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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00071132 ID=TCONS_00071132|Name=TCONS_00071132|organism=Clytia hemisphaerica|type=transcript|length=1460bp
TCAATGGAAAAATCAATAAGGACCGgcgtaaaaaagaaaaataagatatT
TTGCTAATCAATTTAAAAATCGTTCTGCCGTCCATAGCGAAAAAACCCAG
GTAAgtccaaaatttcgaaaaacgttGAATTCTGACAGGAATCCATGTAT
AAtataaacatcaaatttggtcaacttgTTCCGAAATTATGagcttttta
agttttgcctggaaggcttatgatgacgtcatcaaaaaacttttcaactt
caacattttcaaggcatgttttatacctcaaatttcatgctctttccgct
ggcaCCATCagcttttgaatattttcaaaaaaatattttttttcccagcc
acctgatgacgtcacaaaatttGGTGTCACTGTTTGAAATTAAGTTTTGG
ACCCCCTAAGggtcatctgtgccaaatttcatgcttttttcaccatctga
agtatttttgtgccaacagacctcactattggtgtttttgattttctata
ttgatgttatgtttttatcaaaatgattttttggactttaCCTGATTTTC
GCTTTGGACGGCAGAATTGTTCACGCACCAGGATTATAATTAAGTCGTAT
TATTTATGACCACGatgataaaaatagaaacaaaCTAACTAGCAATAAAT
GTCAATAAGTTAGAATAATTACATATCATATGATACATTAAAATATCCTA
AAAGCCTCTATACACCTGCAAAATATCAAGGACAACAATCCAGAAAAATC
CTCCAGGGGGTTTATTTCTTTTGGTTAAATTGTTTcaccaaatttttaaa
atgtttaaatgTAAAAAGACGCAAAATATATTGTATTCCATATTCAGATA
TAGTACTGACGAACGTGCTATCCGCACTGGGCTCAAACTTTATTTAAATT
ATTCGTAGGCATGATTACAAATTGGATAAGCTTAATGTGCCCGAATCAAC
AAAATCTGTGGCTAAAAGTAACATTTTAACTCAGGTGCTAAAAGAATTAA
TTGAAAATAACCAAGTGTGCAAGACTGAACAGCCAAACGGATCAATTTTG
ACGACtgctagattttctttgaatttttcaaatgtaCGAGGTGTTAAAAA
TATCTACTCtcttcaaaaatctttgtaaatatagaaaatacgttaatata
gaaataaaataaaacatatctTTTAGACACGAAAACGTCcaaaatacttt
ttctttttaaaaatatcaactgggtttaaataaaaaaaatatagaagaac
aacacaaaaaaataacttctttaaaaaaaaaaagatcaacaaATATAAGA
GATGAAATTATAGATATACTATCGATTTAGCTTTCGGCAGGAGCGTGGAC
CAGTCACTTTTTCGTTTGCTGTGAGCTAATCATCCAGACCATCAAGTTCT
AAATGGaaacattgaaagttttaaGTTCACTTAAGATataataaaaactt
taaataaagc Run BLAST on NCBI transcript from alignment at scaffold_59:43656..45157- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00071132 ID=TCONS_00071132|Name=TCONS_00071132|organism=Clytia hemisphaerica|type=transcript|length=1502bp|location=Sequence derived from alignment at scaffold_59:43656..45157- (Clytia hemisphaerica)
TCAATGGAAAAATCAATAAGGACCGGCGTAAAAAAGAAAAATAAGATATT
TTGCTAATCAATTTAAAAATCGTTCTGCCGTCCATAGCGAAAAAACCCAG
GTAAGTCCAAAATTTCGAAAAACGTTGAATTCTGACAGGAATCCATGTAT
AATATAAACATCAAATTTGGTCAACTTGTTCCGAAATTATGAGCTTTTTA
AGTTTTGCCTGGAAGGCTTATGATGACGTCATCAAAAAACTTTTCAACTT
CAACATTTTCAAGGCATGTTTTATACCTCAAATTTCATGCTCTTTCCGCT
GGCACCATCAGCTTTTGAATATTTTCAAAAAAATATTTTTTTTCCCAGCC
ACCTGATGACGTCACAAAATTTGGTGTCACTGTTTGAAATTAAGTTTTGG
ACCCCCTAAGGGTCATCTGTGCCAAATTTCATGCTTTTTTCACCATCTGA
AGTATTTTTGTGCCAACAGACCTCACTATTGGTGTTTTTGATTTTCTATA
TTGATGTTATGTTTTTATCAAAATGATTTTTTGGACTTTACCTGATTTTC
GCTTTGGACGGCAGAATTGTTCACGCACCAGGATTATAATTAAGTCGTAT
TATTTATGACCACGATGATAAAAATAGAAACAAACTAACTAGCAATAAAT
GTCAATAAGTTAGAATAATTACATATCATACATTAAAATCAAAATATGTT
AATAAATCAGTATAAGTACATATGATACATTAAAATATCCTAAAAGCCTC
TATACACCTGCAAAATATCAAGGACAACAATCCAGAAAAATCCTCCAGGG
GGTTTATTTCTTTTGGTTAAATTGTTTCACCAAATTTTTAAAATGTTTAA
ATGTAAAAAGACGCAAAATATATTGTATTCCATATTCAGATATAGTACTG
ACGAACGTGCTATCCGCACTGGGCTCAAACTTTATTTAAATTATTCGTAG
GCATGATTACAAATTGGATAAGCTTAATGTGCCCGAATCAACAAAATCTG
TGGCTAAAAGTAACATTTTAACTCAGGTGCTAAAAGAATTAATTGAAAAT
AACCAAGTGTGCAAGACTGAACAGCCAAACGGATCAATTTTGACGACTGC
TAGATTTTCTTTGAATTTTTCAAATGTACGAGGTGTTAAAAATATCTACT
CTCTTCAAAAATCTTTGTAAATATAGAAAATACGTTAATATAGAAATAAA
ATAAAACATATCTTTTAGACACGAAAACGTCCAAAATACTTTTTCTTTTT
AAAAATATCAACTGGGTTTAAATAAAAAAAATATAGAAGAACAACACAAA
AAAATAACTTCTTTAAAAAAAAAAAGATCAACAAATATAAGAGATGAAAT
TATAGATATACTATCGATTTAGCTTTCGGCAGGAGCGTGGACCAGTCACT
TTTTCGTTTGCTGTGAGCTAATCATCCAGACCATCAAGTTCTAAATGGAA
ACATTGAAAGTTTTAAGTTCACTTAAGATATAATAAAAACTTTAAATAAA
GC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00071132-exon-scaffold_59-1575043694:44481..45157 | TCONS_00071132-exon-scaffold_59-1575043694:44481..45157 | Clytia hemisphaerica | exon |
| TCONS_00071132-exon-scaffold_59-1575043694:43656..44438 | TCONS_00071132-exon-scaffold_59-1575043694:43656..44438 | Clytia hemisphaerica | exon |
| TCONS_00071132-exon-scaffold_59-1510915933:44481..45157 | TCONS_00071132-exon-scaffold_59-1510915933:44481..45157 | Clytia hemisphaerica | exon |
| TCONS_00071132-exon-scaffold_59-1510915933:43656..44438 | TCONS_00071132-exon-scaffold_59-1510915933:43656..44438 | Clytia hemisphaerica | exon |
| TCONS_00071132-exon-scaffold_59-1491911889:44481..45157 | TCONS_00071132-exon-scaffold_59-1491911889:44481..45157 | Clytia hemisphaerica | exon |
| TCONS_00071132-exon-scaffold_59-1491911889:43656..44438 | TCONS_00071132-exon-scaffold_59-1491911889:43656..44438 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_59 | supercontig | scaffold_59:43656..45157 - |
Blast
The following BLAST results are available for this feature:
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