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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00071148 ID=TCONS_00071148|Name=TCONS_00071148|organism=Clytia hemisphaerica|type=transcript|length=1367bp
cgaaaattaagATTTAGGTATAAAACCTGtagattaaaataaaatttctc
atttgGATTTTATGAATTTGTGGGGAAGCTGGGAGAAAACAACTCTATAC
GAAAATGTGGCTGCTCACAGCTTTCGCTACCATTTTGGTTTCTTTGGTCA
CCATGACAACCGCTCAATCGTGTGGAGTCTTGAAAGATGTGAACGGGTGT
AGTGTGCCATTCGGTTTAGAAATACCGTTTAAAAATACGTTCGAACCAGC
ATGCTTAAATCACGATGTTTGCTATCGATGTGGTGTAACATACAGTTGGT
CTCAAAAAGTATGTGACGATGGTTTCAAGCGAATCATGCACGAAAAATGT
GATGAAAACTTTGTTAACGGTGGTAGCCGTAAAAAGCGATTTCTAAGCtc
tctgaaaagaaaatatcaacgATTGAGagaaaagtatcaaaaattgaaga
tttttaagGAGAAGATCAAAGCTGGTTGGAGAGAAGCAAAGAAAAATGCA
AGTTCTCGAGATGAAGTTGAACGAATCACAAAAGGACTTTGGGACATTAT
CAAGATaacaacaaaattttattttgatattgatgattctgatgagTTAG
ATAAATGTAAATTGGCAACCGATATCTTTTACCGATCCGTAGACGTGTTT
GGAGTTTATCGTTACCGGTACACGAACGAAGCGTACTGCCAGGAAAAATG
CGCTCGGCAACTAGGCTATCCTTACGCTAACAATGTATATGTTACGATCT
AGAGTTTGagacattgagtttcaagcctgaagggctagatgcgagactcc
tggatagaaaatgaaaccacttatttcccatccagaacgcccgctcGCTC
gcagtttttacacaaacgccggattgaaactaaaatctatcgctagattt
caaaaatgtagtcctccaaaacaaaggaaccgctagatacaatccgtcat
CATGATTACAGCGTTCTATGcgtgttttggatgggaaataggtGGCTTCA
ATTtccttgcctgagaagggttaaagttttgcccttcgggcttgaaactc
aatggtttgaGCTAACCGTGGCATTTTTAATTAGGCTTGTAAATGTGAAA
TATGATATGACAATAATACTCATTATGAAATTGAAACTTCACGCTTACAT
TATTCTAAAACTAAATGTGCCCATAAAAGGTAATACGAGCCCGATCCTAC
AGTATTGTACTTAGCTGTGCTAGTTTATTTGACTAGCTGTATGCTTAAGA
TTTCATTCATTTCTTCAAATAAcctctttattaaaaaaataccaACGGAA
GTAAAATGTAGAGTATAGAGATGTGTGGACGCTTTCTTCTTTTGAAgatt
gcgaaattaaatttctg Run BLAST on NCBI transcript from alignment at scaffold_6:225738..228135+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00071148 ID=TCONS_00071148|Name=TCONS_00071148|organism=Clytia hemisphaerica|type=transcript|length=2398bp|location=Sequence derived from alignment at scaffold_6:225738..228135+ (Clytia hemisphaerica)
cgaaaattaagATTTAGGTATAAAACCTGtagattaaaataaaatttctc
atttgGATTTTATGAATTTGTGGGGAAGCTGGGAGAAAACAACTCTATAC
GAAAATGTGGCTGCTCACAGCTTTCGCTACCATTTTGGTTTCTTTGGTCA
CCATGACAACCGCTCAATCGTGTGGAGTCTTGAAAGATGTGAACGGGTGT
AGTGTGCCATTCGGTTTAGAAATACCGTTTAAAAATACGTTCGAACCAGC
ATGCTTAAATCACGATGTTTGCTATCGATGTGTAAGTAGGGTTTTAACAC
TTATATAGCCTAATCTTTATCGATGTGTAAGTAGGGCTTTAACACTTNCT
TTTGATCTAACGTTTTTAAAAGGTAATCAGGAGCGGGAGGTTACAGATCT
CGTATACAAAGAATCTTATcggtcctttttacgccggcccttattagcGT
TATCTTTTCGATACTGGCGTAATTAGGGCCGGTGTAACGGCTAAAAAATA
GAACGAGATGgaatttttacaagctcttatttgatttggttggtcgttaa
ctagtaataaaacaattttgttactttttctaaagaacgcgtcattttta
ttaccttatcggggaaaacttggtcggggaaaagtgacgaaattttggcc
aagtgacgaatatttttccccaaCAAAAATTTTCCCGGCCTTAATgtgtt
taccaactaccagcaagtgaggaatatttttccccgacaaaaattttccc
cgacacGAAGTTTTCCCCAATTAGTTACTTCAAATGACTTTTATTATTaa
aatatcttataaaaactccatcacTTGCCACTAAATACTCCTGAGGTTAT
TATAGAGTAGCAATACGACATAAAACCCCGTATCTTGATGAAAAAGTGCC
TGTTTTACAAACTTTTAaaggaatttttgttttgtatatTTTAACTTCGA
AGAGAAAAGACAGTGAAAAGAAACAATACAAACAACCCTTGATGTCTTCC
CATCCCTCTCAAATcaccatacacgtttttttttataagaacgtcaaaaa
ttttcgaagccttcggatgttcttagttttttggatttgaagcctaaaaa
tgttcttaaaatgttcttattttcagcattttttgagcattttgatgtaa
tttcttaagaaattgcatgtttttaagtctccaaggccttagaatgttct
tagaatatgttcttaaatttttgggcctcgaagccttatgttcttatata
gtttgttcttataaaaaaaaaacgtgtacaactGATTCTATTTATTCAAC
GTTTCTTCACAGGGTGTAACATACAGTTGGTCTCAAAAAGTATGTGACGA
TGGTTTCAAGCGAATCATGCACGAAAAATGTGATGAAAACTTTGTTAACG
GTGGTAGCCGTAAAAAGCGATTTCTAAGCtctctgaaaagaaaatatcaa
cgATTGAGagaaaagtatcaaaaattgaagatttttaagGAGAAGATCAA
AGCTGGTTGGAGAGAAGCAAAGAAAAATGCAAGTTCTCGAGATGAAGTTG
AACGAATCACAAAAGGACTTTGGGACATTATCAAGATaacaacaaaattt
tattttgatattgatgattctgatgagTTAGATAAATGTAAATTGGCAAC
CGATATCTTTTACCGATCCGTAGACGTGTTTGGAGTTTATCGTTACCGGT
ACACGAACGAAGCGTACTGCCAGGAAAAATGCGCTCGGCAACTAGGCTAT
CCTTACGCTAACAATGTATATGTTACGATCTAGAGTTTGagacattgagt
ttcaagcctgaagggctagatgcgagactcctggatagaaaatgaaacca
cttatttcccatccagaacgcccgctcGCTCgcagtttttacacaaacgc
cggattgaaactaaaatctatcgctagatttcaaaaatgtagtcctccaa
aacaaaggaaccgctagatacaatccgtcatCATGATTACAGCGTTCTAT
GcgtgttttggatgggaaataggtGGCTTCAATTtccttgcctgagaagg
gttaaagttttgcccttcgggcttgaaactcaatggtttgaGCTAACCGT
GGCATTTTTAATTAGGCTTGTAAATGTGAAATATGATATGACAATAATAC
TCATTATGAAATTGAAACTTCACGCTTACATTATTCTAAAACTAAATGTG
CCCATAAAAGGTAATACGAGCCCGATCCTACAGTATTGTACTTAGCTGTG
CTAGTTTATTTGACTAGCTGTATGCTTAAGATTTCATTCATTTCTTCAAA
TAAcctctttattaaaaaaataccaACGGAAGTAAAATGTAGAGTATAGA
GATGTGTGGACGCTTTCTTCTTTTGAAgattgcgaaattaaatttctg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00071148-exon-scaffold_6-1491911889:225738..226018 | TCONS_00071148-exon-scaffold_6-1491911889:225738..226018 | Clytia hemisphaerica | exon |
| TCONS_00071148-exon-scaffold_6-1510915933:225738..226018 | TCONS_00071148-exon-scaffold_6-1510915933:225738..226018 | Clytia hemisphaerica | exon |
| TCONS_00071148-exon-scaffold_6-1575043694:225738..226018 | TCONS_00071148-exon-scaffold_6-1575043694:225738..226018 | Clytia hemisphaerica | exon |
| TCONS_00071148-exon-scaffold_6-1491911889:227050..228135 | TCONS_00071148-exon-scaffold_6-1491911889:227050..228135 | Clytia hemisphaerica | exon |
| TCONS_00071148-exon-scaffold_6-1510915933:227050..228135 | TCONS_00071148-exon-scaffold_6-1510915933:227050..228135 | Clytia hemisphaerica | exon |
| TCONS_00071148-exon-scaffold_6-1575043694:227050..228135 | TCONS_00071148-exon-scaffold_6-1575043694:227050..228135 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_6 | supercontig | scaffold_6:225738..228135 + |
Blast
The following BLAST results are available for this feature:
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