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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00071048 ID=TCONS_00071048|Name=TCONS_00071048|organism=Clytia hemisphaerica|type=transcript|length=1681bp
TCTGAAGAAACCACTCCAAGCTCTGAAGAAACCACTCCAAGCTCTGAAGA
AACCACTCCAAGCTCTGAAGAAACCACTCCAAGCTCTGAAGAAACCACTC
CAAGCTCAGAAGAAACCACTCCAAGCTCAGAAGAAACAACTCCAAGTTCT
GAAGACAAAACAACAGCTGTTAGTGGATTAACAACATCAAAACCAGTTGT
CTCAACAGATGCTCCTTTACTTTCTACAGATGGTCAAGAAACTACTCCAA
GCTCTGAAGAAACCACTCCAAGCTCAGAAGAAACTACTCCAAGTCCAGTA
GAAATCAGTCCAAGCTCTGAAGTAACAACTTCTAGCTCTGAAGATAAAAC
AACAGCTGTTAGTGGATTAACTACATCAAAACCAGTTGTCTCAACGGATG
CTCCTTTAGTTTCTACAGATGGTCAAGAAAGCACACCAAGGTCTGGAGAA
ACTACTCCAAGCTCTGAAGACAAAACAACTGCTTCATATAGATTAACAAC
ATTTAAACCAGTTGTCTCAACTGATGCACCTTTAGTTGTTACAGATGGTA
AAGACACCACTCCGAGCTCTGAAGAAACTACTCCAAGCTCTGAAGAAACC
ACACCTAGCTCTGAAAAAACCACTCCAAGCTCTGAAGAAACCACTCCAAG
CTCTGAAGAAACCACTCCAAGCTCTGAAGAAACCACTTCAAGCTCTGAAG
AAACCACTCCAAGCTCAGAAGAAACCACTCCAAGCTCAGAAGAAACCACT
CCAAGCTCAGGAGAAACTACTCCAAGCTCTAAAGAAACCACAACAGTTCC
TAAACCTGTTATTTCAACGGATGTCCAAGAAACAACTTCTATTTCGATTG
ATGACACAACAAAAATGACAAGTACGCCGTCCTTGTCAACAACTACCTTT
ACACCGATTGTCATCACTGAAGGTTCAAATGAAATTACAACTCGTCGATC
CGATGAACAAACTACTCTTGATGTTGGAGAAAGTAATTTTTCAGAGAAGC
CAAACACAACACCCTTTGGACCAACACGTTCTCAGACAACAACTACTTGT
TGTGGTGAAAAAACAACAACGCAGGAAACAACTCTTCCTTCAACCAAAAC
AATCGAACTTGTCAGCACTGATAGTAAAGGACCATCCACTGATGAAGCAG
GAACTACTAAAGCTCCATCTGAGACTACTCCAGGAGAAACAACTCAACGA
CCACTTGTCAGCACTGAAGGTAAAGGACCATCCACTGCTGTAGCAGGAAC
TACTGAAGCTCCATCTGAGACTACTCCCGGAGAAACAACTCAAGGACCAC
TTGTCAGTACTGATGGTAAAGGACCATCCACTGCTGTAGCAGGAACAACT
GAAGCTCCATCTGAGACTACTCCAGGAGAAAAAACTCAAGGACCACTTGT
CAGCACTGAAGGTAAACGACCATCCACTGCTGTAGCAGGAACTACTGAAG
CTCCATCTGAGACTACTCCAGGAGAAACAACTCAAGGACCATTTGTCAGC
ACTGACGGTAAAGGACCATCAACTGCTGTAGCAGGAACTACTGAGGCTCC
ATCTGAGACTACTCCGGGAGAAACAACTCAAGGACCACTTGTCAGCACTG
AAGGTAAAGGACCATCAACTGCTGTAGCAGGAACAACTGAAGCTCCATCT
GAAACTACTCCAGGAGAAACAACTCAAGGAC Run BLAST on NCBI transcript from alignment at scaffold_58:1250929..1252756- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00071048 ID=TCONS_00071048|Name=TCONS_00071048|organism=Clytia hemisphaerica|type=transcript|length=1828bp|location=Sequence derived from alignment at scaffold_58:1250929..1252756- (Clytia hemisphaerica)
TCTGAAGAAACCACTCCAAGCTCTGAAGAAACCACTCCAAGCTCTGAAGA
AACCACTCCAAGCTCTGAAGAAACCACTCCAAGCTCTGAAGAAACCACTC
CAAGCTCAGAAGAAACCACTCCAAGCTCAGAAGAAACAACTCCAAGTTCT
GAAGACAAAACAACAGCTGTTAGTGGATTAACAACATCAAAACCAGTTGT
CTCAACAGATGTTCCTTTAGTTTCTACAGATGGTCAAGAAACAACACCAA
GTTCAGGAGAAACTACTCTAACCTCTGAAGAAACAACTCCAAGCTCTGAA
GACAAAACAACTGCTGCAAGTGGATCAACAACATTGAAACCAGTTGTCTC
AACAGATGCTCCTTTACTTTCTACAGATGGTCAAGAAACTACTCCAAGCT
CTGAAGAAACCACTCCAAGCTCAGAAGAAACTACTCCAAGTCCAGTAGAA
ATCAGTCCAAGCTCTGAAGTAACAACTTCTAGCTCTGAAGATAAAACAAC
AGCTGTTAGTGGATTAACTACATCAAAACCAGTTGTCTCAACGGATGCTC
CTTTAGTTTCTACAGATGGTCAAGAAAGCACACCAAGGTCTGGAGAAACT
ACTCCAAGCTCTGAAGACAAAACAACTGCTTCATATAGATTAACAACATT
TAAACCAGTTGTCTCAACTGATGCACCTTTAGTTGTTACAGATGGTAAAG
ACACCACTCCGAGCTCTGAAGAAACTACTCCAAGCTCTGAAGAAACCACA
CCTAGCTCTGAAAAAACCACTCCAAGCTCTGAAGAAACCACTCCAAGCTC
TGAAGAAACCACTCCAAGCTCTGAAGAAACCACTTCAAGCTCTGAAGAAA
CCACTCCAAGCTCAGAAGAAACCACTCCAAGCTCAGAAGAAACCACTCCA
AGCTCAGGAGAAACTACTCCAAGCTCTAAAGAAACCACAACAGTTCCTAA
ACCTGTTATTTCAACGGATGTCCAAGAAACAACTTCTATTTCGATTGATG
ACACAACAAAAATGACAAGTACGCCGTCCTTGTCAACAACTACCTTTACA
CCGATTGTCATCACTGAAGGTTCAAATGAAATTACAACTCGTCGATCCGA
TGAACAAACTACTCTTGATGTTGGAGAAAGTAATTTTTCAGAGAAGCCAA
ACACAACACCCTTTGGACCAACACGTTCTCAGACAACAACTACTTGTTGT
GGTGAAAAAACAACAACGCAGGAAACAACTCTTCCTTCAACCAAAACAAT
CGAACTTGTCAGCACTGATAGTAAAGGACCATCCACTGATGAAGCAGGAA
CTACTAAAGCTCCATCTGAGACTACTCCAGGAGAAACAACTCAACGACCA
CTTGTCAGCACTGAAGGTAAAGGACCATCCACTGCTGTAGCAGGAACTAC
TGAAGCTCCATCTGAGACTACTCCCGGAGAAACAACTCAAGGACCACTTG
TCAGTACTGATGGTAAAGGACCATCCACTGCTGTAGCAGGAACAACTGAA
GCTCCATCTGAGACTACTCCAGGAGAAAAAACTCAAGGACCACTTGTCAG
CACTGAAGGTAAACGACCATCCACTGCTGTAGCAGGAACTACTGAAGCTC
CATCTGAGACTACTCCAGGAGAAACAACTCAAGGACCATTTGTCAGCACT
GACGGTAAAGGACCATCAACTGCTGTAGCAGGAACTACTGAGGCTCCATC
TGAGACTACTCCGGGAGAAACAACTCAAGGACCACTTGTCAGCACTGAAG
GTAAAGGACCATCAACTGCTGTAGCAGGAACAACTGAAGCTCCATCTGAA
ACTACTCCAGGAGAAACAACTCAAGGAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00071048-exon-scaffold_58-1575043694:1252547..1252756 | TCONS_00071048-exon-scaffold_58-1575043694:1252547..1252756 | Clytia hemisphaerica | exon |
| TCONS_00071048-exon-scaffold_58-1575043694:1250929..1252399 | TCONS_00071048-exon-scaffold_58-1575043694:1250929..1252399 | Clytia hemisphaerica | exon |
| TCONS_00071048-exon-scaffold_58-1510915933:1252547..1252756 | TCONS_00071048-exon-scaffold_58-1510915933:1252547..1252756 | Clytia hemisphaerica | exon |
| TCONS_00071048-exon-scaffold_58-1510915933:1250929..1252399 | TCONS_00071048-exon-scaffold_58-1510915933:1250929..1252399 | Clytia hemisphaerica | exon |
| TCONS_00071048-exon-scaffold_58-1491911889:1252547..1252756 | TCONS_00071048-exon-scaffold_58-1491911889:1252547..1252756 | Clytia hemisphaerica | exon |
| TCONS_00071048-exon-scaffold_58-1491911889:1250929..1252399 | TCONS_00071048-exon-scaffold_58-1491911889:1250929..1252399 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_58 | supercontig | scaffold_58:1250929..1252756 - |
Blast
The following BLAST results are available for this feature:
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