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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00071236 ID=TCONS_00071236|Name=TCONS_00071236|organism=Clytia hemisphaerica|type=transcript|length=6176bpRun BLAST on NCBI transcript from alignment at scaffold_60:365294..381093+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00071236 ID=TCONS_00071236|Name=TCONS_00071236|organism=Clytia hemisphaerica|type=transcript|length=15800bp|location=Sequence derived from alignment at scaffold_60:365294..381093+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00071236 vs. Swiss-Prot (Human)
Match: ARI1B (AT-rich interactive domain-containing protein 1B OS=Homo sapiens GN=ARID1B PE=1 SV=2) HSP 1 Score: 158.688 bits (400), Expect = 1.953e-38 Identity = 100/291 (34.36%), Postives = 158/291 (54.30%), Query Frame = 1
Query: 4765 KQSTAFVGIPDNKHSLLQRCVAMSNVFRSLSFIQGNDSVLANHSGLLSICAFILLYKHEHAVTDHSQFKLGFEERTVPNNALSDDVSDTWWQSLYSIRENTLVLLANIGGHLNLKQIRDDIREPLVNGLLHWVVCGSSQALDPLPTAPGSHALSAQRLCIEALAKMTINHQNVKDIMRYPNDSVIQEMGDVLVRHMANKKVIPNREFAIILVDNLANSERF-SKVLATRKSAIRNICTFLYDAEKNTSNYLSSGGRVQPGLNAEEICGTSISLLRRAVNILLSIAKIPCNR 5634
+ T I + SL +RC+ +SN+ RSLSF+ GND+ ++ H GL+ I ++L HEH + EE A S D + WW L +R+NTLV LANI G L+L + I P+++GLLHW+VC S++A DP PT + LS QRL +E L K++I NV I+ P S ++ LVR++ ++K RE ++ L+ NLA + ++ +A +K +I N+ +FL D + Y S + + + S+ ++ RA LL++A++ NR
Sbjct: 1913 RDETPLCTIAHWQDSLAKRCICVSNIVRSLSFVPGNDAEMSKHPGLVLILGKLILLHHEHPERKRAPQTYEKEEDEDKGVACSKD--EWWWDCLEVLRDNTLVTLANISGQLDLSAYTESICLPILDGLLHWMVCPSAEAQDPFPTVGPNSVLSPQRLVLETLCKLSIQDNNVDLILATPPFSRQEKFYATLVRYVGDRKNPVCREMSMALLSNLAQGDALAARAIAVQKGSIGNLISFLEDG-VTMAQYQQSQHNLM-HMQPPPLEPPSVDMMCRAAKALLAMARVDENR 2199 HSP 2 Score: 125.176 bits (313), Expect = 2.855e-28 Identity = 52/102 (50.98%), Postives = 80/102 (78.43%), Query Frame = 3
Query: 3303 LKREFAFPPDSVEATKPVLRKRKKLTSKDLGPVEAWRIMMSLKSGLVSECTWAIDTLNILLADNNTITYFHLKQLPGLLDTLMDHYRRSMGNLFDDFSFTEI 3608
++RE FPP SVEA++PVL++R+K+TSKD+ EAWR+MMSLKSGL++E TWA+DT+NILL D++T+ F+L QL G L+ L++++R+ + ++F E+
Sbjct: 1589 IRREITFPPGSVEASQPVLKQRRKITSKDIVTPEAWRVMMSLKSGLLAESTWALDTINILLYDDSTVATFNLSQLSGFLELLVEYFRKCLIDIFGILMEYEV 1690 HSP 3 Score: 84.7297 bits (208), Expect = 6.093e-16 Identity = 46/134 (34.33%), Postives = 76/134 (56.72%), Query Frame = 3
Query: 1962 DQLSKVYDVIQDEEKRNFFDKYLAFMSVNGTPVTKLPVIGNKALDLYSLFRSVCERGGIQQVMEKRIFKEILTCLNLPVEDATVAYMLKAQYMTYLHAYELKAKES------LLKQWGQKKTLENSVPSTANSA 2345
++++KVY++ + E++ + D+YL FM G+PV+ LP +G K LDL+ L+ V E GG+ QV + + ++E+ T LN+ + + LK QY+ YL A+E K + + KK + PS ANS
Sbjct: 1042 EKITKVYELGNEPERKLWVDRYLTFMEERGSPVSSLPAVGKKPLDLFRLYVCVKEIGGLAQVNKNKKWRELATNLNVGTSSSAAS-SLKKQYIQYLFAFECKIERGEEPPPEVFSTGDTKKQPKLQPPSPANSG 1174 The following BLAST results are available for this feature:
BLAST of TCONS_00071236 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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