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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00071040 ID=TCONS_00071040|Name=TCONS_00071040|organism=Clytia hemisphaerica|type=transcript|length=3256bp
aaaaaaccGAAAATAATATTTAGAAGGAATATTTTGATTACAGCTTTCAG
ATGAAGCATATATCGAAGAGCGGGATGTTTGCTGTCTTTCTGCGGGTTTT
CACTGGTCTCTGTTTACTAGCCAGCCTTTTTCTTGGAGTAATATCCGTAG
CTAGTCATCGCTGGATCGAAAGATATGCCAAGAATGGAACACAGTTTTAC
CATATGGGattatggaaattttgtgatatGAAGCAATGTCATGTTTCAAT
TGAAACTGGCTTCATCTTGAACAACAACTTAGGAAataTGTTGAAGTACG
TTCGAATTTTGTTCTGCGTTGGTGTTTTCGCGAATTTGGTAGCTTTAAGT
TATTTCATGTTCGATTGTTTGATTCTGATGAAGAAAGGACACCTTATGGT
TATCAACATGTGCATCATACTTTCCGGCGTATTGAAAGGTGTTGGGATGA
TTTTGTTCACGGAACATTTCAAAGTGAACAACTTCCAATGGGGATGGAGT
CACACTGTCGGGTGGAGTTCAGCCATACTCCTGGCGGTGGCATTATTGAC
AAGTTTTTATTACATGCGAAAGTATGGATGGACGGAAGAAGACCGAAGGA
AAAAGCAGAAAAGTTCATCCTACAAATTTGACAAAGTCGACTTTGATGGA
TATGACTAATGAAACGAGAGACAAGATGAAAAAAGATTTGGGGTTACAAA
AGCAAATGAACAGGCACAGTTTTCCCTTGGAAGGCAACGGGTCATTTCTC
GAGATTTCTAGTTTCATTATTTTcgttttgacgtcaaaaattcgaaagaa
gacgttacaatggcggaatttctaaaaataacgTCAATAAAAATCGCTTg
tcaaaaatgaaaacgaaATAGTCTATCAAGAAGTCTAGAGTGAATGAAGA
AGACAATTTCTGAATGATTCAAAACgataagaagaaaatcaactcaAATA
CCTTATGCAGCTTGACAAGTTTGTGAACGTGATGGGTATTAACGTAATAC
AAGTTATCGATCAGATACAAAGTGATAAAAATGGAGGAGACAAGAAGTTC
ATCGACTCTGAACGACTAATCGACAAAAACTGGTTCAAGAAATTAGAGAG
AAGAAGATTGAAAGAGAAACTTGCTGCCGAGAAAGAAGAAATTATTATAC
TGTCCGATCAGAAACTTTCCATCAGAAAGAATGAGACAAATCACACATAC
AGGGTGTCCTCTTCACTTAGCAAACGCCGAGAAGAAGATATTATTCCGAC
AAACTTAATTTttccaatgaaaatgaaagtagcTGAATTTCCGAGCATCG
AGACAAAGGAACAAGGAACTGAGAAAGATAAATCTATACAAAGTCTACGT
AGTCGTGTCTGGCAACGGCCGAGGACTATGAAATGGTGTAagccaaaaga
ttttttatcCAATAAAGTGAAAACATACTCAGAAGCTTGCGAACTAgtca
aacaaaatgaaaacgGTGTTATTGTGAGAGTGAAAAGGACTTCTCCTGGA
GAGCATGATGAATTTTTCAACCTTGATTCTGGCGATAATTCAGTCGACTT
TATTACTTTCATACCTACTTAAATCTGATTTATGTAACTACTGTAgctat
ataaatatttttaaaacaataaaaaaagttttaaaattggccCCATTTCC
TCTGGGAATTTCTGACGAGTAAAGGCAGCAATCATACAACATGATAATAC
AAGCAACGATATGATTATCGATCACTGATCAAAATGATTATTGTTAAACA
CTTAGTATGTTTTGGGTGGTTGATGAACCTGAAAGAACTTAAGTAACTCT
TATCGTAGATTAATTTTCAAATGTGTTTGATGAATTTCTTGAGGAAGACT
AATCTGTGAAAGATTACCCCGTTAAAGGTTCATTACTTTACCTACGTAAA
ATGAATACTTTTCAGGGAAACCTTTTCGCCTCTTTTTGGAGAATTAGTGA
TATGAGAGAAGCgtttgaaaatgagaacataaactgaaaaatgaaagagG
TAAGATTCTTTCACCAAAAATCTTATTTGCAATTAAAATCTAATCGCgag
aaaattttaaatactgtaattaaaaaaaatcgattTAAAAAATGTTAGGA
ATTATAAAAATTCTCTAGCAGACTTACCAACCACCCATGGTATTCATTCA
CtcactcattcattcattcattcaataaTAATTCTAAATCTTCAAGTTCA
TCTTGAAATTGTTCTCGTTTActtaatttttcaagttgttCTTTTTCAAG
AGTCTCTCCTTTATCCTGTCTCTCTTTGATTTGATCACATTGTTTTAGCT
TCTTTCGTAAACCTTTGATTTTCTTCTGAATCTCTGCATTCTTTTCAtca
tcatttccaccaaaacttttattgccaTCGTTCTTATTCAAATCAACTTT
AGCCATCTCCTTTGTTGCCATGGCTACCGAAGGTACTGTTGATTCTTCCT
CGGTTTTTTCTTTCCGTTTTTGTTTCCTTCGTTCATTTTTCTTGGCGTTT
TTACTCATGGGTTTATTGACAACAGTTTGCGGTTGGGTGGGTAGCCCAGG
TGTGAACGCCGCTTGGTTAGCTTGGAATCTTTTCCCTTTACTTTCGTACT
TTTCAGCTTCGTCAGGAGGGACGTACCCCGCCTTCACTTTGCGCTCTTTA
CGCCATGTTCCGTCAGGTCGGCGACTTGCCGGTATAACGGTATCACCACC
TGACGCCATTAAaagatttgatatttttttgctttttttcactGAAACAA
GAACAAAGAATTTGTAATTTGTGATATTACCACATTTTACCCGTTACCTT
TCTAATTCAAATGCTTAACTCGATAACACAATGGCAAAGATATCGATTTA
CAtatatttcagaaattttatttacaaatttacatATATAACATACAACG
ATTACATAGATTTCGGGACGAGTGACTGGAGATTTCTGAGTTTATGATCc
tgaaatgaaaagaaaaaaaaattgaaagtcaaaaacatttcaagCGAAAT
TTAAGGTTGCAACGAGCAGCAACGTGATTAACAAATAAAGAAACCACTTA
CTTCGTTGACAGTACCTCTATTAATTACTCAAAGGAACCAAGTCCAGAAT
CTGTTTCCAATCTTAACAGACGAAACCCAGGTTGCAATGGAGTGTATGTG
GTACTATCATCTCCCATTGTTCTTACACAAGATCGCCTCGAAGGATTTTT
CCAAGAAATCTTTGTACATTGTCAACCATAGTTTCAGGCGGTTCACAATC
GACGCC Run BLAST on NCBI protein sequence of TCONS_00071040-protein >TCONS_00071040-protein ID=TCONS_00071040-protein|Name=TCONS_00071040-protein|organism=Clytia hemisphaerica|type=polypeptide|length=205bp
MQLDKFVNVMGINVIQVIDQIQSDKNGGDKKFIDSERLIDKNWFKKLERR
RLKEKLAAEKEEIIILSDQKLSIRKNETNHTYRVSSSLSKRREEDIIPTN
LIFPMKMKVAEFPSIETKEQGTEKDKSIQSLRSRVWQRPRTMKWCKPKDF
LSNKVKTYSEACELVKQNENGVIVRVKRTSPGEHDEFFNLDSGDNSVDFI
TFIPT Run BLAST on NCBI transcript from alignment at scaffold_58:1201340..1205941- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00071040 ID=TCONS_00071040|Name=TCONS_00071040|organism=Clytia hemisphaerica|type=transcript|length=4602bp|location=Sequence derived from alignment at scaffold_58:1201340..1205941- (Clytia hemisphaerica)
AAAAAACCGAAAATAATATTTAGAAGGAATATTTTGATTACAGCTTTCAG
ATGAAGCATATATCGAAGAGCGGGATGTTTGCTGTCTTTCTGCGGGTTTT
CACTGGTCTCTGTTTACTAGCCAGCCTTTTTCTTGGAGTAATATCCGTAG
CTAGTCATCGCTGGATCGAAAGATATGCCAAGAATGGAACACAGTTTTAC
CATATGGGATTATGGAAATTTTGTGATATGAAGCAATGTCATGTTTCAAT
TGAAACTGGCTTCATCTTGAACAACAACTTAGGAAGTATGAACATTTTTA
GATTTGTGGAAGGGTTTAGAAGAGCCACCCCGCGGCGGTTTGCATGATGG
CGTGATTGGGGCTTTTTTTTTGAGTGATAGCGCATTTAAGATTTTTGCGT
GTTACGTGATAGGGACGATTGAGACTCGATGCGTGATTTGAAGACAAATT
CGGCAATTTTCGTGATCGCGAGGAGAGCAAAATAGCAAGTGAAGGAGAAA
TAAATCGCGAAAAACCAGGCCTATTTTTTATTAGTAGACTCAGTCAAGCC
CTCTTTTTTCGGGCTAGACGCAAAATTTTATTAATGAAGTATTTTTACTT
TTTAGATATGTTGAAGTACGTTCGAATTTTGTTCTGCGTTGGTGTTTTCG
CGAATTTGGTAGCTTTAAGTTATTTCATGTTCGATTGTTTGATTCTGATG
AAGAAAGGACACCTTATGGTTATCAACATGTGCATCATACTTTCCGGTAC
GTTCTTCCCTGGTGCATTTCTTAAGAAAAAAGATTTAAGTCCCCTTGATA
CACGTTTTAAGAAAACTAAGTGAATTGAAAATGTTGAAAAAATGAAAGTC
TTTGATATGCCCAAATTTGATCAGCTTTTATAAAAGGGCGTGTAAAACCA
TTGTTCTCACGTTTGCTCGTATCTCCTCACATTTGCTGAGACAGCAATTT
CTCATTTCCCACGCCATGCTGCGCGAACACAAAATTCGGAAAAACCTTAT
GTTTATTTTGCTTTGTCAGCAAAAGAGGTGCGCCATAAAATTAGCAAAAT
CTTTTATTTTACTTTGAATGTTCGTGGGTTTTCTGGAAGATGTGGTTTTG
CCACACCCTCCAGAAATCTTTGTCCTCAAGGATATTTTGGGAGCGTCTCC
AGGGGAAAACTCGTCTAAATACTGAGATTTTACTTAACTATTAAAGAGGT
TTTAATTCATACCCTGCAGGAGTGAGAAGACGTATTGGATAATAGGGAAA
AGTAAACTTCCTTATTGATATCTGTCTACCCCCTGAAGTCTTACTTACAT
TGTTTGAGCACCCTGGATAACATGATGGGTTGCCGGTGTGTTTTTCCTTT
TTCCTAATTTCCGAATATTTTCTCGTAAAGCAGCGTGCGTACTTTGTAAC
AGGGCTTAACAGGGTAAACCTTTTTTGATAATTCCGTAATTCATATTTTA
TAGAAGAAAGATACATTTCGGATGAGTTCAAACATTCGATCAAATAATAA
AAACGGAAGCATAGTACACTTCAAAATAAAAAGAGATTTAGGAGGTGGTC
TAGGCTGCGCACATCCCGGAATATAGCTTTGTCCATAGATGCAATCCCAA
ATACAAATATTCCGAGTCCGATGTTCTTTCTCTAAAGTTAAACAAGTTAA
ATGNTCTAGGCTGTGCACATCCCGGAATATAGCCTTGTCCATAGATGTAA
TCCCAACTATTCCGAGTCCGAGGTTCTTTCTCTAAAGTTAAACGAGTTAA
ATAAATCTTTGATTTCCTTTAGGCGTATTGAAAGGTGTTGGGATGATTTT
GTTCACGGAACATTTCAAAGTGAACAACTTCCAATGGGGATGGAGTCACA
CTGTCGGGTGGAGTTCAGCCATACTCCTGGCGGTGGCATTATTGACAAGT
TTTTATTACATGCGAAAGTATGGATGGACGGAAGAAGACCGAAGGAAAAA
GCAGAAAAGTTCATCCTACAAATTTGACAAAGTCGACTTTGATGGATATG
ACTAATGAAACGAGAGACAAGATGAAAAAAGATTTGGGGTTACAAAAGCA
AATGAACAGGCACAGTTTTCCCTTGGAAGGCAACGGGTCATTTCTCGAGA
TTTCTAGTTTCATTATTTTCGTTTTGACGTCAAAAATTCGAAAGAAGACG
TTACAATGGCGGAATTTCTAAAAATAACGTCAATAAAAATCGCTTGTCAA
AAATGAAAACGAAATAGTCTATCAAGAAGTCTAGAGTGAATGAAGAAGAC
AATTTCTGAATGATTCAAAACGATAAGAAGAAAATCAACTCAAATACCTT
ATGCAGCTTGACAAGTTTGTGAACGTGATGGGTATTAACGTAATACAAGT
TATCGATCAGATACAAAGTGATAAAAATGGAGGAGACAAGAAGTTCATCG
ACTCTGAACGACTAATCGACAAAAACTGGTTCAAGAAATTAGAGAGAAGA
AGATTGAAAGAGAAACTTGCTGCCGAGAAAGAAGAAATTATTATACTGTC
CGATCAGAAACTTTCCATCAGAAAGAATGAGACAAATCACACATACAGGG
TGTCCTCTTCACTTAGCAAACGCCGAGAAGAAGATATTATTCCGACAAAC
TTAATTTTTCCAATGAAAATGAAAGTAGCTGAATTTCCGAGCATCGAGAC
AAAGGAACAAGGAACTGAGAAAGATAAATCTATACAAAGTCTACGTAGTC
GTGTCTGGCAACGGCCGAGGACTATGAAATGGTGTAAGCCAAAAGATTTT
TTATCCAATAAAGTGAAAACATACTCAGAAGCTTGCGAACTAGTCAAACA
AAATGAAAACGGTGTTATTGTGAGAGTGAAAAGGACTTCTCCTGGAGAGC
ATGATGAATTTTTCAACCTTGATTCTGGCGATAATTCAGTCGACTTTATT
ACTTTCATACCTACTTAAATCTGATTTATGTAACTACTGTAGCTATATAA
ATATTTTTAAAACAATAAAAAAAGTTTTAAAATTGGCCCCATTTCCTCTG
GGAATTTCTGACGAGTAAAGGCAGCAATCATACAACATGATAATACAAGC
AACGATATGATTATCGATCACTGATCAAAATGATTATTGTTAAACACTTA
GTATGTTTTGGGTGGTTGATGAACCTGAAAGAACTTAAGTAACTCTTATC
GTAGATTAATTTTCAAATGTGTTTGATGAATTTCTTGAGGAAGACTAATC
TGTGAAAGATTACCCCGTTAAAGGTTCATTACTTTACCTACGTAAAATGA
ATACTTTTCAGGGAAACCTTTTCGCCTCTTTTTGGAGAATTAGTGATATG
AGAGAAGCGTTTGAAAATGAGAACATAAACTGAAAAATGAAAGAGGTAAG
ATTCTTTCACCAAAAATCTTATTTGCAATTAAAATCTAATCGCGAGAAAA
TTTTAAATACTGTAATTAAAAAAAATCGATTTAAAAAATGTTAGGAATTA
TAAAAATTCTCTAGCAGACTTACCAACCACCCATGGTATTCATTCACTCA
CTCATTCATTCATTCATTCAATAATAATTCTAAATCTTCAAGTTCATCTT
GAAATTGTTCTCGTTTACTTAATTTTTCAAGTTGTTCTTTTTCAAGAGTC
TCTCCTTTATCCTGTCTCTCTTTGATTTGATCACATTGTTTTAGCTTCTT
TCGTAAACCTTTGATTTTCTTCTGAATCTCTGCATTCTTTTCATCATCAT
TTCCACCAAAACTTTTATTGCCATCGTTCTTATTCAAATCAACTTTAGCC
ATCTCCTTTGTTGCCATGGCTACCGAAGGTACTGTTGATTCTTCCTCGGT
TTTTTCTTTCCGTTTTTGTTTCCTTCGTTCATTTTTCTTGGCGTTTTTAC
TCATGGGTTTATTGACAACAGTTTGCGGTTGGGTGGGTAGCCCAGGTGTG
AACGCCGCTTGGTTAGCTTGGAATCTTTTCCCTTTACTTTCGTACTTTTC
AGCTTCGTCAGGAGGGACGTACCCCGCCTTCACTTTGCGCTCTTTACGCC
ATGTTCCGTCAGGTCGGCGACTTGCCGGTATAACGGTATCACCACCTGAC
GCCATTAAAAGATTTGATATTTTTTTGCTTTTTTTCACTGAAACAAGAAC
AAAGAATTTGTAATTTGTGATATTACCACATTTTACCCGTTACCTTTCTA
ATTCAAATGCTTAACTCGATAACACAATGGCAAAGATATCGATTTACATA
TATTTCAGAAATTTTATTTACAAATTTACATATATAACATACAACGATTA
CATAGATTTCGGGACGAGTGACTGGAGATTTCTGAGTTTATGATCCTGAA
ATGAAAAGAAAAAAAAATTGAAAGTCAAAAACATTTCAAGCGAAATTTAA
GGTTGCAACGAGCAGCAACGTGATTAACAAATAAAGAAACCACTTACTTC
GTTGACAGTACCTCTATTAATTACTCAAAGGAACCAAGTCCAGAATCTGT
TTCCAATCTTAACAGACGAAACCCAGGTTGCAATGGAGTGTATGTGGTAC
TATCATCTCCCATTGTTCTTACACAAGATCGCCTCGAAGGATTTTTCCAA
GAAATCTTTGTACATTGTCAACCATAGTTTCAGGCGGTTCACAATCGACG
CC Coding sequence (CDS) from alignment at scaffold_58:1201340..1205941- >TCONS_00071040 ID=TCONS_00071040|Name=TCONS_00071040|organism=Clytia hemisphaerica|type=CDS|length=618bp|location=Sequence derived from alignment at scaffold_58:1201340..1205941- (Clytia hemisphaerica)
ATGCAGCTTGACAAGTTTGTGAACGTGATGGGTATTAACGTAATACAAGT
TATCGATCAGATACAAAGTGATAAAAATGGAGGAGACAAGAAGTTCATCG
ACTCTGAACGACTAATCGACAAAAACTGGTTCAAGAAATTAGAGAGAAGA
AGATTGAAAGAGAAACTTGCTGCCGAGAAAGAAGAAATTATTATACTGTC
CGATCAGAAACTTTCCATCAGAAAGAATGAGACAAATCACACATACAGGG
TGTCCTCTTCACTTAGCAAACGCCGAGAAGAAGATATTATTCCGACAAAC
TTAATTTTTCCAATGAAAATGAAAGTAGCTGAATTTCCGAGCATCGAGAC
AAAGGAACAAGGAACTGAGAAAGATAAATCTATACAAAGTCTACGTAGTC
GTGTCTGGCAACGGCCGAGGACTATGAAATGGTGTAAGCCAAAAGATTTT
TTATCCAATAAAGTGAAAACATACTCAGAAGCTTGCGAACTAGTCAAACA
AAATGAAAACGGTGTTATTGTGAGAGTGAAAAGGACTTCTCCTGGAGAGC
ATGATGAATTTTTCAACCTTGATTCTGGCGATAATTCAGTCGACTTTATT
ACTTTCATACCTACTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00071040-exon-scaffold_58-1575043694:1205657..1205941 | TCONS_00071040-exon-scaffold_58-1575043694:1205657..1205941 | Clytia hemisphaerica | exon |
| TCONS_00071040-exon-scaffold_58-1575043694:1205196..1205336 | TCONS_00071040-exon-scaffold_58-1575043694:1205196..1205336 | Clytia hemisphaerica | exon |
| TCONS_00071040-exon-scaffold_58-1575043694:1201340..1204169 | TCONS_00071040-exon-scaffold_58-1575043694:1201340..1204169 | Clytia hemisphaerica | exon |
| TCONS_00071040-exon-scaffold_58-1510915933:1205657..1205941 | TCONS_00071040-exon-scaffold_58-1510915933:1205657..1205941 | Clytia hemisphaerica | exon |
| TCONS_00071040-exon-scaffold_58-1510915933:1205196..1205336 | TCONS_00071040-exon-scaffold_58-1510915933:1205196..1205336 | Clytia hemisphaerica | exon |
| TCONS_00071040-exon-scaffold_58-1510915933:1201340..1204169 | TCONS_00071040-exon-scaffold_58-1510915933:1201340..1204169 | Clytia hemisphaerica | exon |
| TCONS_00071040-exon-scaffold_58-1491911889:1205657..1205941 | TCONS_00071040-exon-scaffold_58-1491911889:1205657..1205941 | Clytia hemisphaerica | exon |
| TCONS_00071040-exon-scaffold_58-1491911889:1205196..1205336 | TCONS_00071040-exon-scaffold_58-1491911889:1205196..1205336 | Clytia hemisphaerica | exon |
| TCONS_00071040-exon-scaffold_58-1491911889:1201340..1204169 | TCONS_00071040-exon-scaffold_58-1491911889:1201340..1204169 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_58 | supercontig | scaffold_58:1201340..1205941 - |
Blast
The following BLAST results are available for this feature:
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