TCONS_00071134 (transcript) - C. hemisphaerica

Overview
NameTCONS_00071134
Unique NameTCONS_00071134
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2171

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00071134 ID=TCONS_00071134|Name=TCONS_00071134|organism=Clytia hemisphaerica|type=transcript|length=2171bp
tcaaaagcctttttcaaggctaaattcagttagtactaactgtactaagt
gtaccaaggtggtggtgttactaacttcttccgagaaagcagttagtagg
catcatgtcttgtactaactgcttcaccccccctGATTGAATGACTGAAA
CTTGAATTTGGGCAGGgattcaattttggaaacacagaattttgatgaat
ttagtattttttaacttgaatttGATCCCTAAAAGAATAATCCATTTCAG
GTTTCTTTTAgcaaattatgatttttggttTTTTCAAGTTCGACCTTTAT
TTCAATCCTTGCATCTCTTTAATTAGTTGGAAGATAATGTAATTAACAAT
TGATAATTAATGCTGATGATTGTTTGTAGATTATTTGACACCAATTAATA
CTCAAGGTCTGATGGTTATTTAATACAATCCATTAAAATTAGTCATTGAT
AGCATATTAATTGTGATCAATAGTCAATATTATTGTTGAACTATGTCTGC
TATGTTTCTTCTTGTCATTTACCTTAAGTTCAAGTCAAGAACTGACCGAT
GTAGGATTACAAAACAATGGATACTTTATAGATTCCTTGTTAGATATTTA
AATTTTGTAGAAGAATTGTGTTTACAAGAttcattaaatattttgatgtt
taaACCTTTTTATTTGTTTCTCTTAGACCAAAAAAATGGCAGccataaga
aaaaaattagtaatTGTTGGTGATGGTGCTTGTGGTAAAACTTGTTTATT
GATTGTATTTTCAAAAGATCAATTTCCAGAAGTCTATGTACCCACTGTTT
TCGAAAATTATGTTGCAGATATTGAAGTAGATGGTAAACAAGTTGAATTA
GCTTTATGGGATACCGCAGGACAAGAAGATTACGATAGGCTTCGACCATT
ATCATATCCAGATACAGATGTCATTTTAATGTGCTTTTCCATAGACTCAC
CAGACAGTTTAGAAAATATTCCAGAGAAATGGACTCCTGAAGTAAAACAC
TTTTGCCCAAATGTACCTATTATTTTAGTTGGTAACAAAAAAGATTTACG
AAATGATAATAATACTATTCACGAGCTTTCGAAAATGAAACAAGAGCCAG
TTAAAATTGAAGATGGCAAAGCTATGGCTGAAAAAATTAGTGCATTTTCA
TACCTGGAATGTTCTGCCAAGACCAAAGATGGTGTTCGTGAAGTTTTTGA
AACTGCAACCAGAGCTGCATTACAAGTAAGGAAGAAGAAAAAGGGAAAGT
GTGCTCTGCTATAAAATGGGACTTATCTATTATTAGACCTGTTCCGTCAT
AACATTTGATAATGTTAGGAatatgaaatttgaattttattacCATGTGA
GAGCAACTCAAAAATTAGTACTATTGCATGcgttatttttatattttgat
caTAGAGAGGGGGTTGTTCAAATTGCATGTGGCAAGAATAGTCCTGACAA
ATGCATATTTTCAAATCCCCCGAGAAACCCTGTAAATTATTTAGCGAAAT
TATACATGAACCTTAGTGATTATTTGAAATCAGAATTTTCTTGCcagttt
ttattattattatcattgttATTTTTGGAAttaacaaacaacaaaaatat
aaaagctctcttttaaaacaatttcatttgTTTTGCAATCGTCTTGCGAC
GATTTCATGCTAGTAGTCCTAGCTAGTACAAGTACTCTTTCTTTAAATTt
cactaaaagaaaaaagaatatgaaCTTATTTATATAAATTCTcgtatttt
ggaaaaaattttattaGTATCAGTTGGATAACATTAGAAGGAGTAACTTA
TCCCTCAAAGAAATAATGCGTTCATAAAAATTACATATTtgtatttaaac
tttttttttcaaagaaatttactCCCGTTTCTGATGTAACTACTTTAAAA
TATTGTTTCagaataaaaattttctcaatttcttatatttcaagaccctt
tttatatttgagtcaTTTTAAATCATTTAAACTttgactaccttaaggga
agaaattttcgcggaagaaattttcgcggaatttaatttcgcgaatttgg
gtgtaatttgcgaaattaaattccgcgaaacacaccaaaattgttaaatc
gcgaaattaaattccgcgaaattcgattttttttcttcttcttttattgt
gttgtttttgaccaggtatta
Run BLAST on NCBI

protein sequence of TCONS_00071134-protein

>TCONS_00071134-protein ID=TCONS_00071134-protein|Name=TCONS_00071134-protein|organism=Clytia hemisphaerica|type=polypeptide|length=192bp
MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDG
KQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWT
PEVKHFCPNVPIILVGNKKDLRNDNNTIHELSKMKQEPVKIEDGKAMAEK
ISAFSYLECSAKTKDGVREVFETATRAALQVRKKKKGKCALL
Run BLAST on NCBI

transcript from alignment at scaffold_59:25295..27465

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00071134 ID=TCONS_00071134|Name=TCONS_00071134|organism=Clytia hemisphaerica|type=transcript|length=2171bp|location=Sequence derived from alignment at scaffold_59:25295..27465 (Clytia hemisphaerica)
taatacctggtcaaaaacaacacaataaaagaagaagaaaaaaaatcgaa
tttcgcggaatttaatttcgcgatttaacaattttggtgtgtttcgcgga
atttaatttcgcaaattacacccaaattcgcgaaattaaattccgcgaaa
atttcttccgcgaaaatttcttcccttaaggtagtcaaAGTTTAAATGAT
TTAAAAtgactcaaatataaaaagggtcttgaaatataagaaattgagaa
aatttttattctGAAACAATATTTTAAAGTAGTTACATCAGAAACGGGag
taaatttctttgaaaaaaaaagtttaaatacaAATATGTAATTTTTATGA
ACGCATTATTTCTTTGAGGGATAAGTTACTCCTTCTAATGTTATCCAACT
GATACtaataaaattttttccaaaatacgAGAATTTATATAAATAAGttc
atattcttttttcttttagtgaAATTTAAAGAAAGAGTACTTGTACTAGC
TAGGACTACTAGCATGAAATCGTCGCAAGACGATTGCAAAAcaaatgaaa
ttgttttaaaagagagcttttatatttttgttgtttgttaaTTCCAAAAA
TaacaatgataataataataaaaactgGCAAGAAAATTCTGATTTCAAAT
AATCACTAAGGTTCATGTATAATTTCGCTAAATAATTTACAGGGTTTCTC
GGGGGATTTGAAAATATGCATTTGTCAGGACTATTCTTGCCACATGCAAT
TTGAACAACCCCCTCTCTAtgatcaaaatataaaaataacgCATGCAATA
GTACTAATTTTTGAGTTGCTCTCACATGgtaataaaattcaaatttcata
tTCCTAACATTATCAAATGTTATGACGGAACAGGTCTAATAATAGATAAG
TCCCATTTTATAGCAGAGCACACTTTCCCTTTTTCTTCTTCCTTACTTGT
AATGCAGCTCTGGTTGCAGTTTCAAAAACTTCACGAACACCATCTTTGGT
CTTGGCAGAACATTCCAGGTATGAAAATGCACTAATTTTTTCAGCCATAG
CTTTGCCATCTTCAATTTTAACTGGCTCTTGTTTCATTTTCGAAAGCTCG
TGAATAGTATTATTATCATTTCGTAAATCTTTTTTGTTACCAACTAAAAT
AATAGGTACATTTGGGCAAAAGTGTTTTACTTCAGGAGTCCATTTCTCTG
GAATATTTTCTAAACTGTCTGGTGAGTCTATGGAAAAGCACATTAAAATG
ACATCTGTATCTGGATATGATAATGGTCGAAGCCTATCGTAATCTTCTTG
TCCTGCGGTATCCCATAAAGCTAATTCAACTTGTTTACCATCTACTTCAA
TATCTGCAACATAATTTTCGAAAACAGTGGGTACATAGACTTCTGGAAAT
TGATCTTTTGAAAATACAATCAATAAACAAGTTTTACCACAAGCACCATC
ACCAACAattactaatttttttcttatggCTGCCATTTTTTTGGTCTAAG
AGAAACAAATAAAAAGGTttaaacatcaaaatatttaatgaaTCTTGTAA
ACACAATTCTTCTACAAAATTTAAATATCTAACAAGGAATCTATAAAGTA
TCCATTGTTTTGTAATCCTACATCGGTCAGTTCTTGACTTGAACTTAAGG
TAAATGACAAGAAGAAACATAGCAGACATAGTTCAACAATAATATTGACT
ATTGATCACAATTAATATGCTATCAATGACTAATTTTAATGGATTGTATT
AAATAACCATCAGACCTTGAGTATTAATTGGTGTCAAATAATCTACAAAC
AATCATCAGCATTAATTATCAATTGTTAATTACATTATCTTCCAACTAAT
TAAAGAGATGCAAGGATTGAAATAAAGGTCGAACTTGAAAAaaccaaaaa
tcataatttgcTAAAAGAAACCTGAAATGGATTATTCTTTTAGGGATCaa
attcaagttaaaaaatactaaattcatcaaaattctgtgtttccaaaatt
gaatcCCTGCCCAAATTCAAGTTTCAGTCATTCAATCagggggggtgaag
cagttagtacaagacatgatgcctactaactgctttctcggaagaagtta
gtaacaccaccaccttggtacacttagtacagttagtactaactgaattt
agccttgaaaaaggcttttga

Coding sequence (CDS) from alignment at scaffold_59:25295..27465

>TCONS_00071134 ID=TCONS_00071134|Name=TCONS_00071134|organism=Clytia hemisphaerica|type=CDS|length=579bp|location=Sequence derived from alignment at scaffold_59:25295..27465 (Clytia hemisphaerica)
TTATAGCAGAGCACACTTTCCCTTTTTCTTCTTCCTTACTTGTAATGCAG
CTCTGGTTGCAGTTTCAAAAACTTCACGAACACCATCTTTGGTCTTGGCA
GAACATTCCAGGTATGAAAATGCACTAATTTTTTCAGCCATAGCTTTGCC
ATCTTCAATTTTAACTGGCTCTTGTTTCATTTTCGAAAGCTCGTGAATAG
TATTATTATCATTTCGTAAATCTTTTTTGTTACCAACTAAAATAATAGGT
ACATTTGGGCAAAAGTGTTTTACTTCAGGAGTCCATTTCTCTGGAATATT
TTCTAAACTGTCTGGTGAGTCTATGGAAAAGCACATTAAAATGACATCTG
TATCTGGATATGATAATGGTCGAAGCCTATCGTAATCTTCTTGTCCTGCG
GTATCCCATAAAGCTAATTCAACTTGTTTACCATCTACTTCAATATCTGC
AACATAATTTTCGAAAACAGTGGGTACATAGACTTCTGGAAATTGATCTT
TTGAAAATACAATCAATAAACAAGTTTTACCACAAGCACCATCACCAACA
attactaatttttttcttatggCTGCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044216XLOC_044216Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071134-proteinTCONS_00071134-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071134-exon-scaffold_59-1491911889:25295..27465TCONS_00071134-exon-scaffold_59-1491911889:25295..27465Clytia hemisphaericaexon
TCONS_00071134-exon-scaffold_59-1510915933:25295..27465TCONS_00071134-exon-scaffold_59-1510915933:25295..27465Clytia hemisphaericaexon
TCONS_00071134-exon-scaffold_59-1575043694:25295..27465TCONS_00071134-exon-scaffold_59-1575043694:25295..27465Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_59supercontigscaffold_59:25295..27465 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
174.475	170.781	266.376	281.017	229.986	174.433	228.717	238.304	139.07	138.495	123.995	83.7144	110.366	88.5517	85.1959	84.4413	106.625	116.303	75.2184	83.9347	179.569	171.975	163.694	167.772	111.313	149.827	191.807	168.158	176.71	182.577
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001806Small_GTPase
IPR005225Small_GTP-bd_dom
IPR003578Small_GTPase_Rho
IPR027417P-loop_NTPase
Vocabulary: Molecular Function
TermDefinition
GO:0005525GTP binding
GO:0003924GTPase activity
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
Vocabulary: Biological Process
TermDefinition
GO:0007264small GTPase mediated signal transduction
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007264 small GTPase mediated signal transduction
cellular_component GO:0005622 intracellular
molecular_function GO:0003924 GTPase activity
molecular_function GO:0005525 GTP binding
Blast
[Close]
BLAST of TCONS_00071134 vs. Swiss-Prot (Human)
Match: RHOA (Transforming protein RhoA OS=Homo sapiens GN=RHOA PE=1 SV=1)

HSP 1 Score: 350.903 bits (899), Expect = 6.162e-116
Identity = 170/190 (89.47%), Postives = 177/190 (93.16%), Query Frame = 2 
Query:  686 MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDNNTIHELSKMKQEPVKIEDGKAMAEKISAFSYLECSAKTKDGVREVFETATRAALQVRK-KKKGKC 1252
            MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRND +T  EL+KMKQEPVK E+G+ MA +I AF Y+ECSAKTKDGVREVFE ATRAALQ R+ KKK  C
Sbjct:    1 MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQARRGKKKSGC 190
The following BLAST results are available for this feature:
BLAST of TCONS_00071134 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RHOA6.162e-11689.47Transforming protein RhoA OS=Homo sapiens GN=RHOA ... [more]
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