TCONS_00071161 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00071161
Unique Name	TCONS_00071161
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	612

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at scaffold_6:162993..167682-

transcript sequence

>TCONS_00071161 ID=TCONS_00071161|Name=TCONS_00071161|organism=Clytia hemisphaerica|type=transcript|length=612bp
tagataCTGAAGAATCCTTCACCAccttgccagtagtggcaaaacAAAAA
ACTGGTAAGGATGTaacaacaacaaagaaaagttttgaagAGTTTATTTC
AACTATTGGTCTTTCAAAAGTCACacaagaaaatgttcaagagaAAGCAG
TTAAACGAAGCATGGAAACGCAAGCTGGTAGTGCAAAGGTGGTCAAGAAA
AAACGGTCTAGgctaaaaaataacaacaagGAACCCAATATACTGGAAGA
AGGTGTATCAAATCGTTCAATGAGAACTCGATCGCGGTCAAACAAAACAA
TTGATATTTCGCTGGCAGCTTATTGTAGCATGATCAATAAATCCATCAAT
CAGACAACGGATGTTGACCAGGATGATGCTGGTGTTGAAAAACATCCATC
TCCCATATCAAAAGCTTCTGCAAAGACCAACAATGTCACTACCTTTAACA
ATCAAAGTATTGTCAAGAGAAACAATAGGAAGAATATCAGCAAGAATTTA
CAAATCATCTTTAATGAAGAAAGTATCTGCAAACAAGATTTTGTTCCTTC
TGAACCATTaaccaaaaaagCAAAAAGAGCCAAGCGTAAGCGGGTGTGCA
TGCCGACAAGTA

Run BLAST on NCBI

transcript from alignment at scaffold_6:162993..167682-

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00071161 ID=TCONS_00071161|Name=TCONS_00071161|organism=Clytia hemisphaerica|type=transcript|length=4690bp|location=Sequence derived from alignment at scaffold_6:162993..167682- (Clytia hemisphaerica)
TAGATACTGAAGAATCCTTCACCACCTTGCCAGTAGTGGCAAAACAAAAA
ACTGGTAAGGATGTAACAACAACAAAGAAAAGTTTTGAAGGTAAGTAAGT
TTAACAAGACAAGTGCTTTATCAGTAAAGGCGACCATGAAAAATTACTCT
CATCAAAAGTCCAACACCACTTTCTTTTGCTGTTTTTGAACTTCTGACTA
TGAGTTTGTTAGTAACGATTAAAAAATTACAGTCAGAATTTAAATCTGTT
AAATTTACTCATTCAGAGATTTCGATGCAAGTTGAGAATGAAAGCCCTTC
CAAAGAAAAGAATGTTTCATCAAATGAACCAAAAAGTGCGACTCCAAAAA
AGAATCTAACAGGTTAATTATAATTCCTTCAAACCTAGAAAGATTAATAG
TGAGCCTTGTTCTTCCATTTCAGATTGAGTCATATGTTTTGTGAAAGTTA
GAAATAACAAATTCTGTCTGAAATGGCAATGGCCTAAACTAAAGTTTGAA
AGCGTCTATTAAACAAAAATGAGATTTTCAACTCCGACACTATTATTATT
ATTATTATCTACTCTCATAGTTGACCTTTTTCATAAATTACGTCACAAGC
AACGCTTACCTCCTTTTTAAAGTATTGCCATGGTAATTGATTCCCAGAGG
AGTTTAAAAGCAGTTTACTCTATTTCAGTAACACTTGAAGACTATAATCA
TCTTTTTAATGGCTTCAAAACGAGTCAGCTGTTGAACCAAGAACTCATGA
AAAAGCCTAATAATCCGTTTACCTGTTTTTCACTCACCCTTTCTAATTGA
AAACTAACTTCATAACTCCATTTATAATAAAAGCAACACCACTTTATTTC
AATTTTTCGTAGAGTTTATTTCAACTATTGGTCTTTCAAAAGTCACACAA
GAAAATGTTCAAGAGAAAGCAGTTAAACGAAGCATGGAAACGCAAGCTGG
TAGTGCAAAGGTGGTCAAGAAAAAACGGTCTAGGCTAAAAAATAACAACA
AGGAACCCAATATACTGGAAGAAGGTGTATCAAATCGTTCAATGAGAACT
CGATCGCGGTCAAACAAAACAATTGATATTTCGCTGGCAGCTTATTGTAG
CATGATCAATAAATCCATCAATCAGACAACGGATGTTGACCAGGATGATG
CTGGTGTTGAAAAACATCCATCTCCCATATCAAAAGGTTTGTATATCAAG
ATTTTGATATAATGATGATGACTGGCTTCTCCTTACAGAGGATGCTAGAT
TCTATATTGAGCAGCCTAGGAGTCGTCTCGTTATTACTGTCTTACACTAT
AGTTTATACTGCCTGCTCTGGCTCACTTTGATATCATGGTATGTCCTCTA
GAAGCAGAATCTGCGCACTTTTTGGTATTTACATGTCGACGAAACATAGA
TGGATTTAACAGGCTAGGTATATAAAAGGCTATATATAATATTAGCAGTC
ATTGAAAGAGTGGCTGACACGGTGTATAAATTAATTTCAAAATCAAACAA
AATTGCCACTGAAATTTTGAAATTAACCTGTCAAATTAAGACTTCATTGA
CACAAAAATTCATACACACCGCCAAGCATTTTCAGAACACTTTAACTGAT
GTCAATATCTAATTGATTTTGTAGCTTCTGCAAAAACCAATAACACAAAG
AAAAACAATCAAAGCATTGTCAAGAGAAACAATAGGAAGAATATCAGCAA
GAATTTACAAGTCACCTTTAATGAAGAAAGTATCTGCAAACAAGTTTTTG
TTCCTTCTGAACCATTAACCAAAAAAGGTTTGTTTAAGTCGTGGCTAAAT
TATTCAGTTCTGTCTAATAGCGATTCTTAGCCTTACCAAGTAAATTTCCT
ATTTAGAAAAATCATGTTGCAGCTTTTGTTTATGTCTTAGCTTAAGTTTT
TTTACTCAAGGTTTTACATTGATTGATTGAAAATAATTAATGAAAGTTTT
CTTTGGTATTTTTAAAAGAGTTAAAAGTTGGGGACTGATGACGAGTGGAC
ATTTTTAGTTGAATTCGATAATCATCTATTGGATTTATATATATAAATTT
TACCAAATACTATTCCTAGTAATATAGGNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NAAACCAAAATTTGGGAAAACAGTTACTCCACCAGTGGACTAACTGCAAC
ATGGGTGGTGCCTTAACATGAAATTTGGAAAATCAGTTATTATTTTGTGG
AGTAACTGTTAAAATTTTAGCTTATTTCTGCAAAGATTGTGAAAATTTTT
CTTATAAAAAATAGAAATTTTTTTTTCTGTCCTAAAAACCTTAAAGATAC
TCATAGTTCCAGCTGATAGTTCTCCTTAATAATAAGTGTATCCAGCAGCA
GGTGTATCTGAGTTTATTTTTCATAGTTTGTGTTCTCTATCTATTCCAAA
ACATTGTATTTACACAGGTTTGTTCAGGTTTTTACCAATACTTCCATCAG
GTGTTGTTTTCCTTTTCAATCAAAAACGGACAGATTTTTTTCAATCAATG
TGAAGAGTTTTTAATTGAACTAACCATTGATTTGTACAGTTTTAATAAAG
ACATCTCAACTATATTTATATTTAGAATTTTTGTTAGAAATTTAATTCAA
TGTTTTGAAAAGTACTGTATTGAAGTTCTCAAAGTTATATCGCTTGAGTA
GGTTTGAATGTTTTGGGAGTTGGGAAAATGTTAAAAGTAATTATTTATGA
ATTTGATTAATGGAGATTATATGTACCTTTGTTTTTTTTAGAAATAATTA
GAAAGAAACAGATATAAAATGGATAGAGTAGAAAATGCAACAGATAAAGA
TTTAGCAGTATCTGACAGTGACAAGGAGAATGAAGAGGAAGAAGAAATTG
TTAATAAATGCAGCTTTTGTGAAAAAACTTTTCATGGAGCTGGTCATAAC
AGAACTAATTTTGAGCGTCATGTTGAGTCTNAAATTCATACGCACCAAGT
TTTAGGATTTTCAGCACGCTTTAATTGATGTGAATATCTACTTAATATTG
TAGCTTCTGCAAAGACCAACAATGTCACTACCTTTAACAATCAAAGTATT
GTCAAGAGAAACAATAGGAAGAATATCAGCAAGAATTTACAAATCATCTT
TAATGAAGAAAGTATCTGCAAACAAGATTTTGTTCCTTCTGAACCATTAA
CCAAAAAAGGTTTGTTTAAGTCGTTTTCAAAATTATTTAGTTCTATCTAA
TAACCATTCTTAAGCCTTATCAAGTAAATTTTCTATTTAGAAAAAACAGG
TATTTCAATTGTTTTTTGGACCTACCCCGGAGGTCCTTTTAATTTTTCGT
TCGTTCGTTCGTCCGTTCGTCCGTTCGTCTGTTCTCTGTTACCAGCTTTT
CTCGGGATTGGCTCATTAGTTATTTCAGATTTTTTGCACAGTGATGCAAA
ATGGTTATTCCCAAAAAGCGACGGAGCCCGATTTTCGAAAAGATTTAGGC
CAAAAAGTGCCTAAAAATGGGGTTTTTTGGACTTGGACTAATGTTGCTTG
TTTGATCAAAAATTTCTAGCAGCTTCTGTTCTGTCTTTACAATTTTTTTT
TCGAGGTTTATTGACTGAAATTAATTAATGAAAGCTTTCTTTGGAATCTT
TAAACGAGATAAATGAAATAAATGAAAAATTGTTCTTTTCTTTTCCAGCA
AAAAGAGCCAAGCGTAAGCGGGTGTGCATGCCGACAAGTA

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_044231	XLOC_044231	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00071161-exon-scaffold_6-1575043694:167593..167682	TCONS_00071161-exon-scaffold_6-1575043694:167593..167682	Clytia hemisphaerica	exon
TCONS_00071161-exon-scaffold_6-1575043694:166497..166820	TCONS_00071161-exon-scaffold_6-1575043694:166497..166820	Clytia hemisphaerica	exon
TCONS_00071161-exon-scaffold_6-1575043694:163524..163679	TCONS_00071161-exon-scaffold_6-1575043694:163524..163679	Clytia hemisphaerica	exon
TCONS_00071161-exon-scaffold_6-1575043694:162993..163034	TCONS_00071161-exon-scaffold_6-1575043694:162993..163034	Clytia hemisphaerica	exon
TCONS_00071161-exon-scaffold_6-1510915933:167593..167682	TCONS_00071161-exon-scaffold_6-1510915933:167593..167682	Clytia hemisphaerica	exon
TCONS_00071161-exon-scaffold_6-1510915933:166497..166820	TCONS_00071161-exon-scaffold_6-1510915933:166497..166820	Clytia hemisphaerica	exon
TCONS_00071161-exon-scaffold_6-1510915933:163524..163679	TCONS_00071161-exon-scaffold_6-1510915933:163524..163679	Clytia hemisphaerica	exon
TCONS_00071161-exon-scaffold_6-1510915933:162993..163034	TCONS_00071161-exon-scaffold_6-1510915933:162993..163034	Clytia hemisphaerica	exon
TCONS_00071161-exon-scaffold_6-1491911889:167593..167682	TCONS_00071161-exon-scaffold_6-1491911889:167593..167682	Clytia hemisphaerica	exon
TCONS_00071161-exon-scaffold_6-1491911889:166497..166820	TCONS_00071161-exon-scaffold_6-1491911889:166497..166820	Clytia hemisphaerica	exon
TCONS_00071161-exon-scaffold_6-1491911889:163524..163679	TCONS_00071161-exon-scaffold_6-1491911889:163524..163679	Clytia hemisphaerica	exon
TCONS_00071161-exon-scaffold_6-1491911889:162993..163034	TCONS_00071161-exon-scaffold_6-1491911889:162993..163034	Clytia hemisphaerica	exon

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_6	supercontig	scaffold_6:162993..167682 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.41951	4.49383	42.0251	39.4172	6.90962e-09	0	0	0	12.1923	18.0371	6.68973	7.82573	2.97276	9.32207	11.3227	14.7623	25.8651	16.868	1.95322	6.77418	3.97028	10.431	6.42343	4.02249	0	0	4.30872	3.57171	5.44747	4.75203

Blast

The following BLAST results are available for this feature:

BLAST of TCONS_00071161 vs. Swiss-Prot (Human)

BLAST of TCONS_00071161 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0


Match Name	E-value	Identity	Description

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TCONS_00071161 (transcript) - C. hemisphaerica