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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00071143 ID=TCONS_00071143|Name=TCONS_00071143|organism=Clytia hemisphaerica|type=transcript|length=601bp
GTTACGCAAAGCAATTAGGCGGTGTTCCGCGAGAGTACATATATTTTCCA
GGCTAAACTCAGCGCTATAATGTAGAGGGATCGACAAGGATCGTCTGTCG
GCTAGCATACAATTATCTATCCTCTAGCAAAGCCGATCTAAGCCATATGT
TGATATATATGGCTGAAGACCGTATCTTGTTATTGTCTGTATTTCGTATA
GTCCTACCTACATAGACTATCTTCAACTCAACTCAACGTGGAGTGTTGGT
TCAACGTGATCTCCTttcattcagtctttttctcaCAAAGACTGAGAATT
AAAGAGTTCAAGAAGTAAAGAGGATAAATCAAGATTTTACTGTCACTGAC
TGCTGCTGCCATTCATAAAGtTTTGGACCATCATCATCCATATACATCAA
GACTGTTATCGTACATCATATCCAGACTGATTGGTTCCCACTGATTGATT
GATACTCAATCTTAAGggttCATCAAGTCCACATCATTCAGTGTATATAG
CTACTCTGGTCAATCTGGATTTACATTAGATAGCTTGGTTATACAAAGCT
AACTTGGATTTACACAGTTAACTCAGATTTAAAGGATTCCCCTCGATTCN
N Run BLAST on NCBI transcript from alignment at scaffold_6:58107..61638+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00071143 ID=TCONS_00071143|Name=TCONS_00071143|organism=Clytia hemisphaerica|type=transcript|length=3532bp|location=Sequence derived from alignment at scaffold_6:58107..61638+ (Clytia hemisphaerica)
GTTACGCAAAGCAATTAGGCGGTGTTCCGCGAGAGTACATATATTTTCCA
GGCTAAACTCAGCGCTATAATGTAGAGGGATCGACAAGGATCGTCTGTCG
GCTAGCATACAATTATCTATCCTCTAGCAAAGCCGATCTAAGCCATATGT
TGATATATATGGCTGAAGACCGTATCTTGTTATTGTCTGTATTTCGTATA
GTCCTACCTACATAGACTATCTTCAACTCAACTCAACGTGGAGTGTTGGT
TCAACGTGATCTCCTttcattcagtctttttctcaCAAAGACTGAGAATT
AAAGAGTTCAAGAAGTAAAGAGGATAAATCAAGATTTTACTGTCACTGAC
TGCTGCTGCCATTCATAAAGGTAAATCTCTATTGTGTGCCAGTAGTATCA
TAAGAATATTGCTATTGGCCTTTAGCAACAAGACACTCTGCGATTGTGCG
AAATACAAACAATCTGCAAGGTTAATTCTCAAATTAAGGGCTAGGTAGGA
GGGGTAAGAATCAGGCAATTCCACTTACAAAAAATGCAGCGCAGATCACT
ATCAGGTTGTTTGGCGTCGGCTTTGACCAGACGATTtcaatcgaacagaa
tcgacaatcgaaccagtcgaaccaaatcaaacgcaatcgaccgattgaaa
ttcgattgtcgaattttcagattcgattgatattcgattgcgttcgattg
atgttcgattgcgttcgatcgtcgattcattgacccccggattgttcatc
gcataatttctacgggaaatcgaaagtaatttcattgggcttgtgatatt
tgagagcttggatgttgggggaagctgcaagaataaagccagccGATCTC
AATCGGacggaatcaacgatcgaaccagtcgaacaataattgaaccaatc
gaatattaccaagaattttgacgttcaattgaaatcggtcgattgcattg
ttcgatttggttcgattggttcgatcgtcgattccgttcgattgagaccG
CCTGgctttgattttgaaaacagCTATTCTATCTATTACTTCCGTCTGCC
AATAATAGGTCGGTCAGTCGATACTCAATCGAACAGAACCGATGATCGAA
CCAGATAAAACGCAAGCGAACgattaaaattttattgttgaacgcaattg
aatttcaatagaATATTAGGCCGATGGAATTTAATGCTATGTTTACCGTA
AGCCGCCCGCATGTCAAAAAACTGCCGCGCCAAGTTGccattattttgtt
attttggcgcttcatcaagattttgaaagatcaaaacaaacggtCCGGCA
AATATCCGGTTAAAAACGANAAAACTGCCGCGCCAAGTTGccattatttt
gttattttggcgcttcatcaagattttgaaagatcaaaacaaacagtcCG
GCAAATATGCGGTTAAAAACGAACCCGTACGGACCTACCATCTCTTTAAA
AGTGTGcttctttaatttttataattatggagatgattttttttgctcgc
aACTTATTGAGAATTTTCTCcctaaaataatgaataatgaaaacttggTC
GCATCGAATTCTGAAGATCGTCATTACGATAAACATATCATTAAATTCCA
TCAGCCTTACCCCAATTTTCGGATTCGTTTgttgttcgattgagattcga
ttgcgttcgattgggTTTGATTGCATTCGATTCAATCACTCGAACgaaaa
tctcaatcaaacgaatCAAATATTACCTAGAATTTGGTCGTtggattgag
atttgattgcgttcgacaataaaatttcaattccGTTCAATAAAAATCGT
CTGGTCgaaatggagaaaaaatttttacttgaggtagcaaaaacttgaaa
ttcaccAATTTCAGTTCTAACCAAAATTGATTCTTGCCgtcaatcattaa
aaaaaaggtAATAGAAAGGGAAGAatcatatttgtttttctttttgtaca
gtTTTGGACCATCATCATCCATATACATCAAGACTGTTATCGTACATCAT
ATCCAGACTGATTGGTTCCCACTGATTGATTGATACTCAATCTTAAGGTg
agtttgaatttgattttcttcaggATTTATCATTAAAAGGCTTGGTAACC
TAATGACTTTAAGTGAAAAATCAAGTTGTGTATTACATTTACTGCAAAAT
CTTTGTGAGGTTGGGGGAAGCGTGGTAAAGAGCtgataaaatatgaaaat
tggctaaaagATTCTTTCCACGGTCCTTAGTAAGCCctccaaatattttt
gagaaataacaTTCCAAATTCAAGATATGNTTCTTTGTGAGGTTGGGGGA
AGCGTGGTAAAGAGAAGCTCATTGTTGGTTATAGTCTAGAGAGAGAagga
tttctttttttgatttgtaattttttgtcctttttgtttgaaacttttaa
agggataaccagataaaatatgaaaattggctaaaagATTCTTTCCACGG
TCCTTAGTAAGCCCTCCAAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNTATGGAAGGAATCTTTGggctgaattttattttttatctggttatc
cctttaaggTAGCTGCCCTGGAAATGAGATTTTCACTTGTATTTGTAAAA
CATCATAATCAGATTTCATCTCGGGTTCTTTATGTTGTGCGAAAAAATTG
TGACCTATAAATGCTTGCATGCcgcaattttcaacaaaaagcaaGTATCT
TCTTAACAGGTGGACATAATTATGAAAGTCTTCCAGAACTTGGAACAAGC
TTACGCTGCACTTGAGCTTTACGATTTATGAACATGGTAGTATACTTCAG
TTGAACGCGACTGTTTGGgtaatttcgtttttgtttttatttttcagggt
tCATCAAGTCCACATCATTCAGTGTATATAGCTACTCTGGTCAATCTGGA
TTTACATTAGATAGCTTGGTTATACAAAGCTAACTTGGATTTACACAGTT
AACTCAGATTTAAAGGATTCCCCTCGATTCNN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00071143-exon-scaffold_6-1491911889:58107..58476 | TCONS_00071143-exon-scaffold_6-1491911889:58107..58476 | Clytia hemisphaerica | exon |
| TCONS_00071143-exon-scaffold_6-1510915933:58107..58476 | TCONS_00071143-exon-scaffold_6-1510915933:58107..58476 | Clytia hemisphaerica | exon |
| TCONS_00071143-exon-scaffold_6-1575043694:58107..58476 | TCONS_00071143-exon-scaffold_6-1575043694:58107..58476 | Clytia hemisphaerica | exon |
| TCONS_00071143-exon-scaffold_6-1491911889:60058..60153 | TCONS_00071143-exon-scaffold_6-1491911889:60058..60153 | Clytia hemisphaerica | exon |
| TCONS_00071143-exon-scaffold_6-1510915933:60058..60153 | TCONS_00071143-exon-scaffold_6-1510915933:60058..60153 | Clytia hemisphaerica | exon |
| TCONS_00071143-exon-scaffold_6-1575043694:60058..60153 | TCONS_00071143-exon-scaffold_6-1575043694:60058..60153 | Clytia hemisphaerica | exon |
| TCONS_00071143-exon-scaffold_6-1491911889:61504..61638 | TCONS_00071143-exon-scaffold_6-1491911889:61504..61638 | Clytia hemisphaerica | exon |
| TCONS_00071143-exon-scaffold_6-1510915933:61504..61638 | TCONS_00071143-exon-scaffold_6-1510915933:61504..61638 | Clytia hemisphaerica | exon |
| TCONS_00071143-exon-scaffold_6-1575043694:61504..61638 | TCONS_00071143-exon-scaffold_6-1575043694:61504..61638 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_6 | supercontig | scaffold_6:58107..61638 + |
Blast
The following BLAST results are available for this feature:
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