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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00071145 ID=TCONS_00071145|Name=TCONS_00071145|organism=Clytia hemisphaerica|type=transcript|length=1468bpRun BLAST on NCBI protein sequence of TCONS_00071145-protein >TCONS_00071145-protein ID=TCONS_00071145-protein|Name=TCONS_00071145-protein|organism=Clytia hemisphaerica|type=polypeptide|length=322bp MEQYAVKKIENCWCCYRDRQMFRLLKQAISTADHSFTAEVMRKISPNEAERun BLAST on NCBI transcript from alignment at scaffold_6:123339..148791+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00071145 ID=TCONS_00071145|Name=TCONS_00071145|organism=Clytia hemisphaerica|type=transcript|length=25453bp|location=Sequence derived from alignment at scaffold_6:123339..148791+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_6:123339..148791+ >TCONS_00071145 ID=TCONS_00071145|Name=TCONS_00071145|organism=Clytia hemisphaerica|type=CDS|length=7752bp|location=Sequence derived from alignment at scaffold_6:123339..148791+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00071145 vs. Swiss-Prot (Human)
Match: CX058 (Putative uncharacterized protein CXorf58 OS=Homo sapiens GN=CXorf58 PE=2 SV=2) HSP 1 Score: 189.504 bits (480), Expect = 7.607e-55 Identity = 100/254 (39.37%), Postives = 149/254 (58.66%), Query Frame = 2
Query: 59 IENCWCCYRDRQMFRLLKQAISTADHSFTAEVMRKISPNEAELLKDPVFKTKIRFRFSGEEFPPRIVFKVFIKTDGFGVKYLCGKKVIKPASQAASDSCSMMGNRKFLDQILKDLCLEEQKGVQNETELSSMKDYMKYISTLDETMADNGGRANTWRTLTLDVIPRHHIISDVLVYLQHGTKSENL-------------TEFWREHLRTTSPCVPLTQTQQVEYIKLLENRRNQEPGRRSKKARERVAKMKKMY 781
I+ W + ++ +FRLLK AI A+ T E+++K++P EA+L+KDP + KIRFRF GE FPP IVFK+F+ TDG G KY GK V+ P+S+A D+C +MG RKF I++D + + V + ++ +M+DY++Y S DE A +GGR N+WR L L+ IPR ++ D++ Y + G S L E + LR S T Q Y + + + GRRSK+A+ +V KM+K+Y
Sbjct: 49 IQRAWLSHTNKMIFRLLKHAICAAEFYVTHEILKKVAPLEAKLIKDPTMQCKIRFRFRGETFPPFIVFKIFLHTDGHGYKYFSGKNVLMPSSKAVDDACKLMGERKFHRIIMEDERIFPKSKVTDIMDVVTMQDYVQYRSFFDEAPAFSGGRNNSWRKLNLENIPRTMLMYDIVHYSESGVISNRLRNEMKFLLQRPVTQEIHKHQLRIVSEIRGPYLTVQPLYRPYKQQNQVKFLGRRSKQAQMKVEKMRKVY 302 The following BLAST results are available for this feature:
BLAST of TCONS_00071145 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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