TCONS_00071146 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00071146
Unique Name	TCONS_00071146
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1143

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at scaffold_6:123344..129654+

transcript sequence

>TCONS_00071146 ID=TCONS_00071146|Name=TCONS_00071146|organism=Clytia hemisphaerica|type=transcript|length=1143bp
GTTAagtttgataaaagtttaaaaaaaatatggaaCAGTATGCTgttaaa
aagattgaaaattgcTGGTGTTGCTATCGGGACCGTCAAATGTTTCGACT
TTTAAAGCAAGCTATATCAACTGCTgaTCATTCTTTCACTGCAGAAGTGA
TGCGAAAAATCAGTCCAAATGAAGCAGAATTGTTGAAAGACCCAGTATTT
AAGACCAAGATTCGATTCAGGTTTTCTGGTGAAGAATTTCCACCTCGGAT
TGTGTTCAAAGTATTCATAAAGACTGATGGATTTGGAGTCAAATATCTAT
GCGGAAAGAAGGTCATAAAGCCTGCTTCTCAGGCAGCATCAGATTCGTGT
AGCATGATGGGTAATCGAAAGTTTCTTGATCAAATTCTTAAAGATTTGTG
TTTGGAAGAACAAAAAGGTGTTCAAAATGAAACAGAACTGTCCAGTATGA
AAGATTACATGAAGTACATTTCAACACTGGACGAAACGATGGCAGACAAT
GGTGGAAGAGCAAACACTTGGAGAACATTGACTCTTGATGTAATACCACG
ACATCACATCATATCCGACGTATTAGTGTATCTACAACACGGAACTAAAT
CAGAAAATCTGACTGAATTTTGGAGGGAACACCTGAGAACAACTTCTCCT
TGTGTACCGCTGACACAAACACAACAAGTGGAATATATAAAGCTGCTAGA
AAACAGAAGAAATCAAGAGCCCGGAAGGCGAAGTAAGAAAGCGAGAGAAA
GAGTTGCCAAGATGAAGAAGATGTATCAACAAAATGATACTGAATTGCAG
TCTCCGCCCACATTGCCGCCATTTTCGCCGCCCGCCAATCACCACGATGA
CCATTTTAACAATacaaacgatgacgtcatcgttccATCATCATTCATAC
GAAATGAGGAAATCGATTTTGAAAATGAGCTTTGGGAAGAGGAAGGGAAC
ATGCTGTTTGAATGGACGAAGAATTTATCACTTACGAATCTTGCTTCTTG
AGCAAGACTTTATGACTTTTCAAAATACTTAATGAAAGCTCCGAACAGTG
CCCCGTAAGTTggatatttcttaaattttgaattCAGAACAGCTAATACT
ATGCCTAAACTGAGAATTTCTAGTAATGTCTTTTTGAGCAAAC

Run BLAST on NCBI

transcript from alignment at scaffold_6:123344..129654+

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00071146 ID=TCONS_00071146|Name=TCONS_00071146|organism=Clytia hemisphaerica|type=transcript|length=6311bp|location=Sequence derived from alignment at scaffold_6:123344..129654+ (Clytia hemisphaerica)
GTTAagtttgataaaagtttaaaaaaaatatggaaCAGTATGCTgttaaa
aagattgaaaattgcTGGTGTTGCTATCGGGACCGTCAAATGTTTCGACT
TTTAAAGCAAGCTATATCAACTGCTGTGAGTTACCTTAACTTCAGATATT
CAATGAATTTACTTACTCTGTACAGCCCAATCGCCTTTGTACTGTAAATC
AGTcctatatctgccatctttgatcatAGTTTTTCTGAAAGTGGTACTCG
CAAAGAAACCTTTTCAGTGTTGGAAATTAACGTTGAACGGTGCTACATAA
TTTTATCAAGTTACTGTTTAAATGGAAATTAATATGCTGTAGCCTTAAAA
TTTTTCAcaacagggctcgaaataacggtcagacatcggacattgtccga
cccaattgctgaaatgtccgacccaaatcgattctagtcggacatcatgt
ccgacccaattacTTTCAGTGCCTTcgaaaaatttgtcagatgcgttatg
aaatttccaaaagaaattgtaatttacatagaattagtaacttttttatt
tacacacaaaaactctcaaagttgcgatcattcacaggaaaaagtcatca
gATCACACGGGTGAGAAAACTTAAATTCCGACgccgtaattttcaaaaat
caatttttgcgtGTGATTTTATAAACTGATAAGGTGTGATTGTTTTGACA
GTGTGATTTCCGATATCACACTGCggaatttttcaaatagttatttttat
ttttttaaattcggcGTGTGAAATCCAATTCAACACTTTTAAACTTCACT
GAAAAGGCTTTATCGAAATGACACGTGTGATTTCTAATTTCCGCAAGCAA
ATAAAGTTTTTCAGCATGTTGTACACTTTAAATTTTCGGCgtgtgaaatc
caatttaacacTTTAAAACTTCACTGAAAAGCCTTATCAAAATCTCACGT
GTTAATTCTAATTTCCGCAggcaaataaaacttttcagtaTGTTGTACAC
TATAAATTTTCGGCgtgtgaaatccaatttaacacTTTGTCAAACACTGG
CAACTATAGTCCAAGAAGTATAAAACTTACACTACANNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAAAC
AAGAAATCGCAGTCATTAGTTCCCACGGGTGGGAAAGTCAAATTAACACG
GTGGGAAGGTACAATTCCCACCCTTGTACTACGCATGCGTaaaaaaaacc
acaagtgaaaattgGGCCAAAACTGTTCAGATTGCATTCAAATTATAACA
TTATAAGGGTGTATTCGATCAGTATGTAACACAACGCTAAAGGCGAGGCG
TCCCGCAAGGGCGGCCTCATTCGTtcgcaagggctcagtggatcggtgag
acgggtTTGAAGTCATTAAATTGGCTCTCTAGTGCAGCTCCACTGTTGTG
GcaaaagtgccgggattctcaaagtagcgcaagtatATGACAGAACGAAT
TGGAGCTATCGAGCCAATGCTCACgaatgatcgaatacatttaacaatta
ttttatCAAATACAAATCAAAGCCATTTTCCAAAAACTTGGTGGGGAATC
AAAATTTCTGCGTGTGGTTTTTGATAAGATAAGCGAGTGTAAAATGTTAT
CCGACGTGGGATTTTCAATTTAACACGCGAGGAGAGAGGGCCTGAAGTAC
GAAATTCGACGTGGGATTTTCGATTTAACACGTGGGATTTTCGATTTAAC
ACGTGTATTGTTCGATTCAGCACACAATGTTTAAAGCTTGTGATCCTGCA
TTAAACATGTCGGAAATTCAATTATACACGTGTGATTTTGAGTGGTGTGA
TTTTGCGTTTCCCACCGGCGTAAAAACGAACCGATTCCCACGCGTGGGAT
AGCAGTGTGAAATGTATACTTTCACACCGTGTGATTTTCACTTTAACACC
GGTGtgatttgttgactttttcctgtgattagtgttagatattcattttg
tgtgatgctttttctcaacaaatgaaaGCATGCTTCAAGTAAAAATCATG
GGCTTCTGACCATTAATTGACATTTGTTTAGATTCTTCGTGATCAATGTA
aaattctatcagaagcttGTATTGGACTTGAAGTATAccccacataaaaa
tcaatcggacatgtcctacccattttactttaaaagccttGGGACATGTC
Caacccaaatcaatttttgatcggacagtgtgtccgaccacctaaatatc
gttatttcgagccctgtcacaatgaaaaagatcaaaatgaTTACTTCAAT
TTCTTTTGAGATTTTGTCCCGTTGCATTTTTTATTAAAGCagagaaatga
ttttttctttcaggaTCATTCTTTCACTGCAGAAGTGATGCGAAAAATCA
GTCCAAATGAAGCAGAATTGTTGAAAGACCCAGTATTTAAGACCAAGATT
CGATTCAGGTAGCAAATCCAATATACTATAGAGATGCAGCAAAAACTATT
ATAGTTATATACAAAGTgtttaaagaacattttgagcCAGATAAAATATC
GAGAAATTAATAACTGAATTCAAATTGTGAGAGTGTTTCAAGGGGGAATC
TTCCGTGCAATGTGTACTATGTGTATACTTTATGCAAATACTTAATATTA
GTATTATTTGTATTTGAGTTTTTGGCTGCCCATTAATCCCTAAATTTTCG
TCCATATATACAAAACCTAGTTGCAATTTCAGGTTTTCTGGTGAAGAATT
TCCACCTCGGATTGTGTTCAAAGTATTCATAAAGACTGATGGATTTGGAG
TCAAATATCTATGCGGAAAGAAGGTCATAAAGCCTGCTTCTCAGGTAAAG
TATCTCCTGATCATTCTTTTCTCAATTTGGATCAGACTTTTTGAATATCT
TACCTTTCTCAGACTGTGTAGGAAGGTAGAAAGTTCGGCTACAGTACTGC
GTGCAAAGTCTTAGATTAAATCCCCGGCCGGTTCATACCAACGACTTCGA
AATTAGTATAAAAATGTTCCTTGATGTCTCTCTACTTGGtgttcagcaat
taagagaagtaTAGGGTAATTACAGCAATCCAGGGAGAGAGACTTAGTTA
CTTTGATAGAATCTAATGGACTTTACTAGAGacgaaacaaaaacattcat
ATATCATTATGGAAGATACGATATATCATTATGAAAAAAGTGGGTCCCCT
TGCTTCCATGAGTCAATAGCAATCTTACCCAAAAAAAAAGGAGATGTATT
GAATTGACATTGTCGAAAGcaaatgaaaagttttaaaaaatcttctGAGA
ACCTGGCACAGAGTCCTGGATTTACAGGTAAACGGAGCAAGAAAAAATTA
AACTGTTGACATTAGCCCACCGAGTTGAAGAATCCTAGCCGTACTGGaaa
gaaacataaaaataaagtttttctacTTTTCCTTTAGGCAGCATCAGATT
CGTGTAGCATGATGGGTAATCGAAAGTTTCTTGATCAAATTCTTAAAGAT
TTGTGTTTGGAAGAACAAAAAGGTGTTCAAAATGAAACAGAACTGTCCAG
TATGAAAGATTACATGAAGGTCAGTGGTTTATTATTATCGGTCATTTTAC
TTCaggtaaaataaaataaaaacaaatcagAAAAATGGCATATTGTTCCT
TGATActcaaagaaaagcaaaaagtttGGTTTTTAAAAAAGCTATTTCTC
AAACTAAACTTAGCACAAAGTCTTTTTTCGGACTTGCTTTCGTTTTATTT
TATCAGTCAATAGAAAAAAAGATGCTGCTCTGGGCAACATTTGGTAAACT
AGTGAAAACCACCAAGTTTGGTTGGTTGCTTTAATCAATAGGCTCAACTT
TAGCAAATctacttttacattttttccgCTAGAAAACCTTTCTGCCAATC
CAGTCATTTCTGTGCATCTTCTAATTAGACAATTAAACAAACATTCTAAT
cctttgaatttctaaaaataacttAAGAAAGGCCCCTGTATTCTTTAAAG
GTTAAGTATTTCTGAACCGTCTTTGAGAAGCAAGAGGCCAAGCGTTAAGT
TCAAAGCCCAAAAGGCTAAAATAAGCCAATAAGATTTGCGCCGCTTTTAG
AATTATTGATTGAATGTAgcactttttttgttttctcacggaaaatattc
aaattctGGCGGTGGATTACTTTCAATCTTGCATTTGTGTTAAAACCAGG
CCTTtaagatgggaaataagtggcttcatttccaaTCTTAGAGTTTCAAc
tttcggggctttaaactcaatggtgcGAAGGTTGTACACAGAGTAAATCT
CTGTCTTGATATAAATCATATCTTCTATCATCATCTTTTATTGTATAGTA
CATTTCAACACTGGACGAAACGATGGCAGACAATGGTGGAAGAGCAAACA
CTTGGAGAACATTGACTCTTGATGGTATGGgttcaacatttttttatttc
atctgTCATCGATTTATGTTTTCACACTTAATTCCCTATAGCacatatat
attatatttttggAAGCCTTTTATAAATTTCACCTCGTAAATTGAGCAAT
GTAAACTTTCcactaagaaatttaaaaaaggtttaaaaaggaagtcttta
aagaattttttattcGTTATTATTTTAGCAGGTAGGGAATTTAGAGAATG
TAAGAATAGGTCATTTGATGACTATGTTCGGAAACGATTCcatttcgctc
cgaaacgaaatgaagccattctattggttagattcaagttttacgtcact
tgtaaccaatagaatggcttcatttcgctTCGGAGCGAAACGTAAATGTT
ACATGCGAACATCATCGTAATCAGTTTTCACACGACTTAAAAGTTGTGTT
CTGGTTTTTCTATTTCAGTAATACCACGACATCACATCATATCCGACGTA
TTAGTGTATCTACAACACGGAACTAAATCAGAAAATCTGACTGAATTTTG
GAGGGAACACCTGAGAACAACTTCTCCTTGTGTACCGCTGACACAAACAC
AACAAGTGGAATATATAAAGCTGCTAGAAAACAGGTAAGAATTTTATTAT
AAATTGGAACAAATTTTCAGCGCttaatttttatctttagaAACTATTGG
TCACTGCAATCTTTAATACAAATTCTGCAAAAATCCCATGCAGAACTTGC
AGCGTTTGAAGGAGATTCAAACACAATATTCTTTGAACTACTTTATTTGG
AGATGTCACAGAAGTCACAGCTTGATTTCCTCTCAACAAAAGAAATGTTC
AAATCTTTAGAATTTCAACccaccaattttttttcgtttggtTCCATTCC
AGTTTACAAAATCTAGATCAGTGGATTTCGTAAAGAGAGAACAACATGGA
ATTTATTTCAAACAGATTGCCTTTAACAAGAAGACTCCttccaattattg
aaagatcaaaataaataattaaaaaaactaatgaagagGCTAACCTGGGC
TAACTACGTATAGTTTTCTGTATGTTGATATTTTATCACTACTTTAGAAG
AAATCAAGAGCCCGGAAGGCGAAGTAAGAAAGCGAGAGAAAGAGTTGCCA
AGATGAAGAAGATGTATCAACAAAATGATACTGAATTGGTAAATTTAggt
ttattttcttcaaaaatgaaaGCTACCGTAGTATGTTTAGTTGTTTTGGG
TTTGCTCAGGTAATATTATTACCAATTTTAGTCATCGTCCGAGTTGATTT
ACCATGACTTTGGAAATCGTTTATAATAATACATACTTCTTCTCTGAATC
CATTCCCATTTATCATGTGTAGCTAGACTCGTATATAGTTCCCGGCAAac
agttttgattttatgcTGGGACATTATTTTACTTGTTCTACATTTTATTA
CACCATTCCTTTCAGCAGTCTCCGCCCACATTGCCGCCATTTTCGCCGCC
CGCCAATCACCACGATGACCATTTTAACAATacaaacgatgacgtcatcg
ttccATCATCATTCATACGAAATGAGGAAATCGATTTTGAAAATGAGCTT
TGGGAAGAGGAAGGGAACATGCTGTTTGAATGGACGAAGAATTTATCACT
TACGAATCTTGCTTCTTGAGCAAGACTTTATGACTTTTCAAAATACTTAA
TGAAAGCTCCGAACAGTGCCCCGTAAGTTggatatttcttaaattttgaa
ttCAGAACAGCTAATACTATGCCTAAACTGAGAATTTCTAGTAATGTCTT
TTTGAGCAAAC

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_044224	XLOC_044224	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_6	supercontig	scaffold_6:123344..129654 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
15.1763	14.1706	15.6318	18.6016	9.32744	7.64603	5.29691	6.24545	3.4861	4.67602	6.23566	5.52591	2.60214	3.63679	2.13454	3.55713	3.38998	3.93119	1.22092	1.55939	2.88468	2.11412	6.14507	5.39472	16.8261	15.9724	2.83796	3.22476	2.15466	3.06164

Blast

[Close]

BLAST of TCONS_00071146 vs. Swiss-Prot (Human)
Match: CX058 (Putative uncharacterized protein CXorf58 OS=Homo sapiens GN=CXorf58 PE=2 SV=2)

HSP 1 Score: 189.889 bits (481), Expect = 3.920e-56
Identity = 102/264 (38.64%), Postives = 155/264 (58.71%), Query Frame = 3

Query:   54 IENCWCCYRDRQMFRLLKQAISTADHSFTAEVMRKISPNEAELLKDPVFKTKIRFRFSGEEFPPRIVFKVFIKTDGFGVKYLCGKKVIKPASQAASDSCSMMGNRKFLDQILKDLCLEEQKGVQNETELSSMKDYMKYISTLDETMADNGGRANTWRTLTLDVIPRHHIISDVLVYLQHGTKSENL-------------TEFWREHLRTTSPCVPLTQTQQVEYIKLLENRRNQEPGRRSKKARERVAKMKKMY---QQNDTEL 797
            I+  W  + ++ +FRLLK AI  A+   T E+++K++P EA+L+KDP  + KIRFRF GE FPP IVFK+F+ TDG G KY  GK V+ P+S+A  D+C +MG RKF   I++D  +  +  V +  ++ +M+DY++Y S  DE  A +GGR N+WR L L+ IPR  ++ D++ Y + G  S  L              E  +  LR  S       T Q  Y    +  + +  GRRSK+A+ +V KM+K+Y   ++N +E+
Sbjct:   49 IQRAWLSHTNKMIFRLLKHAICAAEFYVTHEILKKVAPLEAKLIKDPTMQCKIRFRFRGETFPPFIVFKIFLHTDGHGYKYFSGKNVLMPSSKAVDDACKLMGERKFHRIIMEDERIFPKSKVTDIMDVVTMQDYVQYRSFFDEAPAFSGGRNNSWRKLNLENIPRTMLMYDIVHYSESGVISNRLRNEMKFLLQRPVTQEIHKHQLRIVSEIRGPYLTVQPLYRPYKQQNQVKFLGRRSKQAQMKVEKMRKVYLAKEKNTSEV 312

The following BLAST results are available for this feature:

BLAST of TCONS_00071146 vs. Swiss-Prot (Human)

BLAST of TCONS_00071146 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
CX058	3.920e-56	38.64	Putative uncharacterized protein CXorf58 OS=Homo s...	[more]

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TCONS_00071146 (transcript) - C. hemisphaerica