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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00071181 ID=TCONS_00071181|Name=TCONS_00071181|organism=Clytia hemisphaerica|type=transcript|length=1502bp
ggaAAGAAAACTGAAGAAAAGACTGTGACAGCACACTCACACTCTAAatt
ttgacaaacttttttctgaaaaacaaACTCAAGACTTGCAATTTCCATGA
ACGTCCTCTGGATAAACTGATAAAGTTATTAAATTTATTATAAAGGTTTT
AAAAGAGAAGAGCAGAAGAAGGagttatatttttaaagaactcttttATG
TCTTTTACAAGATCAAAAAGTTCAATAGCCATGTCCATGAAACGATCTGT
CATTTATTTGTTCCAAAACGATTTACGACTTCATGACAATGAATGCTTAA
AGATTGCTCAAAGTAAAGGGAATTTCTTGATTCCCTTATATTGTTTCCAG
CCCAACCATTTCAAGGGAACGTATAGCTTTAACTTGCCAAGAAGTGGTAC
ACACAGAACAAAATTTCTCATTGAAAGCATCACTGATCTACGTGCTAATC
TACAAAAACTTGGTTCAAACTTAGTTGTTCGAAATGAATCTCCACTGTCA
ACCATCAAAGACTTGGTAAAACTTTGTCAAAATTCTGAAGCACCTGTCTC
CTCCATCATTTATCAAAAAGAAGTGACTTCAGAAGAGATTGATTTGNTAC
TTCATACAGGCTGGATGTCAAATCGGGGTCGTCAAAACGTGGCTAGTTTC
TTGGTCAAGGACTTGAAATTAGACTGGCGTCTTGGAGCCGAATGGTTCGA
ATCGCAACTTCTTGATCATGATGTTTGCAGTAATTATGGTAATTGGAATT
ATTCAGCTGGCNGACTACCCTGTTTGGGGTTTGTCATTGTTTCACAAAGA
TGACATTCCATACAATAAGAAGACCATCCCAGATACATATTCCAAGTTTC
GTCAAGGAGTAGAATCTAAAAGCGAAATTCGTGATTTAATTCCTACACCA
CTAACCCTTAATAAACTGCCACCTATCAAAGGTGCCAGTCTTGGTGATAT
CCCTACAATGGAGAAGTTGATCGGTGTTCAAAGCTATATGCAAGATAACA
GAACAGCTGTTCCACTAGAAGGTGGTGAAAGTGCTGGCTTGAAACATCTC
CAAAAATATCTTTGGGACACTGATGCCATTTCAACTTACAAAGAAACCAG
GAATGGTCTATTAGGAGAAGAATACTCGACCAAGTTTAGTATCTGGCTTG
CTAATGGTTCTTTATCTCCAAGACAGATCTACCATGAAGTCAAGAGATAT
GAAAATCAACGTGTATCCAACCAATCCACTTACTGGAGTATCTTTGAACT
GATCTGGAGAGATTACTTTAAATTTGTATGTTGGAAATATGGGAGAAAAG
TGTTCTATTTATCTGGCATCATGGGCAAACATTTACCTTGGAAACAAGAC
AAAATTGCTTTTCAGAAATGGTGCCAAGGTGAGACAGGTGTTCCTTTTGT
TGACGCAAATATGAGAGAGTTACTTCATACAGGCTGGATGTCAAATCGGG
GTCGTCAAAACGTGGCTAGTTTCTTGGTCAAGGACTTGAAATTAGACTGG
CG Run BLAST on NCBI transcript from alignment at scaffold_6:245516..250936- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00071181 ID=TCONS_00071181|Name=TCONS_00071181|organism=Clytia hemisphaerica|type=transcript|length=5421bp|location=Sequence derived from alignment at scaffold_6:245516..250936- (Clytia hemisphaerica)
GGAAAGAAAACTGAAGAAAAGACTGTGACAGCACACTCACACTCTAAATT
TTGACAAACTTTTTTCTGAAAAACAAACTCAAGACTTGCAATTTCCATGA
ACGTCCTCTGGATAAACTGATAAAGTTATTAAATTTATTATAAAGGTTTT
AAAAGAGAAGAGCAGAAGAAGGAGTTATATTTTTAAAGAACTCTTTTATG
TCTTTTACAAGATCAAAAAGTTCAAGTAAGTAGGGAGATGTTTTGTTTTT
TATTTTATTTAGCTAAGTATGGGAATTTTCAAAATGCTTGCAACGTTACA
AATCATTTTCAGAAGCTCATTTTGGTTTGGGCTCAAACGAAGCGTATACC
GTTGTGAGAGTGGGTAACTTGCATCAGTGGAGGCTAACATGCATAGCCGC
CCTCAGATGAAAGATCTGGCTGGTCATTAAAATACAACTACGCAGCTCCG
CTCGCAGCTCTACTCTACCATTTTTGTTTTGATTTAACTTTGTACAGTCA
GGCACATCCTGGCAAATGAACAGGGTATTTTTCATTTGCGATTGGTGGCA
AATGCAAGGGGTCGAAAACAAAAGTGATGTAATAGCACTGAATACCCCAC
GCAATTGAACTGGGTTGGAAATATTTTGCTTCATTNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNTCTTTCATTTGAGGGCTATGCATGTTAGCCATTAGCCTGC
CTCCACTGATGCAAGTTACCCAATCTCACGGTATATAACTAAGAGTAAGA
TTCAGTCTAGGCCAGATGTCTTTTTTATATTTTGATATTTTGCGTAATTC
ATAAAAATCCTCAATTTTGTGCTACGTGGGATGATTGGTCTGTTAAATCT
CTTTGACAACAAATTTATCAATCAGTAGCTTCCACAGAGTGCAGATGTCT
TGAATTTGGGACTTTGGATGTCAATATACCAGAATATACCGTGAAGTCGG
GTAACTTGCATCAGTGGAGGGAAACTTGCATAGCCATCAAATGACTGACC
AATCAAAAGCAGCAAAATTTCAAAACAAATGAACTGCGCAGCTTCACTCG
CAGCTCTACTCTACCATGCCATTTTTGTTTCGATTTAATTTTGTATTTTA
ATGACCAGCCCGGGTCATTCATTTGAGGGGTATGCATGTTATGTTAGCCT
CCACTGATGCAAGTTACCCGATCTCACGGTATATCTTGGGATAGAATTAC
CGTTGACAACTTTGACTTGAATTTTCCAAATGATTTTCATGATAGCTATG
CCCTGACAAAGTTTCATTTTTTGTGCCGAAATCCCTTTAAATCACAATTT
TTTCTGGTCCTTATTAAAGACAATGTCTGGGTAAAGGGAGTGACAGATAA
GGCTGCGGCGTCCCATGCAGAGTCAGATAAATAAAAGCCATTTATTTGTG
CAATGATATCCTCCAAACAAAATGTTTGAAAATGATTGAAAGTTGTTTTG
AGCTGCTTCACATTCTATTGCTTTAAAACAATAAAATTAATTGTAAAGTT
GATTTTGAATAAATTTGAATTGAATTCATAGGTTGCAGAGGGCTATGAAC
CCCTAGGTTTATTTCACCCCATATATACACCCCCTGCGCTCTATGCACCA
CTAAAAGTGATTACAGAGTACAAGATTTATAGTCACAAGTCAAAAATTAA
CAATATAACAATATAACTAGTGTTGTTTGGTGGTAAATATTTTTACCATT
TTGTATGATTGAAATGATCATAATTTCCAAATCCCCTTATCTTATTTGAC
CCCTCTAACATTCCCATACCTGCTACGAAAGACTGCTGTACGCAATGTTT
TTTTATATACAAAGACAAAGCAAATATACATATGCTGCTCTGCCACCCAA
ATTTCCTGAGTAAATATAGTTTGACAGAAATTCTTGATTTCTTCACATAT
ATTGGTCTAATGTTGACATCCCTTATCAAATTCTGACACATTTCTTTATA
GTTATGGGAATAAAAGGAAGGTCAGAATTGCTGAGATTTTTTATCCAAAA
TGCTTTGGGGGTAGTCTGGAGACAAAAAGAAAGATATGTTTGTAAATTTA
ACGAGTAATTAGCTTGTATAACTTGATCATGAGTTAGTATCAATGCGTGA
CAGAGTAAATAATCTCGAACCAACTTATACTTATGACTCTTCATTCATCA
AGTAAGAGTGTCAAATGATATTGGAAAATACAAAAAAATTCACACAGTCA
TAGCCATCTCATTTTGACCACAAGGACTTATGGATCACAAAAATTGACAG
TTTCAAAATTTTTTTGAAACAATTTTTTCTAACACAAACCACAATCTTTT
TTAACTGAGATGACAAGAGAATTACAAATTACACCCCTGTCTCACAGCCC
CGGTGGAACTTCTTCTCACAGTACAGTAGTGGGAATAAAAATTTATATCG
AAATCCCAGGGGTAAAGAAATTCTAATTGTTCCCAGGTCAAAAAAATCCA
GTAGGGATGGTTTTGGAGTACAATTTTTTTCAATTGAGTTTCAATTGGGG
ATGAAAATTAAATCAATTTTCCAGTAGGGCTGAAATTGTAGTAGGGTATT
TTCCCCAACCGGGACANGAAAATTAAATCAATTTTCCAGTAGGGCTGAAA
TTGTAGTAGGGTATTTTTCCCAACCGGGACGAAATTTTAGCCAAATTTTT
CAGAGGAAAGGAAGTCCTACTTGGTTTGTGAACAGAGGGTGTCTTATTGG
CATGTCATACTTTTGAGTTGTGTTTCACACTGTATTTTTTATTTGTAGTA
GCCATGTCCATGAAACGATCTGTCATTTATTTGTTCCAAAACGATTTACG
ACTTCATGACAATGAATGCTTAAAGATTGCTCAAAGTAAAGGGAATTTCT
TGATTCCCTTATATTGTTTCCAGCCCAACCATTTCAAGGTAAACTTTTCT
TAATACTTTGTACTATGCAAAGATCTAGCTGTTACATTCTTTTATTTAAA
AATGAAAAAAAAAATCTGCACTGTTTAAAGGAAAATNAGTCAAGTCTAAA
AAAGTAAGAATATGTTAAGAATATTTTGGCACTTTCTTAAAAATACTTGA
CCCTCATCCAAAGTACACTATTCTTATAAAAAAAAAGAAAATTGTAAAAA
TTTTTAAAACCCAGAAATTATCCCAAACTCACTTTTCTCTAACTCTCTTT
TTTATAGGGAACGTATAGCTTTAACTTGCCAAGAAGTGGTACACACAGAA
CAAAATTTCTCATTGAAAGCATCACTGATCTACGTGCTAATCTACAAAAA
CTTGGTTCAAACTTAGTTGTTCGAAATGAATCTCCACTGTCAACCATCAA
AGACTTGGTAAAACTTTGTCAAAATTCTGAAGCACCTGTCTCCTCCATCA
TTTATCAAAAAGAAGTGACTTCAGAAGAGATTGATTTGNTACTTCATACA
GGCTGGATGTCAAATCGGGGTCGTCAAAACGTGGCTAGTTTCTTGGTCAA
GGACTTGAAATTAGACTGGCGTCTTGGAGCCGAATGGTTCGAATCGCAAC
TTCTTGATCATGATGTTTGCAGTAATTATGGTAATTGGAATTATTCAGCT
GGCNGACTACCCTGTTTGGGGTTTGTCATTGTTTCACAAGTAAGTTTCAG
TCTCCTCTCTGTGAATTCGGTATGATGTCAAATTTAATAGAGTTTCCTCA
TTTTTCTTAGTATTTTTTCTCTGACATATTTTTTTCTGTTGATAAAATTA
CTTAGTTTTATCAAATATTCGTTTCGGTTTCGAGCATAAATTAAGGAAGA
TAGGCTCCTACTCCTAAGGCCTAAAAGCCTGGAGCTGTCTATTGTGTAGA
CTAGTTTGAATCATGCTCTCTCTATGTTAGCATAGTTATTTGATTTTATT
GTTCTTATACTTTTAGAGATGACATTCCATACAATAAGAAGACCATCCCA
GATACATATTCCAAGTTTCGTCAAGGAGTAGAATCTAAAAGCGAAATTCG
TGATTTAATTCCTACACCACTAACCCTTAATAAACTGCCACCTATCAAAG
GTGCCAGTCTTGGTGATATCCCTACAATGGAGAAGTTGATCGGTGTTCAA
AGCTATATGCAAGATAACAGAACAGCTGTTCCACTAGAAGGTGGTGAAAG
TGCTGGCTTGAAACATCTCCAAAAATATCTTTGGGACACTGATGCCATTT
CAACTTACAAAGAAACCAGGAATGGTCTATTAGGAGAAGAATACTCGACC
AAGTTTAGTATCTGGCTTGCTAATGGTTCTTTATCTCCAAGACAGATCTA
CCATGAAGTCAAGAGATATGAAAATCAACGTGTATCCAACCAATCCACTT
ACTGGAGTATCTTTGAACTGATCTGGAGAGATTACTTTAAATTTGTATGT
TGGAAATATGGGAGAAAAGTGTTCTATTTATCTGGCATCATGGGCAAACA
TTTACCTTGGAAACAAGACAAAATTGCTTTTCAGAAATGGTGCCAAGGTG
AGACAGGTGTTCCTTTTGTTGACGCAAATATGAGAGAGTTACTTCATACA
GGCTGGATGTCAAATCGGGGTCGTCAAAACGTGGCTAGTTTCTTGGTCAA
GGACTTGAAATTAGACTGGCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00071181-exon-scaffold_6-1575043694:250712..250936 | TCONS_00071181-exon-scaffold_6-1575043694:250712..250936 | Clytia hemisphaerica | exon |
| TCONS_00071181-exon-scaffold_6-1575043694:247199..247338 | TCONS_00071181-exon-scaffold_6-1575043694:247199..247338 | Clytia hemisphaerica | exon |
| TCONS_00071181-exon-scaffold_6-1575043694:246498..246929 | TCONS_00071181-exon-scaffold_6-1575043694:246498..246929 | Clytia hemisphaerica | exon |
| TCONS_00071181-exon-scaffold_6-1575043694:245516..246220 | TCONS_00071181-exon-scaffold_6-1575043694:245516..246220 | Clytia hemisphaerica | exon |
| TCONS_00071181-exon-scaffold_6-1510915933:250712..250936 | TCONS_00071181-exon-scaffold_6-1510915933:250712..250936 | Clytia hemisphaerica | exon |
| TCONS_00071181-exon-scaffold_6-1510915933:247199..247338 | TCONS_00071181-exon-scaffold_6-1510915933:247199..247338 | Clytia hemisphaerica | exon |
| TCONS_00071181-exon-scaffold_6-1510915933:246498..246929 | TCONS_00071181-exon-scaffold_6-1510915933:246498..246929 | Clytia hemisphaerica | exon |
| TCONS_00071181-exon-scaffold_6-1510915933:245516..246220 | TCONS_00071181-exon-scaffold_6-1510915933:245516..246220 | Clytia hemisphaerica | exon |
| TCONS_00071181-exon-scaffold_6-1491911889:250712..250936 | TCONS_00071181-exon-scaffold_6-1491911889:250712..250936 | Clytia hemisphaerica | exon |
| TCONS_00071181-exon-scaffold_6-1491911889:247199..247338 | TCONS_00071181-exon-scaffold_6-1491911889:247199..247338 | Clytia hemisphaerica | exon |
| TCONS_00071181-exon-scaffold_6-1491911889:246498..246929 | TCONS_00071181-exon-scaffold_6-1491911889:246498..246929 | Clytia hemisphaerica | exon |
| TCONS_00071181-exon-scaffold_6-1491911889:245516..246220 | TCONS_00071181-exon-scaffold_6-1491911889:245516..246220 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_6 | supercontig | scaffold_6:245516..250936 - |
Blast
BLAST of TCONS_00071181 vs. Swiss-Prot (Human)
Match: CRY1 (Cryptochrome-1 OS=Homo sapiens GN=CRY1 PE=1 SV=1) HSP 1 Score: 80.8777 bits (198), Expect = 4.384e-16 Identity = 75/284 (26.41%), Postives = 124/284 (43.66%), Query Frame = 1
Query: 685 EPNGSNRNFLIMMFAVIMVIGIIQLADYPVWGLSLFHKDDIPYNKKTIPDTYSKFRQGVESKSEIRDLIPTPLTLNKLPPIKGASLGD-------IPTMEKLIGVQSYMQDNRTAVPLEGGESAGLKHLQKYLWDTDAISTYKETR---NGLLGEEYSTKFSIWLANGSLSPRQIYHEVKRYENQRVSNQSTYWSIF-ELIWRDYFKFVCWKYGRKVFYLSGIMGKHLPWKQDKIAFQKWCQGETGVPFVDANMRELLHTGWMSNRGRQNVASFLVK-DLKLDW 1500
EP G R+ I A + +I + ++ L I N P TY +F Q + SK E + IP +++ L D +P++E+L + D ++ GGE+ L L+++L ++ ++ R N LL T S +L G LS R Y ++ + N S S++ +L+WR++F R + +PW ++ A KW +G TG P++DA M +L GW+ + R VA FL + DL + W
Sbjct: 103 EPFGKERDAAIKKLATEAGVEVIVRISHTLYDLDKI----IELNGGQPPLTYKRF-QTLISKMEPLE-IPVETITSEVIEKCTTPLSDDHDEKYGVPSLEEL----GFDTDGLSSAVWPGGETEALTRLERHLERKAWVANFERPRMNANSLLAS--PTGLSPYLRFGCLSCRLFYFKLTDLYKKVKKNSSPPLSLYGQLLWREFFYTAATNNPRFDKMEGNPICVQIPWDKNPEALAKWAEGRTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISW 374
The following BLAST results are available for this feature:
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