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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00071055 ID=TCONS_00071055|Name=TCONS_00071055|organism=Clytia hemisphaerica|type=transcript|length=3039bpRun BLAST on NCBI protein sequence of TCONS_00071055-protein >TCONS_00071055-protein ID=TCONS_00071055-protein|Name=TCONS_00071055-protein|organism=Clytia hemisphaerica|type=polypeptide|length=338bp MNKIDVHNHILPKDWPNLKERYGYGGFIQLCHCQDGTTDMMKDETFFRKVRun BLAST on NCBI transcript from alignment at scaffold_58:1337079..1349588- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00071055 ID=TCONS_00071055|Name=TCONS_00071055|organism=Clytia hemisphaerica|type=transcript|length=12510bp|location=Sequence derived from alignment at scaffold_58:1337079..1349588- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_58:1337079..1349588- >TCONS_00071055 ID=TCONS_00071055|Name=TCONS_00071055|organism=Clytia hemisphaerica|type=CDS|length=12204bp|location=Sequence derived from alignment at scaffold_58:1337079..1349588- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00071055 vs. Swiss-Prot (Human)
Match: ACMSD (2-amino-3-carboxymuconate-6-semialdehyde decarboxylase OS=Homo sapiens GN=ACMSD PE=1 SV=1) HSP 1 Score: 477.248 bits (1227), Expect = 2.177e-159 Identity = 214/333 (64.26%), Postives = 271/333 (81.38%), Query Frame = 1
Query: 1612 DVHNHILPKDWPNLKERYGYGGFIQLCHCQDGTTDMMKDETFFRKVDPNCFSPEHRLKEMDQTGVTVQVLSTVPVMFSYWAKPEDTLDLSKILNDDLAQTVKKYPKRFIGLGTVPMQAPELAVQELRRCVKDLGFPGIMIGSHINEWNLDAKELFPIFQEAEKLGASIFIHPWDMQLDGRMSKYWLPWLVGMPSESTIAIASLIFGGVLEKLPNLKICLAHGGGAFPYTIGRLAHGHHCRPDLVAVSNPHSPRKYIGRIYTDSLVHDPDALAYLVKAIGEEQVMLGTDYPFPLGELDCGKLIESMTIFDDTLKKKLLWDNCFKFLGMESKFYE 2610
D+H+HILPK+WP+LK+R+GYGG++QL H G ++KD FR V NC+ PE R++EMDQ GVTVQ LSTVPVMFSYWAKPEDTL+L ++LN+DLA TV YP+RF+GLGT+PMQAPELAV+E+ RCVK+LGFPG+ IG+H+NEW+L+A+ELFP++ AE+L S+F+HPWDMQ+DGRM+KYWLPWLVGMP+E+TIAI S+I GGV EK P LK+C AHGGGAFP+T+GR++HG RPDL A NP +P+KY+G YTD+LVHDP +L L IG+++V+LGTDYPFPLGEL+ GKLIESM FD+ K KL N FLG+E K +E
Sbjct: 4 DIHSHILPKEWPDLKKRFGYGGWVQLQHHSKGEAKLLKDGKVFRVVRENCWDPEVRIREMDQKGVTVQALSTVPVMFSYWAKPEDTLNLCQLLNNDLASTVVSYPRRFVGLGTLPMQAPELAVKEMERCVKELGFPGVQIGTHVNEWDLNAQELFPVYAAAERLKCSLFVHPWDMQMDGRMAKYWLPWLVGMPAETTIAICSMIMGGVFEKFPKLKVCFAHGGGAFPFTVGRISHGFSMRPDLCAQDNPMNPKKYLGSFYTDALVHDPLSLKLLTDVIGKDKVILGTDYPFPLGELEPGKLIESMEEFDEETKNKLKAGNALAFLGLERKQFE 336 The following BLAST results are available for this feature:
BLAST of TCONS_00071055 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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