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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00071233 ID=TCONS_00071233|Name=TCONS_00071233|organism=Clytia hemisphaerica|type=transcript|length=1204bp
TGATCCTAAAACAGCTACACGTATAAGAACTGTCGATGGAAAGCTCCAAA
TggatttgaaaattaatttcatgTTACTTTCTAGTAGTATTTTACTTTGC
TTCATTTATCaatcattttgttgtttatacGAATCGCAACAAGTTGAAAC
ATCTTTAAACAACGCAATTTCTATTGAGTCTGTAAGTTCAGCAGTGGAAT
GTATTTTAGAAtgtaaaagtttaaagaaaacaCCTTTCTATGGTGAGAAC
AAGGAATGTTATTGTTTGGATAGTATCCAACACAACAGTGACAACACTTC
AGTCAACGGTACCATTTTTAAGAAGGTGACAAATGCTGAAGAAGGAACCG
CTAACAATACTAAAATCACGCCCTCCACCGTCCCATATGTAGATCAACTT
GTGTCTTATCAAATCAGAGGAACCTTAAGCATGTTTTGCGGAACAGATGA
AGACACTAACTGTGAATTTTATGGCAATCTAAAATTTGAGATCGGAAATC
GtcctgaaaatcaaaacattgaagtGTGGTCAAGAAGCGGTTCGCAAAGG
ATCAGTAAACAAATGTCATTACCCTTTGCCCTCCCTTTCTCAGCAATCTT
TAACGAATATGAAAGTTTTGCGACGGATGTTGATAAGTATGTGGTACTCG
ATGGACAAATCAAAGAATGGGACTCCAATGGTTTTGATTTGATCGCTGAT
CTAAGTGGGcaactttttgctgtgaaaaacattttcggtaAATCCCAAAC
AAAGAAAGTTTCTAAGACCGACGCTTATGCTGAAGTGACAGTTAAGATTA
TTAGagtttaaaaatggttttcgtttGGTGCATGGTTATAGATTTTGAAC
TAAGAAACGCTCGAATTAGATGAAAGAATTGTTGGACATTTCATTTCAAG
TTGTTTAGCTTAATTGGCAAGACCAAGGACTATTTCATGCGAAGCCCAGC
AAGGTGGTCTTTTAGGCGAAAAGGGTACAGAGATGTGCCGCCGCTGCGTT
GAGCGGTGCATTTTTATGGGTCCCAGGAAGGGGTGCAAAATCACTGCAAT
GATAAAATCCATGTCGTGTTCTCCCTATTGGAAACAAAgcagaaaagaag
aatttttgaaaattgtatttaACAGAAagagtaattttttttgatccCAT
GGCAAACAAACCTTATTTACCAAACAAACTTACTTTAAGGGAATACATTA
TGAC Run BLAST on NCBI protein sequence of TCONS_00071233-protein >TCONS_00071233-protein ID=TCONS_00071233-protein|Name=TCONS_00071233-protein|organism=Clytia hemisphaerica|type=polypeptide|length=269bp
DPKTATRIRTVDGKLQMDLKINFMLLSSSILLCFIYQSFCCLYESQQVET
SLNNAISIESVSSAVECILECKSLKKTPFYGENKECYCLDSIQHNSDNTS
VNGTIFKKVTNAEEGTANNTKITPSTVPYVDQLVSYQIRGTLSMFCGTDE
DTNCEFYGNLKFEIGNRPENQNIEVWSRSGSQRISKQMSLPFALPFSAIF
NEYESFATDVDKYVVLDGQIKEWDSNGFDLIADLSGQLFAVKNIFGKSQT
KKVSKTDAYAEVTVKIIRV Run BLAST on NCBI transcript from alignment at scaffold_60:303897..306401+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00071233 ID=TCONS_00071233|Name=TCONS_00071233|organism=Clytia hemisphaerica|type=transcript|length=2505bp|location=Sequence derived from alignment at scaffold_60:303897..306401+ (Clytia hemisphaerica)
TGATCCTAAAACAGCTACACGTATAAGAACTGTCGATGGAAAGCTCCAAA
TggatttgaaaattaatttcatgTTACTTTCTAGTAGTATTTTACTTTGC
TTCATTTATCaatcattttgttgtttatacGAATCGCAACAAGTTGAAAC
ATCTTTAAACAACGCAATTTCTATTGAGTCTGTAAGTTCAGCAGTGGAAT
GTATTTTAGAAtgtaaaagtttaaagaaaacaCCTTTCTATGGTGAGAAC
AAGGAATGTTATTGTTTGGATAGTATCCAACACAACAGTGACAACACTTC
AGTCAACGGTACCATTTTTAAGAAGGTaaataaattgtaaatattgaaaa
aattgtcGAGCCATACCCCTATGATAAGTTGAAATCTGATATTCTGAATA
TGTAttttaaggaaagaaattttggcgggaatttataATCTGGCGGATGg
cgcaaaaagttttttcagagggtaTTAAATTTGGTGGACTGTGAGTTTCA
GAGGGAATCAAACTTGGCGGATggtggaaaaaagaaattttcaaattttc
aaatccgccaaaatttcttcacttaagGTATATCACAAAGCCTCCTGGTG
ataaaatatttccattttcACCCTCAAGGATAAATTACTCAGCCATTGGA
CCCCCCTGACATACTGTACATCACGATATTcatattttcgatattttagA
CTTTATTGAATCCCTAGACTTCTTTTACTTCTTTTTCTCAAAGGATAGTC
TCACTAATTTCTTATGGGAacttgcaaaaaaatttggtcaaCAAACTGAC
TTGAGTTTTtaagaaacaattttacaactTTCGCAAGTTTTTCGTTGACA
CCCACcggagtaaaaagctgtttattAGAAAAGAGATAATACCGTTTGTG
cattttcttttcgttttttaGGTGACAAATGCTGAAGAAGGAACCGCTAA
CAATACTAAAATCACGCCCTCCACCGTCCCATATGTAGATCAACTTGGTA
AGCATTTTACTTTAAATGGCCATTACCTTCCACCTCTTTTTTGACGACAG
CCTTCTTTAAGGCTCCAAATGAAAAATTCATTAGAAAATAACTGGTCATG
AAACACCATTGTTTTTCGAACTAAGTGAAATTGAGCCGACTGCAGTTGAA
ACGTCCCTCGATCAAGGGGTATGTTTGTGAACGCCTAGCGGGCACCTCAC
CTAAAACCGAGATTCTTTAttccgtttcttagtgagttccactttgacaa
ttttccgaaaaatataagcctttcaagtgctttaaCGCAAATTCGCATTT
TTCACTACTGCATGAGCTTTGAAAGCTAAAAGTAACGTCAAAATATCGAA
TATTTAGAGCCGAAAGCCCGGTCtataaactttcgaaaaagtcataAAGT
GGAGTAGACATTAGCCACAAACCACAAATAGCCACAAATTTGGTTTTTGT
CTAACAGGTTAAGACATGAATtccgtagaaaaaacgcgggtgctgtctag
tataggctagtgAACGCCCCCACAAGGTATAGAAATAAAAACCCCTTGTC
TTAAAATAGATCCCCCACAACAgtttcttttccaaaaattggtcaaactt
caagatggcggataaaTTAATTGAATGTCTTTGAGCTAACCAAATCTATC
ATGAAATTGAGATTAAAGTGATGTGATTATTTATTCATTCTATATTTAAC
AGTGTCTTATCAAATCAGAGGAACCTTAAGCATGTTTTGCGGAACAGATG
AAGACACTAACTGTGAATTTTATGGCAATCTAAAATTTGAGATCGGAAAT
CGtcctgaaaatcaaaacattgaagtGTGGTCAAGAAGCGGTTCGCAAAG
GATCAGTAAACAAATGTCATTACCCTTTGCCCTCCCTTTCTCAGCAATCT
TTAACGAATATGAAAGTTTTGCGACGGATGTTGATAAGTATGTGGTACTC
GATGGACAAATCAAAGAATGGGACTCCAATGGTTTTGATTTGATCGCTGA
TCTAAGTGGGcaactttttgctgtgaaaaacattttcggtaAATCCCAAA
CAAAGAAAGTTTCTAAGACCGACGCTTATGCTGAAGTGACAGTTAAGATT
ATTAGagtttaaaaatggttttcgtttGGTGCATGGTTATAGATTTTGAA
CTAAGAAACGCTCGAATTAGATGAAAGAATTGTTGGACATTTCATTTCAA
GTTGTTTAGCTTAATTGGCAAGACCAAGGACTATTTCATGCGAAGCCCAG
CAAGGTGGTCTTTTAGGCGAAAAGGGTACAGAGATGTGCCGCCGCTGCGT
TGAGCGGTGCATTTTTATGGGTCCCAGGAAGGGGTGCAAAATCACTGCAA
TGATAAAATCCATGTCGTGTTCTCCCTATTGGAAACAAAgcagaaaagaa
gaatttttgaaaattgtatttaACAGAAagagtaattttttttgatccCA
TGGCAAACAAACCTTATTTACCAAACAAACTTACTTTAAGGGAATACATT
ATGAC Coding sequence (CDS) from alignment at scaffold_60:303897..306401+ >TCONS_00071233 ID=TCONS_00071233|Name=TCONS_00071233|organism=Clytia hemisphaerica|type=CDS|length=2430bp|location=Sequence derived from alignment at scaffold_60:303897..306401+ (Clytia hemisphaerica)
GATCCTAAAACAGCTACACGTATAAGAACTGTCGATGGAAAGCTCCAAAT
ggatttgaaaattaatttcatgTTACTTTCTAGTAGTATTTTACTTTGCT
TCATTTATCaatcattttgttgtttatacGAATCGCAACAAGTTGAAACA
TCTTTAAACAACGCAATTTCTATTGAGTCTGTAAGTTCAGCAGTGGAATG
TATTTTAGAAtgtaaaagtttaaagaaaacaCCTTTCTATGGTGAGAACA
AGGAATGTTATTGTTTGGATAGTATCCAACACAACAGTGACAACACTTCA
GTCAACGGTACCATTTTTAAGAAGGTGACAAATGCTGAAGAAGGAACCGC
TAACAATACTAAAATCACGCCCTCCACCGTCCCATATGTAGATCAACTTG
TGTCTTATCAAATCAGAGGAACCTTAAGCATGTTTTGCGGAACAGATGAA
GACACTAACTGTGAATTTTATGGCAATCTAAAATTTGAGATCGGAAATCG
tcctgaaaatcaaaacattgaagtGTGGTCAAGAAGCGGTTCGCAAAGGA
TCAGTAAACAAATGTCATTACCCTTTGCCCTCCCTTTCTCAGCAATCTTT
AACGAATATGAAAGTTTTGCGACGGATGTTGATAAGTATGTGGTACTCGA
TGGACAAATCAAAGAATGGGACTCCAATGGTTTTGATTTGATCGCTGATC
TAAGTGGGcaactttttgctgtgaaaaacattttcggtaAATCCCAAACA
AAGAAAGTTTCTAAGACCGACGCTTATGCTGAAGTGACAGTTAAGATTAT
TAGagtttaaGATCCTAAAACAGCTACACGTATAAGAACTGTCGATGGAA
AGCTCCAAATggatttgaaaattaatttcatgTTACTTTCTAGTAGTATT
TTACTTTGCTTCATTTATCaatcattttgttgtttatacGAATCGCAACA
AGTTGAAACATCTTTAAACAACGCAATTTCTATTGAGTCTGTAAGTTCAG
CAGTGGAATGTATTTTAGAAtgtaaaagtttaaagaaaacaCCTTTCTAT
GGTGAGAACAAGGAATGTTATTGTTTGGATAGTATCCAACACAACAGTGA
CAACACTTCAGTCAACGGTACCATTTTTAAGAAGGTGACAAATGCTGAAG
AAGGAACCGCTAACAATACTAAAATCACGCCCTCCACCGTCCCATATGTA
GATCAACTTGTGTCTTATCAAATCAGAGGAACCTTAAGCATGTTTTGCGG
AACAGATGAAGACACTAACTGTGAATTTTATGGCAATCTAAAATTTGAGA
TCGGAAATCGtcctgaaaatcaaaacattgaagtGTGGTCAAGAAGCGGT
TCGCAAAGGATCAGTAAACAAATGTCATTACCCTTTGCCCTCCCTTTCTC
AGCAATCTTTAACGAATATGAAAGTTTTGCGACGGATGTTGATAAGTATG
TGGTACTCGATGGACAAATCAAAGAATGGGACTCCAATGGTTTTGATTTG
ATCGCTGATCTAAGTGGGcaactttttgctgtgaaaaacattttcggtaA
ATCCCAAACAAAGAAAGTTTCTAAGACCGACGCTTATGCTGAAGTGACAG
TTAAGATTATTAGagtttaaGATCCTAAAACAGCTACACGTATAAGAACT
GTCGATGGAAAGCTCCAAATggatttgaaaattaatttcatgTTACTTTC
TAGTAGTATTTTACTTTGCTTCATTTATCaatcattttgttgtttatacG
AATCGCAACAAGTTGAAACATCTTTAAACAACGCAATTTCTATTGAGTCT
GTAAGTTCAGCAGTGGAATGTATTTTAGAAtgtaaaagtttaaagaaaac
aCCTTTCTATGGTGAGAACAAGGAATGTTATTGTTTGGATAGTATCCAAC
ACAACAGTGACAACACTTCAGTCAACGGTACCATTTTTAAGAAGGTGACA
AATGCTGAAGAAGGAACCGCTAACAATACTAAAATCACGCCCTCCACCGT
CCCATATGTAGATCAACTTGTGTCTTATCAAATCAGAGGAACCTTAAGCA
TGTTTTGCGGAACAGATGAAGACACTAACTGTGAATTTTATGGCAATCTA
AAATTTGAGATCGGAAATCGtcctgaaaatcaaaacattgaagtGTGGTC
AAGAAGCGGTTCGCAAAGGATCAGTAAACAAATGTCATTACCCTTTGCCC
TCCCTTTCTCAGCAATCTTTAACGAATATGAAAGTTTTGCGACGGATGTT
GATAAGTATGTGGTACTCGATGGACAAATCAAAGAATGGGACTCCAATGG
TTTTGATTTGATCGCTGATCTAAGTGGGcaactttttgctgtgaaaaaca
ttttcggtaAATCCCAAACAAAGAAAGTTTCTAAGACCGACGCTTATGCT
GAAGTGACAGTTAAGATTATTAGagtttaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00071233-exon-scaffold_60-1491911889:303897..304221 | TCONS_00071233-exon-scaffold_60-1491911889:303897..304221 | Clytia hemisphaerica | exon |
| TCONS_00071233-exon-scaffold_60-1510915933:303897..304221 | TCONS_00071233-exon-scaffold_60-1510915933:303897..304221 | Clytia hemisphaerica | exon |
| TCONS_00071233-exon-scaffold_60-1575043694:303897..304221 | TCONS_00071233-exon-scaffold_60-1575043694:303897..304221 | Clytia hemisphaerica | exon |
| TCONS_00071233-exon-scaffold_60-1491911889:304818..304893 | TCONS_00071233-exon-scaffold_60-1491911889:304818..304893 | Clytia hemisphaerica | exon |
| TCONS_00071233-exon-scaffold_60-1510915933:304818..304893 | TCONS_00071233-exon-scaffold_60-1510915933:304818..304893 | Clytia hemisphaerica | exon |
| TCONS_00071233-exon-scaffold_60-1575043694:304818..304893 | TCONS_00071233-exon-scaffold_60-1575043694:304818..304893 | Clytia hemisphaerica | exon |
| TCONS_00071233-exon-scaffold_60-1491911889:305599..306401 | TCONS_00071233-exon-scaffold_60-1491911889:305599..306401 | Clytia hemisphaerica | exon |
| TCONS_00071233-exon-scaffold_60-1510915933:305599..306401 | TCONS_00071233-exon-scaffold_60-1510915933:305599..306401 | Clytia hemisphaerica | exon |
| TCONS_00071233-exon-scaffold_60-1575043694:305599..306401 | TCONS_00071233-exon-scaffold_60-1575043694:305599..306401 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_60 | supercontig | scaffold_60:303897..306401 + |
Blast
The following BLAST results are available for this feature:
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