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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00071046 ID=TCONS_00071046|Name=TCONS_00071046|organism=Clytia hemisphaerica|type=transcript|length=3125bp
GAAACAACTCAAGGACCACTTGTCAGCACTGACGGTAAACGACCATCCAC
TGCTATAGCAGGAACTACTGAAGATCCATCTGAGACTACTCCAGGAGAAA
CTACTCAAGGACCATTTGTCAGCACTGACGGTAAAGGACCATCAACTGCT
GTAGCAGGAACTACTGAAGATCCATCTGAGACTACTCCAGGAGAAACAAC
TCAAGGACCACTTGTCAGCACTGACGGTAAACGACCATCCACTGCTGTAG
CAGGAACTACTGAAGATCCATCTGAGACTACTCCAGGAGAAACAACTCAA
GGACCATTTGTCAGCACTGAAGGGAAAGGACCATCAACTGCTGTAGCAGG
AACTACTGAAGCTCCATCTGAGACTACTCCAGGAGAAACAACTCAAGGAC
CATTTGTCAGCACTGAAGGGAAAGGACCATCAACTGCTGTAGCAGGAACT
ACTGAAGCTCCATCTGAGACTACTCCAGGAGAAACAACTCAAGGACCACT
TGTCAGTACTGATGGTAAACGACCATCCACTGCTGTAGCAGGAACTACTG
AAGCACCAGGAGAACTAACTCAAGGACCATTTGTTAGCACTGAAGGTAAA
GGACCATCAACTGCTGTAGCAGGAACTACTGAAGCTCCATATGAGACTAC
TCCAGGAGAAACAACTCAAGGACCACTTGCCAGTACTGAAGGTAAACGAC
CATCCACTGCTGTAGCAGGAACAACTGAAGCTCCATCTGAGACTACTCCA
GGAGAAACAACTCAAGGACCATTTGTCAGCACTGAAGGTAAAGGACCATC
AACTGCTGTAGCAGGAACTACTGAAGATCCATCTGAGACTACTCCAGGAG
AAACAACTCAAGGAGCACTTGCCAGTACTGAAGGTAAACGACCATCCACT
GCTGTAGCAGGAACAACTGAAGCTCCATCTGAGACTACTCCAGGAGAAAC
AACTCAAGGACCACTTGTCAGTACTGATGGTAAACGACCATCCACTGCTG
TAGCAGGAACAACTGAAGCTCCATCTGAGACTACTCCAGGAGAAACAACT
CAAGGACCACTTGTCAGTACTGATGGTAAACGACCATCCACTGCTGTAGC
AGGAACTACTGAAGCTCCCGGAGAAACAACTCAAGGACCATTTGTCAGTA
CTGAAGGTAAAAGAACAACAACTGCTGTAGCGGGAACTACTGAAGCTCCA
TCTGAGACTACTCCAGGAGAAACAACTCAAGGACCACTTGTCAGTACTGA
AGGTAAAGGACCATCAACTGCTGTAGCAGGAACTACTGAAGCACCAGGAG
AACTAACTCAAGGACCATTTGTCAGTACTGAAGGTAAAGGACCAACAACT
GAAGGTGCACTCATCCAAAGATCCTCTTCACTTTCTCCAAAACAAACGAC
TGACCGAATTAGCGTGACCATTGCACCAACAGCAGATGTGCTGAATTTCG
TCGAAGACTGTCCAATGTCGATCACTTGCTCCACCGATAACATGAGAGTT
GTTCTTAACAAAGCTGATTTGAAAGGTTTCTCTATGAGTTCTCTGCATGT
TATTGATCAAAGTGCTCAATGCCAACCTTTCATCAATGCTACACATATCA
TTTTCAATGTTCCTTTGTATGGTTGTGGAACTACAAGGAAGTATTTGGAA
AATGCAATCTTATATGAAAATAAGCTCTTGAGTAGCACTGCAGATTTGAT
CACAAGATCGAGACAGCTTCGAGTCAATTTCTCCTGTGCTTTCCCAACCA
CTTCCAAAGTATCTGCGAACGGTTACGACATTAAGGACATCATCCCAGAC
GTTTTAAAGGAGGAGCAAGGCTTTGGTGAATTCGCTGTCCTCATCAATCT
TTACCAAGACGAGAAATTCACGCAACGTTTGGATAACGGTGAAGCTCCTG
TTGAAGTTTCAGTTCAAGATCGAATCTTCTTTGAAGTCAAGTTGGATTCT
ATCGATCAACGCTTGACGGTTTTTGCGGAGAATTGCTCCGTCACTCCGAC
CGCAAACAAAGACGACCCACGCCGTTATTACCTTCTCAAGAAAGGTTGTA
AAACTGATCCCACGTTACGTAGCTACGCATCCCCGCCTAACGCGCACCGC
ATGAGTTACGAATCTTTCACGTTTGTCGGAGTGGAAGACCCAGTGACGTA
TCTGCAGTGTGATGTCTCCATTTGCGATAACCAAGCTAAAGATCGAAGAT
GCCGTGACCGAAAATGCGCGGCTGATGATAGTGACCGCAAGCGACGAAGT
TTATCTCACGGATACATCATGGAAAAGGAGCATCCACACTCAGGTTTTGT
CATCCATAGTAAAGCGATTGTCACGCACGAGTTACACCGACATTCACGCA
AAGCTCGAAGCATACGTCCTCAAACCGACTTAACTGCCAACGAAAATAAA
GGATTTTATGAATCTAACTTAGGAATTGTGATGGTTGCGCTGATGGTCAG
CCTGTCTGCCTGTTTGACGCTCGGAATAATTATCTACACCAGATATCAAC
AAAAACAGTCACCAACCACGTTTCCATAGAAACTTAATGCAAAGCAATAC
AAACATATAGATAACCGTTAAAAAATATAcgatttatttatttctaagAG
ACGTCacgcaaaatttacaaaaatgcgACAGGGCTCGTCCTCCATTTGAC
GGTGACGTATTTGTAAAGAAGACGAAATACGGTCAAGGCTCGTTCATGCC
GATGGTCCAAAGATCAAGAGGGTCCAGTACCTGGCCCATGACATCGCTAT
GACGACGATACCCTTGCCCAAAAAATGATGCACAATTTCCGAGacaaaaa
ttttggttttaagagtacaattttatttttatttttcgacattttgaaag
agtttattgttattttttgattgaattgacGAAAGCTTTAGAGAGACAAG
TTTAATGGtaccaaattaaacatttttaggtttcatTTGCAAAATAAGAT
CGCCTGATTTCCCGGTCCTTTGCATCTTGTACTGAATATTGAGCCTAAAT
CTCGCATTGAATCATTTTAGTAGTCAACAGTTATagaatcattgtttttt
tttaaatatttttctcctaaCATAATTATTGTTGTTAAAAGAAAACGTTA
AAGATATTATTTATGTAAATACAGA Run BLAST on NCBI transcript from alignment at scaffold_58:1244321..1247932- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00071046 ID=TCONS_00071046|Name=TCONS_00071046|organism=Clytia hemisphaerica|type=transcript|length=3612bp|location=Sequence derived from alignment at scaffold_58:1244321..1247932- (Clytia hemisphaerica)
GAAACAACTCAAGGACCACTTGTCAGCACTGACGGTAAACGACCATCCAC
TGCTATAGCAGGAACTACTGAAGATCCATCTGAGACTACTCCAGGAGAAA
CTACTCAAGGACCATTTGTCAGCACTGACGGTAAAGGACCATCAACTGCT
GTAGCAGGAACTACTGAAGATCCATCTGAGACTACTCCAGGAGAAACAAC
TCAAGGACCACTTGTCAGCACTGACGGTAAACGACCATCCACTGCTGTAG
CAGGAACTACTGAAGATCCATCTGAGACTACTCCAGGAGAAACAACTCAA
GGACCATTTGTCAGCACTGAAGGGAAAGGACCATCAACTGCTGTAGCAGG
AACTACTGAAGCTCCATCTGAGACTACTCCAGGAGAAACAACTCAAGGAC
CATTTGTCAGCACTGAAGGGAAAGGACCATCAACTGCTGTAGCAGGAACT
ACTGAAGCTCCATCTGAGACTACTCCAGGAGAAACAACTCAAGGACCACT
TGTCAGTACTGATGGTAAACGACCATCCACTGCTGTAGCAGGAACTACTG
AAGCACCAGGAGAACTAACTCAAGGACCATTTGTTAGCACTGAAGGTAAA
GGACCATCAACTGCTGTAGCAGGAACTACTGAAGCTCCATATGAGACTAC
TCCAGGAGAAACAACTCAAGGACCACTTGCCAGTACTGAAGGTAAACGAC
CATCCACTGCTGTAGCAGGAACAACTGAAGCTCCATCTGAGACTACTCCA
GGAGAAACAACTCAAGGACCATTTGTCAGCACTGAAGGTAAAGGACCATC
AACTGCTGTAGCAGGAACTACTGAAGATCCATCTGAGACTACTCCAGGAG
AAACAACTCAAGGAGCACTTGCCAGTACTGAAGGTAAACGACCATCCACT
GCTGTAGCAGGAACAACTGAAGCTCCATCTGAGACTACTCCAGGAGAAAC
AACTCAAGGACCACTTGTCAGTACTGATGGTAAACGACCATCCACTGCTG
TAGCAGGAACAACTGAAGCTCCATCTGAGACTACTCCAGGAGAAACAACT
CAAGGACCACTTGTCAGTACTGATGGTAAACGACCATCCACTGCTGTAGC
AGGAACTACTGAAGCTCCCGGAGAAACAACTCAAGGACCATTTGTCAGTA
CTGAAGGTAAAAGAACAACAACTGCTGTAGCGGGAACTACTGAAGCTCCA
TCTGAGACTACTCCAGGAGAAACAACTCAAGGACCACTTGTCAGTACTGA
AGGTAAAGGACCATCAACTGCTGTAGCAGGAACTACTGAAGCACCAGGAG
AACTAACTCAAGGACCATTTGTCAGTACTGAAGGTAAAGGACCAACAACT
GAAGGTGCACTCATCCAAAGATCCTCTTCACTTTCTCCAAAACAAACGAC
TGACCGAATTAGCGTGACCATTGCACCAACAGCAGATGTGCTGAATTTCG
TCGAAGACTGTCCAATGTCGATCACTTGCTCCACCGATAACATGAGAGTT
GTTCTTAACAAAGCTGATTTGAAAGGTTTCTCTATGAGTTCTCTGCATGT
TATTGATCAAAGTGCTCAATGCCAACCTTTCATCAATGCTACACATATCA
TTTTCAATGTTCCTTTGTATGGTTGTGGAACTACAAGGAAGTATTTGGAA
AATGCAATCTTATATGAAAATAAGGTGAGTTGGTTGCCTAAGTTTTTAGA
CTCGACCTTATCAATTCTTTTTCGTTTGTATGTACGATCACATAAAGGCA
AGAACATAACGTAAGTGCTTTATAATCTGATCTGAAATATTATAACAAGT
TCCTTTATATCAATAACCTAAATTCAAGCAATGAAAATTTCTCAAAAACT
TTTGTGTTTGCTTTATATTTCTATCACTTGTCAAAGTTTTTTTCATCGGG
TTCATCTATTTGATAACATTGTTGTTTCTTCCATCTCAAAGTTTCAAAGG
CTAAATTTATTTATTCATTGGCAATCCGTAAATCGCTTGATCTCTTATTT
TACAGCTCTTGAGTAGCACTGCAGATTTGATCACAAGATCGAGACAGCTT
CGAGTCAATTTCTCCTGTGCTTTCCCAACCACTTCCAAAGTATCTGCGAA
CGGTTACGACATTAAGGACATCATCCCAGACGTTTTAAAGGAGGAGCAAG
GCTTTGGTGAATTCGCTGTCCTCATCAATCTTTACCAAGACGAGAAATTC
ACGCAACGTTTGGATAACGGTGAAGCTCCTGTTGAAGTTTCAGTTCAAGA
TCGAATCTTCTTTGAAGTCAAGTTGGATTCTATCGATCAACGCTTGACGG
TTTTTGCGGAGAATTGCTCCGTCACTCCGACCGCAAACAAAGACGACCCA
CGCCGTTATTACCTTCTCAAGAAAGGTTGTAAAACTGATCCCACGTTACG
TAGCTACGCATCCCCGCCTAACGCGCACCGCATGAGTTACGAATCTTTCA
CGTTTGTCGGAGTGGAAGACCCAGTGACGTATCTGCAGTGTGATGTCTCC
ATTTGCGATAACCAAGCTAAAGATCGAAGATGCCGTGACCGAAAATGCGC
GGCTGATGATAGTGACCGCAAGCGACGAAGTTTATCTCACGGATACATCA
TGGAAAAGGAGCATCCACACTCAGGTTTTGTCATCCATAGTAAAGCGATT
GTCACGCACGAGTTACACCGACATTCACGCAAAGCTCGAAGCATACGTCC
TCAAACCGACTTAACTGCCAACGAAAATAAAGGATTTTATGAATCTAACT
TAGGTAAGAATCTTTTATCATTTTTCAGAATCTTTTCAATCTGTTAATCG
ATAGCTACGTTAGAAATATTTCATTTATATTTCCAGAAATTTTGAAGTTT
GTTATGAATCTTTTTTTTGGAAATGGATGCTCATTTTTCTTTTAATTTTC
CTCTTATAGGAATTGTGATGGTTGCGCTGATGGTCAGCCTGTCTGCCTGT
TTGACGCTCGGAATAATTATCTACACCAGATATCAACAAAAACAGTCACC
AACCACGTTTCCATAGAAACTTAATGCAAAGCAATACAAACATATAGATA
ACCGTTAAAAAATATACGATTTATTTATTTCTAAGAGACGTCACGCAAAA
TTTACAAAAATGCGACAGGGCTCGTCCTCCATTTGACGGTGACGTATTTG
TAAAGAAGACGAAATACGGTCAAGGCTCGTTCATGCCGATGGTCCAAAGA
TCAAGAGGGTCCAGTACCTGGCCCATGACATCGCTATGACGACGATACCC
TTGCCCAAAAAATGATGCACAATTTCCGAGACAAAAATTTTGGTTTTAAG
AGTACAATTTTATTTTTATTTTTCGACATTTTGAAAGAGTTTATTGTTAT
TTTTTGATTGAATTGACGAAAGCTTTAGAGAGACAAGTTTAATGGTACCA
AATTAAACATTTTTAGGTTTCATTTGCAAAATAAGATCGCCTGATTTCCC
GGTCCTTTGCATCTTGTACTGAATATTGAGCCTAAATCTCGCATTGAATC
ATTTTAGTAGTCAACAGTTATAGAATCATTGTTTTTTTTTAAATATTTTT
CTCCTAACATAATTATTGTTGTTAAAAGAAAACGTTAAAGATATTATTTA
TGTAAATACAGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00071046-exon-scaffold_58-1575043694:1246259..1247932 | TCONS_00071046-exon-scaffold_58-1575043694:1246259..1247932 | Clytia hemisphaerica | exon |
| TCONS_00071046-exon-scaffold_58-1575043694:1245180..1245927 | TCONS_00071046-exon-scaffold_58-1575043694:1245180..1245927 | Clytia hemisphaerica | exon |
| TCONS_00071046-exon-scaffold_58-1575043694:1244321..1245023 | TCONS_00071046-exon-scaffold_58-1575043694:1244321..1245023 | Clytia hemisphaerica | exon |
| TCONS_00071046-exon-scaffold_58-1510915933:1246259..1247932 | TCONS_00071046-exon-scaffold_58-1510915933:1246259..1247932 | Clytia hemisphaerica | exon |
| TCONS_00071046-exon-scaffold_58-1510915933:1245180..1245927 | TCONS_00071046-exon-scaffold_58-1510915933:1245180..1245927 | Clytia hemisphaerica | exon |
| TCONS_00071046-exon-scaffold_58-1510915933:1244321..1245023 | TCONS_00071046-exon-scaffold_58-1510915933:1244321..1245023 | Clytia hemisphaerica | exon |
| TCONS_00071046-exon-scaffold_58-1491911889:1246259..1247932 | TCONS_00071046-exon-scaffold_58-1491911889:1246259..1247932 | Clytia hemisphaerica | exon |
| TCONS_00071046-exon-scaffold_58-1491911889:1245180..1245927 | TCONS_00071046-exon-scaffold_58-1491911889:1245180..1245927 | Clytia hemisphaerica | exon |
| TCONS_00071046-exon-scaffold_58-1491911889:1244321..1245023 | TCONS_00071046-exon-scaffold_58-1491911889:1244321..1245023 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_58 | supercontig | scaffold_58:1244321..1247932 - |
Blast
BLAST of TCONS_00071046 vs. Swiss-Prot (Human)
Match: CUZD1 (CUB and zona pellucida-like domain-containing protein 1 OS=Homo sapiens GN=CUZD1 PE=2 SV=1) HSP 1 Score: 120.553 bits (301), Expect = 5.071e-28 Identity = 90/297 (30.30%), Postives = 151/297 (50.84%), Query Frame = 1
Query: 1339 GPTTEGALI-QRSSSLSPKQTTDRISVTIAPTADVLN------------FVEDCPM-SITCSTDNMRVVLNKADLKGFSMSSLHVIDQSAQCQPFINATHIIFNVPLYGCGTTRKYLENAILYENKL---LSSTADLITRSRQLRVNFSCAFPTTSKVSANGYDIKDIIPDVLKEEQGFGEFAVLINLYQDEKFTQRLDNGEAPVEVSVQDRIFFEVKLDSIDQRLTVFAENCSVTPTANKDDPRRYYLLKKGCKTDPTLRSYASPPNAHRMSYESFTFVGVEDPVTYLQCDVSICD 2178
GP+T LI Q ++P + S+T+ + D N + E+ S+TCS+D MRV+++K+ L+ F+ + ++ + C+P ++ + F+VPL GCGT RK + +I Y N + SST+++ITR +QL++ C S V Y +D DV++ + G++ + L++ F + + E+P V + +F +V L + D L VF + C +PT++ P Y L+K GC D T + Y + R + +F F+ V YLQC V ICD
Sbjct: 217 GPSTNSGLIGQVCGRVTPTFESSSNSLTVVLSTDYANSYRGFSASYTSIYAENINTTSLTCSSDRMRVIISKSYLEAFNSNGNNLQLKDPTCRPKLSNV-VEFSVPLNGCGTIRKVEDQSITYTNIITFSASSTSEVITRQKQLQIIVKCEMGHNSTVEI-IYITED---DVIQSQNALGKYNTSMALFESNSFEKTI--LESPYYVDLNQTLFVQVSLHTSDPNLVVFLDTCRASPTSDFASP-TYDLIKSGCSRDETCKVYPLFGHYGRFQFNAFKFLRSMSSV-YLQCKVLICD 504
The following BLAST results are available for this feature:
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