TCONS_00071082 (transcript) - C. hemisphaerica

Overview
NameTCONS_00071082
Unique NameTCONS_00071082
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length691

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00071082 ID=TCONS_00071082|Name=TCONS_00071082|organism=Clytia hemisphaerica|type=transcript|length=691bp
caaaaagatactATCGACGCCGTAAAAAGgtgtttgaaaacgaaagtaga
acGAGCAGAgagacaaatcaaaaaaatggtaaaataatgGCTACTGTTTT
CTTTGACAGCTCAagtcttttggaaatttattcttagaTATTAGCTCTCT
TGAAATATACTGTTCACTTGCTCACGTTCTAAAGAAAGGTTTACTTCAAT
GAGAGTCTATATAGCTGCAAATAAGGTAAGGTAAGTATAGGGAGAAATCT
AGCATCAGTTGTccattttagcttttttatgagctaaaaaatttatattt
ttctacaaaaatcatAATATATTAAATCATATAATGTACTATCATCAAAA
GATAAATATCTACTAACAAATGTATTGAGATTGATAATTTTAGATCagtt
tggactggtttggaGAGAAAAGAGAAGATATGCAGATATAAGATGATCAA
AAACTTTAAGAGATTAtaaacttcaaaattttcacCTCATGTCACAGACT
GTCCTTGACTGTCACAAGTGTGAAGGTAAGAGGTATCCTTTCTGTCTTTA
TGTATGTGTATTTACTTTTTCTGcttaattataaatttttgtttgaaact
tcacaaaaaacatttggaaatccaaatcaaatccagctaaaatctaacaa
aacaattgaataacaataatttaacaatagaaaaatcagaN
Run BLAST on NCBI

transcript from alignment at scaffold_58:367748..368438

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00071082 ID=TCONS_00071082|Name=TCONS_00071082|organism=Clytia hemisphaerica|type=transcript|length=691bp|location=Sequence derived from alignment at scaffold_58:367748..368438 (Clytia hemisphaerica)
Ntctgatttttctattgttaaattattgttattcaattgttttgttagat
tttagctggatttgatttggatttccaaatgttttttgtgaagtttcaaa
caaaaatttataattaagCAGAAAAAGTAAATACACATACATAAAGACAG
AAAGGATACCTCTTACCTTCACACTTGTGACAGTCAAGGACAGTCTGTGA
CATGAGgtgaaaattttgaagtttaTAATCTCTTAAAGTTTTTGATCATC
TTATATCTGCATATCTTCTCTTTTCTCtccaaaccagtccaaactGATCT
AAAATTATCAATCTCAATACATTTGTTAGTAGATATTTATCTTTTGATGA
TAGTACATTATATGATTTAATATATTatgatttttgtagaaaaatataaa
ttttttagctcataaaaaagctaaaatggACAACTGATGCTAGATTTCTC
CCTATACTTACCTTACCTTATTTGCAGCTATATAGACTCTCATTGAAGTA
AACCTTTCTTTAGAACGTGAGCAAGTGAACAGTATATTTCAAGAGAGCTA
ATAtctaagaataaatttccaaaagactTGAGCTGTCAAAGAAAACAGTA
GCcattattttaccatttttttgatttgtctcTCTGCTCgttctactttc
gttttcaaacacCTTTTTACGGCGTCGATagtatctttttg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044164XLOC_044164Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071082-exon-scaffold_58-1491911889:367748..368438TCONS_00071082-exon-scaffold_58-1491911889:367748..368438Clytia hemisphaericaexon
TCONS_00071082-exon-scaffold_58-1510915933:367748..368438TCONS_00071082-exon-scaffold_58-1510915933:367748..368438Clytia hemisphaericaexon
TCONS_00071082-exon-scaffold_58-1575043694:367748..368438TCONS_00071082-exon-scaffold_58-1575043694:367748..368438Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_58supercontigscaffold_58:367748..368438 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.147211	0.243978	0	0	2.48152	1.75476	1.32484	2.12622	0.558232	1.33208	0.154639	1.48497	0.293715	0.152513	0.334364	0.313971	0	0.177832	0.39122	0.736891	1.56565	2.36614	0.514251	0.982045	0.23708	0.282118	3.06417	2.62323	1.68093	1.68207
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00071082 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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