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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00071242 ID=TCONS_00071242|Name=TCONS_00071242|organism=Clytia hemisphaerica|type=transcript|length=3341bpRun BLAST on NCBI protein sequence of TCONS_00071242-protein >TCONS_00071242-protein ID=TCONS_00071242-protein|Name=TCONS_00071242-protein|organism=Clytia hemisphaerica|type=polypeptide|length=627bp MSRAQAESVIKNIIREITHECAGKGQVVSETLVAFMVKAVVLDPDNGFNVRun BLAST on NCBI transcript from alignment at scaffold_60:382499..397738+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00071242 ID=TCONS_00071242|Name=TCONS_00071242|organism=Clytia hemisphaerica|type=transcript|length=15240bp|location=Sequence derived from alignment at scaffold_60:382499..397738+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_60:382499..397738+ >TCONS_00071242 ID=TCONS_00071242|Name=TCONS_00071242|organism=Clytia hemisphaerica|type=CDS|length=26376bp|location=Sequence derived from alignment at scaffold_60:382499..397738+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00071242 vs. Swiss-Prot (Human)
Match: CF206 (Cilia- and flagella-associated protein 206 OS=Homo sapiens GN=CFAP206 PE=1 SV=2) HSP 1 Score: 650.203 bits (1676), Expect = 0.000e+0 Identity = 336/622 (54.02%), Postives = 442/622 (71.06%), Query Frame = 1
Query: 145 QAESVIKNIIREITHECAGKGQVVSETLVAFMVKAVVLDPDNGFNVDRTLTKTDVDKLIRTCVFRLLEKDSPSLETIRMQVYFDMNYTTRTEFLDEHRRVLEGRLQPVIREITDSRARTRDELEVLYTRIVSCVLLRSGLGSPTDISVVREATAALQSVFPQTELGTFMSLVKKDKERQLVELALIVTGIRLFNRECGKGGDGIDEIPTVLQEAIPNAIQNLDEELRKITSQVFLYTAVLENACLNHEFPDTLEWAKLKDSHFNSRQHEHFLNVLMHDLNDCKEHVESLRLKYLVQMDNVKDTVSSKTAVPTAQVYPQFIGLAHLWTAFQDEMVLLSVLTNLISSLDQFAQVHVSMFTKEVLDDYLNEDGLIKSDMDRMNMTNGNEHRINAAKILNKKIEVLFPESTKNFTHLPIYARGYCPWSLYTYNGLLVPSNPNIGILQHSNVYYAFASAEGAYEFASDPDAFCKGVADVAKKSPELIQLLELHKQFAAITPYTQQGKEKSFLPYPVTKSDMGTQTDTHPMETNLVKTYEWNEWEXXXXXXXXXXXXXXMTHSVQTELSNYKRENTTQSYPPKDQETQTKRESYTNVPKPSVYIAGLRGGSTTRTKMTKVDLTRDVKD 2010
QAESVI++IIREI ECA G++VSETL+AFMVKAVVLDP NGFN+DRTL K+DV L++ C+ RLL+ +PSL+TI+MQVYFDMNYT R EFL+EH RVLE RL V REITD+RA ++ELE LY +I+S VLLRSGLGSPTDI VRE TAALQSVFPQ ELGTF++L KKDKERQL EL +IVTGIRLFNR+CGKGG+GID++P VL AIP +Q++D +L SQV+ YTA+LE A + L+ LK++ +N RQ+E FL +++ D+ + VE + + ++ +K T+ SK AVPT+QV+P FI L+ LWT+ QDE +++ VL+NL + + F H F + V+ +LN +K+D+ RM E R+N A +K+E LFPE+T NF L I RG+C ++ +GLL+P NP IGIL++ YY F S + AY FA +P+ + V + AKK+ ELIQLLELH+QF PY+Q P+TK + TQT+TH + +V++YEWNEWELRRKA+KLANLR+K+THSVQT+LS+ +REN +Q YPPKD TQ+ RE T VP+P +Y+AGLRGG + T KV+LTRDV +
Sbjct: 5 QAESVIRSIIREIGQECAAHGEIVSETLIAFMVKAVVLDPSNGFNMDRTLMKSDVQNLVKLCMTRLLDTKNPSLDTIKMQVYFDMNYTNRVEFLEEHHRVLESRLGSVTREITDNRACAKEELESLYRKIISYVLLRSGLGSPTDIKTVREVTAALQSVFPQAELGTFLTLSKKDKERQLKELTMIVTGIRLFNRDCGKGGEGIDDLPAVLHVAIPATMQHIDYQLETARSQVYRYTAILEKAANDPLMRAELQPYMLKEALYNIRQYEVFLQIILSDIITGAQEVEMMTKQLGAHLEQLKMTIKSKIAVPTSQVFPIFIALSTLWTSLQDETIVVGVLSNLFTHIQPFLGAHELYFPERVMQCHLN-GATVKTDVCRMK--EHMEDRVNVADF--RKLEWLFPETTANFDKLLIQYRGFCAYTFAATDGLLLPGNPAIGILKYKEKYYTFNSKDAAYSFAENPEHYIDIVREKAKKNTELIQLLELHQQFETFIPYSQMRDADKHYIKPITKCESSTQTNTHILPPTIVRSYEWNEWELRRKAIKLANLRQKVTHSVQTDLSHLRRENCSQVYPPKDTSTQSMREDSTGVPRPQIYLAGLRGGKSEITDEVKVNLTRDVDE 621 The following BLAST results are available for this feature:
BLAST of TCONS_00071242 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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