TCONS_00071075 (transcript) - C. hemisphaerica

Overview
NameTCONS_00071075
Unique NameTCONS_00071075
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length318

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00071075 ID=TCONS_00071075|Name=TCONS_00071075|organism=Clytia hemisphaerica|type=transcript|length=318bp
gttcaattttttccattcaaacAACCAAGAAAAAGCATTGTGCCTGGTTC
TTTGCATTTGCAACGGGTTTGCAACAAATTATACAGgcatttagaaactt
tttaagACACTTGTTAAATCAGAAACGCTTAAAAAATTGGGCGTGCCAAA
AATTAGAAGGCGCGCAAAGGCGTGCAAAAAAGATTAAGGCGTGCAAGGAG
CGAAGGCGCGCGAGGAGCGCAGGCGCACTGGTAGCGAAGGCGCGCAAGGA
GCGCAGGTGCGCTGGGAGCAAAGGCGTGCAAGTAGCGCGGGCGCGAAGGA
GCGCTACTTTTTAGAAGG
Run BLAST on NCBI

protein sequence of TCONS_00071075-protein

>TCONS_00071075-protein ID=TCONS_00071075-protein|Name=TCONS_00071075-protein|organism=Clytia hemisphaerica|type=polypeptide|length=103bp
SIFSIQTTKKKHCAWFFAFATGLQQIIQAFRNFLRHLLNQKRLKNWACQK
LEGAQRRAKKIKACKERRRARSAGALVAKARKERRCAGSKGVQVARARRS
ATF
Run BLAST on NCBI

transcript from alignment at scaffold_58:238547..238864

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00071075 ID=TCONS_00071075|Name=TCONS_00071075|organism=Clytia hemisphaerica|type=transcript|length=318bp|location=Sequence derived from alignment at scaffold_58:238547..238864 (Clytia hemisphaerica)
CCTTCTAAAAAGTAGCGCTCCTTCGCGCCCGCGCTACTTGCACGCCTTTG
CTCCCAGCGCACCTGCGCTCCTTGCGCGCCTTCGCTACCAGTGCGCCTGC
GCTCCTCGCGCGCCTTCGCTCCTTGCACGCCTTAATCTTTTTTGCACGCC
TTTGCGCGCCTTCTAATTTTTGGCACGCCCAATTTTTTAAGCGTTTCTGA
TTTAACAAGTGTcttaaaaagtttctaaatgcCTGTATAATTTGTTGCAA
ACCCGTTGCAAATGCAAAGAACCAGGCACAATGCTTTTTCTTGGTTgttt
gaatggaaaaaattgaac

Coding sequence (CDS) from alignment at scaffold_58:238547..238864

>TCONS_00071075 ID=TCONS_00071075|Name=TCONS_00071075|organism=Clytia hemisphaerica|type=CDS|length=312bp|location=Sequence derived from alignment at scaffold_58:238547..238864 (Clytia hemisphaerica)
CTAAAAAGTAGCGCTCCTTCGCGCCCGCGCTACTTGCACGCCTTTGCTCC
CAGCGCACCTGCGCTCCTTGCGCGCCTTCGCTACCAGTGCGCCTGCGCTC
CTCGCGCGCCTTCGCTCCTTGCACGCCTTAATCTTTTTTGCACGCCTTTG
CGCGCCTTCTAATTTTTGGCACGCCCAATTTTTTAAGCGTTTCTGATTTA
ACAAGTGTcttaaaaagtttctaaatgcCTGTATAATTTGTTGCAAACCC
GTTGCAAATGCAAAGAACCAGGCACAATGCTTTTTCTTGGTTgtttgaat
ggaaaaaattga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044157XLOC_044157Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071075-proteinTCONS_00071075-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071075-exon-scaffold_58-1491911889:238547..238864TCONS_00071075-exon-scaffold_58-1491911889:238547..238864Clytia hemisphaericaexon
TCONS_00071075-exon-scaffold_58-1510915933:238547..238864TCONS_00071075-exon-scaffold_58-1510915933:238547..238864Clytia hemisphaericaexon
TCONS_00071075-exon-scaffold_58-1575043694:238547..238864TCONS_00071075-exon-scaffold_58-1575043694:238547..238864Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_58supercontigscaffold_58:238547..238864 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.325432	0.317348	0.736942	0.360491	0.438864	0.693592	0.836789	1.56678	1.09694	0.339685	1.64853	0.866944	8.00809	5.84401	11.4571	11.3036	4.88602	3.25521	12.108	8.32607	2.51717	1.84168	4.47761	1.35693	3.14462	4.05383	1.3387	4.28608	8.66891	2.57607
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00071075 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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