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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00071044 ID=TCONS_00071044|Name=TCONS_00071044|organism=Clytia hemisphaerica|type=transcript|length=2091bp
TAGACAGCTTGTTTACTCTCATGTAAACGctatcaaaatttaatttcttt
cgaaagaattCTTTCGGAGGATTGAAAATAGTGTAAAATCCCTTGTCTCT
CACTCAACTCTCACCAAACACAATCATGTTTTTTACAGACAAGATGTCAC
AAACCTACACACCTATCCAACTATTTGAACTGGTTGGTCTGGTTTTTATC
TTTATTGTTGGACTAATTGGCAATTCACTCGTACTCTACGTCTTCTTGTC
GAAGATACGACGCCGTGGAGTCAAGGCCAAACCTTTCGAGCTACTTCTCT
CTATCCTAGCTATCGTGGACTTACTCTCGACTTTTTTCATGCCTGGACTT
TTTATATACTTCACGTCAGTTTATTGGAAGAAATGGCACTTCGGATACAT
CGGGTGTAAGATCTTGAGAAGTTTACCAGTCTTCTTGATCACTATTTCTC
AAGGAATTCTCATTATCATTGCGTACCAAAGATATCGAATCGTTAAAGAC
CCTCTTCATAACAAACTGACAAGatGTTCACTTCTACCCTCACTGAGTAT
TCTTATCATTGTATCAGCTCTCTTGGTGAGTCCATGGACGGTCACTTTAA
AAATCGTTGAAAACAAAGCTAATGGAATAGAGACTTGTAATTCTTCATCA
ATGGAAGGTCTGTGGATGGGAAGGGTTTTGAATTTCATATTTGAATGTTT
GAACCTGACACGTGGTGTAGTAGCAGCAGTAACCATAATCGTGCTCagcc
aaatgacgtcacaagcattGGAAAAGAATAacgatttttataagaacaac
ccAGTCTTACGTTTACGCGTACAACACGTACGTCGCTTGTTACGTACTAT
CACAATAGCGTTCAGTATCTTAGTCATCCCCGCGGATGCGTTTCACGTGA
TCTACCACACAATGACGTGGACGATGAAGCTCACACCAGAAACGTTCGCC
GTACTCCTCAATATTCACGTTCTGCTTAAACTTCTCCAATCTTCAAACAG
CGCTTTTAATTTTATCATTTACGCCGGAATGAAAGGCGACGTCAACAACT
TCTTACGTAAACTCAGCCGGCGTGTCGTGAGTAGATCCAGATTCGTGGTA
AACGTAACGGAGAAAAAGGGAGAGGAAAGAATACCGAGAAAACTAACCAC
TCTTTCGACTATATCTTCAACTGGGTGTTGAACGCTCTAAATCCAAACTC
AAACCCAGACCCTTAACTCGCTTTTTTATAATGAAGATTTATTGGATCAA
GAAAATATAACAGTGAAATACTGCATTGTACCAAAAGTTACAGTGACTAT
TCCACTCAAAAATAGCTTGCATTGGTGAAGTGAAAAATTAACTAACGAAA
TTAAGAGAGAATTATTTGTGCAATGTATTTatattaaaattgattttaaa
tacTTTCACAAATAATCCTAGTTTGATATAAATAATTCTAGATTTTTCTA
CTCTACGATAGATCTTATAGTCATTGTTGTCTCTGACCGATCTCTCAAAG
AGAAGCCATCTttccaacaacaaaacaatctctggaaaattttgaatttg
aatcttTTAGAATATAACAACGGATTGATACTACATTGAGCGGCTTGCAG
AGTCTTCAGAATAGTTAACGCGAATCTTAAGTAGGAGTAAACCTCGTGGT
TCATTTTAACTTCAGCAGTTCTTAACACGAAATAAACACAATGGTATAAA
TCAATGGGAACGATGCAGATACAATACACCAACACAATGGAATACAACAA
TTTTCGCGTGTTCTTCGTTCGCTCGATCAACTTTGGGTGAGCGGCGTAAA
ACTCTTTATTTTTGTTGAGCGCTTTGACGGTAAGGCGACCGTACACAAAG
ATGTAAACACACGAAAATAAATCTCTAAGCAACATTATGATGTCAAAAAC
GAAGTTCAAAACGAATCCTTTTCTTGAAGAAGTTTGCGAGGTTGATGTAC
ACGTGTTAAGACCTGACTTTTTGTTCTGTAAAATATCCAACGTCATCGTC
CATGGGATGGTTAAGATGATTGACATGATTGCGGACGCAAGCAACCATGT
GATGATGAAACGATTTGTTATTGGTTCTTCTAAGGGTTTGC Run BLAST on NCBI transcript from alignment at scaffold_58:1240436..1243109- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00071044 ID=TCONS_00071044|Name=TCONS_00071044|organism=Clytia hemisphaerica|type=transcript|length=2674bp|location=Sequence derived from alignment at scaffold_58:1240436..1243109- (Clytia hemisphaerica)
TAGACAGCTTGTTTACTCTCATGTAAACGCTATCAAAATTTAATTTCTTT
CGAAAGAATTCTTTCGGAGGATTGAAAATAGTGTAAAATCCCTTGTCTCT
CACTCAACTCTCACCAAACACAATCATGTTTTTTACAGACAAGATGTCAC
AAACCTACACACCTATCCAACTATTTGAACTGGTTGGTCTGGTTTTTATC
TTTATTGTTGGACTAATTGGCAATTCACTCGTACTCTACGTCTTCTTGTC
GAAGATACGACGCCGTGGAGTCAAGGCCAAACCTTTCGAGCTACTTCTCT
CTATCCTAGCTATCGTGGACTTACTCTCGACTTTTTTCATGCCTGGACTT
TTTATATACTTCACGTCAGTTTATTGGAAGAAATGGCACTTCGGATACAT
CGGGTGTAAGATCTTGAGAAGTTTACCAGTCTTCTTGATCACTATTTCTC
AAGGAATTCTCATTATCATTGCGTACCAAAGATATCGAATCGTTAAAGAC
CCTCTTCATAACAAACTGACAAGGTGAAAGCAAAAAAACTTTTGATTCCC
TAAATCTTTATCCAATATTAAGGAGGCCTCCCAGTGGACCTTCAATTCAC
ACAATCACGCAAAATTTGTTCCCTAATTCTCACGCATTCACGCAATGTTT
TTTCACAATTCACGCAATGTTTTTCACGCAAAGCTTTCCAATTCACGTTC
ATTCACGCAGTTTTTTTTCTACTTTTCACGTATTCACGCAAGTGAAAAAG
CCCATTCACGCATTCACGCAAACCGCTGGGTGGGGCATTAAGTACAATGT
TTATCGTTCGATAATTTTGACTCTTGTTTAAGAAATCATGTATCGTAGGA
GTTAAGTAAGCGCTGGAAGAAAAATTGTCGGCGGGAGGGGCTTAAAGCAC
CTTCTCATCAAATTTTGCTCGTTCTCCTACGCACCTCCTATTTTAGAAAA
CATTCAACCGCTCTTATCTCCCCCTCTTAAATTATCAATTTATAGACTAG
CTTGTTTGTGACTAGTCAAGTGAGGCTTTAGGTTAAGGCTGTTGATAACA
ATTTAAAACTTATTCAAGCATTACTCTAATCTAAGTTTCGGATTCTTTTT
CTTTAGATGTTCACTTCTACCCTCACTGAGTATTCTTATCATTGTATCAG
CTCTCTTGGTGAGTCCATGGACGGTCACTTTAAAAATCGTTGAAAACAAA
GCTAATGGAATAGAGACTTGTAATTCTTCATCAATGGAAGGTCTGTGGAT
GGGAAGGGTTTTGAATTTCATATTTGAATGTTTGAACCTGACACGTGGTG
TAGTAGCAGCAGTAACCATAATCGTGCTCAGCCAAATGACGTCACAAGCA
TTGGAAAAGAATAACGATTTTTATAAGAACAACCCAGTCTTACGTTTACG
CGTACAACACGTACGTCGCTTGTTACGTACTATCACAATAGCGTTCAGTA
TCTTAGTCATCCCCGCGGATGCGTTTCACGTGATCTACCACACAATGACG
TGGACGATGAAGCTCACACCAGAAACGTTCGCCGTACTCCTCAATATTCA
CGTTCTGCTTAAACTTCTCCAATCTTCAAACAGCGCTTTTAATTTTATCA
TTTACGCCGGAATGAAAGGCGACGTCAACAACTTCTTACGTAAACTCAGC
CGGCGTGTCGTGAGTAGATCCAGATTCGTGGTAAACGTAACGGAGAAAAA
GGGAGAGGAAAGAATACCGAGAAAACTAACCACTCTTTCGACTATATCTT
CAACTGGGTGTTGAACGCTCTAAATCCAAACTCAAACCCAGACCCTTAAC
TCGCTTTTTTATAATGAAGATTTATTGGATCAAGAAAATATAACAGTGAA
ATACTGCATTGTACCAAAAGTTACAGTGACTATTCCACTCAAAAATAGCT
TGCATTGGTGAAGTGAAAAATTAACTAACGAAATTAAGAGAGAATTATTT
GTGCAATGTATTTATATTAAAATTGATTTTAAATACTTTCACAAATAATC
CTAGTTTGATATAAATAATTCTAGATTTTTCTACTCTACGATAGATCTTA
TAGTCATTGTTGTCTCTGACCGATCTCTCAAAGAGAAGCCATCTTTCCAA
CAACAAAACAATCTCTGGAAAATTTTGAATTTGAATCTTTTAGAATATAA
CAACGGATTGATACTACATTGAGCGGCTTGCAGAGTCTTCAGAATAGTTA
ACGCGAATCTTAAGTAGGAGTAAACCTCGTGGTTCATTTTAACTTCAGCA
GTTCTTAACACGAAATAAACACAATGGTATAAATCAATGGGAACGATGCA
GATACAATACACCAACACAATGGAATACAACAATTTTCGCGTGTTCTTCG
TTCGCTCGATCAACTTTGGGTGAGCGGCGTAAAACTCTTTATTTTTGTTG
AGCGCTTTGACGGTAAGGCGACCGTACACAAAGATGTAAACACACGAAAA
TAAATCTCTAAGCAACATTATGATGTCAAAAACGAAGTTCAAAACGAATC
CTTTTCTTGAAGAAGTTTGCGAGGTTGATGTACACGTGTTAAGACCTGAC
TTTTTGTTCTGTAAAATATCCAACGTCATCGTCCATGGGATGGTTAAGAT
GATTGACATGATTGCGGACGCAAGCAACCATGTGATGATGAAACGATTTG
TTATTGGTTCTTCTAAGGGTTTGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00071044-exon-scaffold_58-1575043694:1242587..1243109 | TCONS_00071044-exon-scaffold_58-1575043694:1242587..1243109 | Clytia hemisphaerica | exon |
| TCONS_00071044-exon-scaffold_58-1575043694:1240436..1242003 | TCONS_00071044-exon-scaffold_58-1575043694:1240436..1242003 | Clytia hemisphaerica | exon |
| TCONS_00071044-exon-scaffold_58-1510915933:1242587..1243109 | TCONS_00071044-exon-scaffold_58-1510915933:1242587..1243109 | Clytia hemisphaerica | exon |
| TCONS_00071044-exon-scaffold_58-1510915933:1240436..1242003 | TCONS_00071044-exon-scaffold_58-1510915933:1240436..1242003 | Clytia hemisphaerica | exon |
| TCONS_00071044-exon-scaffold_58-1491911889:1242587..1243109 | TCONS_00071044-exon-scaffold_58-1491911889:1242587..1243109 | Clytia hemisphaerica | exon |
| TCONS_00071044-exon-scaffold_58-1491911889:1240436..1242003 | TCONS_00071044-exon-scaffold_58-1491911889:1240436..1242003 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_58 | supercontig | scaffold_58:1240436..1243109 - |
Blast
The following BLAST results are available for this feature:
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