|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00071235 ID=TCONS_00071235|Name=TCONS_00071235|organism=Clytia hemisphaerica|type=transcript|length=1997bpRun BLAST on NCBI protein sequence of TCONS_00071235-protein >TCONS_00071235-protein ID=TCONS_00071235-protein|Name=TCONS_00071235-protein|organism=Clytia hemisphaerica|type=polypeptide|length=508bp MSSISYNEICENAKLARENALLGQYDSALVYYQGLLQQIQKVLLQAKDPSRun BLAST on NCBI transcript from alignment at scaffold_60:335531..363734+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00071235 ID=TCONS_00071235|Name=TCONS_00071235|organism=Clytia hemisphaerica|type=transcript|length=28204bp|location=Sequence derived from alignment at scaffold_60:335531..363734+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_60:335531..363734+ >TCONS_00071235 ID=TCONS_00071235|Name=TCONS_00071235|organism=Clytia hemisphaerica|type=CDS|length=15270bp|location=Sequence derived from alignment at scaffold_60:335531..363734+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00071235 vs. Swiss-Prot (Human)
Match: KATL1 (Katanin p60 ATPase-containing subunit A-like 1 OS=Homo sapiens GN=KATNAL1 PE=1 SV=1) HSP 1 Score: 563.533 bits (1451), Expect = 0.000e+0 Identity = 317/505 (62.77%), Postives = 381/505 (75.45%), Query Frame = 3
Query: 51 ISYNEICENAKLARENALLGQYDSALVYYQGLLQQIQKVLLQAKDPSRKQKWQVARQEIAQEYEYVKDINRTLADFKRDQFNAPQPNPAPVVKRDYSEPPTRETRDPDVWPPPTPVERPSKPVSRPVVRNIRNDRNDEKSNRQARGKPAPKRNVKSSDGRSGASNKPAENKAPIKAKVDTGRXXXXXXXXXXXX-RFDGSGYDKDLVEGLERDIVQKNPNVRWNDIAELDEAKKLLNEAXXXXXXXXGFFTGIRRPWKGVLMVGPPGTGKTMLAKAVATECGTTFFNVTSSTLTSKYRGESEKLVRLLFEMARFYAPSTIFIDEIDSICSKRGTDNEHEASRRVKSELLIQMDGVSGNTAETDAQKVVMVLAATNFPWDIDEALRRRLEKRIYIPLPTAVGREELLKINLREVKCEDDVNLNELANMMDGYSGSDITNVCRDASMMVMRRCIQGLSAEEIKNLPKEKLELPVNQSDFKHALKKVSKSVSEEDIKKYEEWMKEFGS 1562
++ EIC+NAK RE ALLG YDS++VYYQG++QQIQ+ +DP+ K KWQ RQE+ +EYE VK I TL FK D+ P PV +D EP RDP VWPPP P E + P R R +R R E + ARG + S+ S + +K + +A + + D GRK ++ + + E +FDG+GYDKDLVE LERDIV +NP++ W+DIA+L+EAKKLL EAVVLP+ +P FF GIRRPWKGVLMVGPPGTGKTMLAKAVATECGTTFFNV+SSTLTSKYRGESEKLVRLLFEMARFYAP+TIFIDEIDSICS+RGT +EHEASRRVKSELLIQMDGV G D K+VMVLAATNFPWDIDEALRRRLEKRIYIPLPTA GR ELLKINLREV+ + D+ L ++A ++GYSG+DITNVCRDAS+M MRR I GLS EEI+ L KE+L++PV + DF+ ALKK++KSVS D++KYE+WM EFGS
Sbjct: 1 MNLAEICDNAKKGREYALLGNYDSSMVYYQGVMQQIQRHCQSVRDPAIKGKWQQVRQELLEEYEQVKSIVSTLESFKIDK-----PPDFPVSCQD--EP----FRDPAVWPPPVPAEHRAPPQIRRPNREVRPLRK-EMAGVGARGPVGRAHPISKSEKPSTSRDK--DYRA--RGRDDKGRKNMQDGASDGEMPKFDGAGYDKDLVEALERDIVSRNPSIHWDDIADLEEAKKLLREAVVLPMWMPDFFKGIRRPWKGVLMVGPPGTGKTMLAKAVATECGTTFFNVSSSTLTSKYRGESEKLVRLLFEMARFYAPTTIFIDEIDSICSRRGTSDEHEASRRVKSELLIQMDGVGGALENDDPSKMVMVLAATNFPWDIDEALRRRLEKRIYIPLPTAKGRAELLKINLREVELDPDIQLEDIAEKIEGYSGADITNVCRDASLMAMRRRINGLSPEEIRALSKEELQMPVTKGDFELALKKIAKSVSAADLEKYEKWMVEFGS 489 The following BLAST results are available for this feature:
BLAST of TCONS_00071235 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.