07243	6.79767	13.3217	14.1554	12.5823	13.6479	5.10411	3.34001

Blast

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BLAST of TCONS_00071018 vs. Swiss-Prot (Human)
Match: RO60 (60 kDa SS-A/Ro ribonucleoprotein OS=Homo sapiens GN=TROVE2 PE=1 SV=2)

HSP 1 Score: 236.113 bits (601), Expect = 4.103e-67
Identity = 166/454 (36.56%), Postives = 235/454 (51.76%), Query Frame = 3

Query: 1107 KSAERLLYLLTKFKNRNNWNHRQVLGYAHPKISKDDDEQDGKNLVLAYCTRGVEGFQKKLNEIKRRSANCLPQNVSRIQNFVQILEQVSKLSPENEGDEEKLLQFLRGY-GIRESADEFAVEIAXXXXXXXXXXXXXXKEKAKNSKQPFQVVREHIPTAFLSSAKVWEALLQDMPMTAMLRNLGKMTSLGLFQKPEN--LKIVLDALGDTNRLQKARIHPIKLLIGMKAYENGASLSMMSSVTKTNTTTWEANQEILKILDKAFYKSFKQPETQDAFRTGKRFMLALDVSGSMTCGGCNGCEQLTPSIAATALSMVTWNIEEHVEMVAFGGRLERLEDHGLRKDLTINDAWRKMSRINFGSTDCALPMNYAIDRNLDIDVFIVYTDSDTNSYN-HPHKALQRYREKMGKPNAKLIVIALTSNGFSIADPNDRHMLDVVGFDPAVPEMICNFVND 2456
            K    L   +TK+K RN W+H+ +L  +H K S      +G  +V  Y T+G     K+++E+ +  A                      LS E E    KLL++L     ++ + DE  V                      +  +  ++VREH+ T  L S +VW+ALLQ+MP+TA+LRNLGKMT+  + + P N  + +V + L +   L+KARIHP  +LI ++ Y+ G  L             W  ++EILK LD AFYK+FK  E      TGKRF+LA+DVS SM          L  S  A A+ MV    E+   +VAF    + +    +  D+T+      MS+I  G TDC+LPM +A   N   DVFIV+TD++T +   HP  AL+ YR+KM  P AKLIV  +TSNGF+IADP+DR MLD+ GFD    ++I NF  D
Sbjct:  159 KGGMALALAVTKYKQRNGWSHKDLLRLSHLKPS-----SEGLAIVTKYITKG----WKEVHELYKEKA----------------------LSVETE----KLLKYLEAVEKVKRTRDELEV---------------------IHLIEEHRLVREHLLTNHLKSKEVWKALLQEMPLTALLRNLGKMTANSVLE-PGNSEVSLVCEKLCNEKLLKKARIHPFHILIALETYKTGHGLR--------GKLKWRPDEEILKALDAAFYKTFKTVEP-----TGKRFLLAVDVSASMNQRVLGSI--LNASTVAAAMCMVVTRTEKDSYVVAFS---DEMVPCPVTTDMTLQQVLMAMSQIPAGGTDCSLPMIWAQKTNTPADVFIVFTDNETFAGGVHPAIALREYRKKMDIP-AKLIVCGMTSNGFTIADPDDRGMLDMCGFDTGALDVIRNFTLD 536

HSP 2 Score: 92.4337 bits (228), Expect = 2.916e-19
Identity = 44/112 (39.29%), Postives = 65/112 (58.04%), Query Frame = 3

Query:  492 QSGFSFQIELIKRLERFLILGTEGNTYYASEKDRTYENISCINELLEKGEVDKVLHILKTFSVQGRCPKEEPILVALVQCCYFQNAEIRKKAYDLVSPICNIPTKLFRFIEL 827
            Q G+ +Q+  + RL RFL  G+EG TYY  E+    EN   +  L+E G   +V+  +K+FS +GR  K+EP+L AL  C    +   ++ A+  VS +C IPT LF FI+ 
Sbjct:   20 QDGYVWQVTDMNRLHRFLCFGSEGGTYYIKEQKLGLENAEALIRLIEDGRGCEVIQEIKSFSQEGRTTKQEPMLFALAICSQCSDISTKQAAFKAVSEVCRIPTHLFTFIQF 131

The following BLAST results are available for this feature:

BLAST of TCONS_00071018 vs. Swiss-Prot (Human)

BLAST of TCONS_00071018 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
RO60	4.103e-67	36.56	60 kDa SS-A/Ro ribonucleoprotein OS=Homo sapiens G...	[more]

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TCONS_00071018 (transcript) - C. hemisphaerica