TCONS_00071249 (transcript) - C. hemisphaerica

Overview
NameTCONS_00071249
Unique NameTCONS_00071249
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1736

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00071249 ID=TCONS_00071249|Name=TCONS_00071249|organism=Clytia hemisphaerica|type=transcript|length=1736bp
ccaGTTTATCCCAGCACGCAGCATGCGTGATCACCCTGTAAAATGATTGG
GGGCGAAGCGAGATTTTAACCCAATCCAAGACTGCAAAACATTGACCATC
ATTCTTTGAGCAACAAGATTAAGGTCTCCCAATCAGGTGGCCCTGGCAAA
TCGCGAAATTCAACTAACAAATATTTAAGTTACAATGAGAGGTATTGAAG
TTGAATTTACCATGTTTTGTAAAAGTTTGACATCCATCCAAAGTCGCCAT
TCGCGTCAGCTGTCTTTTCGCTATGGAATTCTTGACTGCATGAACATTTG
GGATTTCCCTCTCGAAATGTGAAATTTGCCTCGATTATTAGCTTGTTTAA
AATACCGAACGATTTGTAGCCTCAGCGCTGCATTAAAGTTTAACTGATTC
TGTTACATTCACTGAATACGGGCTTGATTTTTCTCGATTACTAACAGTCT
GCGAAATATACAAAaccatcaaaacattcgaagaTGAACAAGTGAGTCTT
TTACAGTGATCTACCAAAATGCCACGAGGTCCAAAGAAGCACCTCAAGAG
ACTCAATGCCCCAAGGCATTGGATGTTGGACAAGCTTAGTGGAAACTTTG
CTCCACGCCCAAGCTCCGGTCCACACAAGTTGCGCGAAAGTCTCCCACTT
ATTGTTTTCTTGAGAAATCGCTTGAAGTATGCCTTGAACTACACTGAAGT
TGTCAAGATCATGATGCAAAGAACCATCCAAGTTGATGGAAAAGTTAGAA
CCGATGTTACATATCCAGCTGGATTTATGGatGTTATCACCATTGAAAGA
ACTGGTGAATTCTTCCGTCTTCTATTTGATGTCAAAGGACGATTTGTTTG
TCATCGTATCAGTCAAGAAGAATCTGCTTACAAACTTGGAAAGGTCAAAC
GTGTTGCTGTTGGCAAAAACACTGTTCCTTATCTGGTCACACATGATGCC
AGAACCATCAGATACCCAGACCCAGACATTAAAGTAAACGATACTGTTGT
CATTGACATCAAGACAGGAAAAATTACTGACTCAATTAAATTTGACACTG
GAAATACTGTCATGGTCATTGGTGGACGTAACACCGGTCGTGTTGGAATC
ATCACCAACCGTGAAAGACATGCTAGCTCGTACGATATCGTCCATATTAA
AGATGCTGCTGGTCACACTTTCGCTACTCGTCTTAGTAACATTTTCATCG
TTGGCAAAGGAAACAAAGCCATGGTCACCTTACCGAAAGGAAAAGGTGTT
CGTCTCAGTATCGCTGAGGAACGTGACAGAAGACTCGCACACAAATAAAT
ATGTAAATTTCTGTGGCTCACTTTGGTGGAAAAAGATAGATccgaaaaaa
attaatattgtcCCTACCTTGTccagactgtacataatgcgcgcatcaga
ttgttttttatcttttttctgttttgtttttctggtctgggattcgaatt
tcaaatgtaaacattccattgaaaacgttcgaaacgatcgtttttgcgcg
cacaataatgtcaatcaaattactcgccaagatttcctttgcgaaccgga
aagcggttggtagatcattaagcagacctatactacctgtggttttgtag
aggtctgcgattcagactatattatttcaggagctattaccattgagttt
caagccgaaggctagaggtcaatctctttggtaggatttgaagccaacaa
atcctaccaaagttgcgcggccttgagcgacccgcc
Run BLAST on NCBI

protein sequence of TCONS_00071249-protein

>TCONS_00071249-protein ID=TCONS_00071249-protein|Name=TCONS_00071249-protein|organism=Clytia hemisphaerica|type=polypeptide|length=259bp
MPRGPKKHLKRLNAPRHWMLDKLSGNFAPRPSSGPHKLRESLPLIVFLRN
RLKYALNYTEVVKIMMQRTIQVDGKVRTDVTYPAGFMDVITIERTGEFFR
LLFDVKGRFVCHRISQEESAYKLGKVKRVAVGKNTVPYLVTHDARTIRYP
DPDIKVNDTVVIDIKTGKITDSIKFDTGNTVMVIGGRNTGRVGIITNRER
HASSYDIVHIKDAAGHTFATRLSNIFIVGKGNKAMVTLPKGKGVRLSIAE
ERDRRLAHK
Run BLAST on NCBI

transcript from alignment at scaffold_60:669560..679938+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00071249 ID=TCONS_00071249|Name=TCONS_00071249|organism=Clytia hemisphaerica|type=transcript|length=10379bp|location=Sequence derived from alignment at scaffold_60:669560..679938+ (Clytia hemisphaerica)
ccaGTTTATCCCAGCACGCAGCATGCGTGATCACCCTGTAAAATGATTGG
GGGCGAAGCGAGATTTTAACCCAATCCAAGACTGCAAAACATTGACCATC
ATTCTTTGAGCAACAAGATTAAGGTCTCCCAATCAGGTGGCCCTGGCAAA
TCGCGAAATTCAACTAACAAATATTTAAGTTACAATGAGAGGTATTGAAG
TTGAATTTACCATGTTTTGTAAAAGTTTGACATCCATCCAAAGTCGCCAT
TCGCGTCAGCTGTCTTTTCGCTATGGAATTCTTGACTGCATGAACATTTG
GGATTTCCCTCTCGAAATGTGAAATTTGCCTCGATTATTAGCTTGTTTAA
AATACCGAACGATTTGTAGCCTCAGCGCTGCATTAAAGTTTAACTGATTC
TGTTACATTCACTGAATACGGGCTTGATTTTTCTCGATTACTAACAGTCT
GCGAAATATACAAAaccatcaaaacattcgaagaTGAACAAGTGAGTCTT
TTACAGTGATCTACCAAAATGGTGAGTCCTTACAGACTGGAGAATTATGA
TAATATTTTAACTTTATCTGCTTCTATCTTTACAACCCAATGCTGTATGA
ATCGTGTAATGATATGGTTGAACACCTCAATGTTTGAAATTTATCATTCA
CTTATTATTTCAGCCACGAGGTCCAAAGAAGCACCTCAAGAGACTCAATG
CCCCAAGGCATTGGATGTTGGACAAGCTTAGTGGAAACTTTGTAAGTACT
GTCATTTTCTTCCTCTATCACCATTGCATTTAACACCCTTGATGGTTTAA
AGGATATAAAGTTACGGAAACGTTTCATTAATTTCTTTAGGCTCCACGCC
CAAGCTCCGGTCCACACAAGTTGCGCGAAAGTCTCCCACTTATTGTTTTC
TTGAGAAATCGCTTGAAGTATGCCTTGAACTACACTGAAGTTGTCAAGAT
CATGATGCAAAGAACCATCCAAGTTGATGGAAAAGTTAGAACCGATGTTA
CATATCCAGCTGGATTTATGGGTAAGATAAATATGTGATTGGGAGAAGTT
AACAAAGTTACCATAAAATGATTTACTGGTTTGGTTACAAgaagttgttt
ttcttttatggTTAACGACTGAGAGTAATGTGGGTTAGCTGGATCAATAC
TATTTATGGATAAAGCTTCAAAAATAAGCTAAATTATTAAATGGTGGAGC
TTGTTGGAGACCTTGGAATCTTTAAATGGTGAACAACACAAGTTCATTCC
ATGTCAAAAGTTACTTTTCCATGTCATTTTAAACTGGTTGTTGTTTTGAT
AACCAAACTAAATTTGTGTTATTTACTTTCTTGAATTTGATAATCTTAAA
TTTTGCAAGTAGGAACTTTCGAGAATCAGGacaaaaatggaaatttttat
taaagGTGACATATAGAAATTTTATCTTCTTGACTTATTGGGCCTAACAG
GCTAGTAAATGCCATAAATCTTGCAATTTTAAGTTTGAAGTTCTGCAAAT
TTTCTTTGACAAGaattttttcgtaaaaatttcaaaagcttgTGAAAGCT
CGTTTGCTTAAATTAGTGTATTGTGCCAGAAAAGCCTTTTGAAGCATTGC
CAAAAGTTAATCTACTATTAAATCCCCTTGATGTGTCTTCTTCTTTTACC
ATGATgtatgtttttttaagaacaaaatttacgagaacataaggcttcaa
tggctgAAATAATATATTAAGAACATTCATAGTGAGAAAGGGGGAcctaa
cttttcaaaaaaggcttTATATGGGTGTAAAAGAGGTTTTCCGAGGTTTG
TGGGCCAacttttgaatgttcttataaaaggacGTGTACTTGCtatgggc
tattccaaaaaaaaaaggtttccaTCTTAAATTTTGAATGACTGCTGTGG
ACTTTAGgcgaaccctaaaaatatttttgtttccggtccaccgggtgacg
aaaaaaacactcacccggccggccgcaaaaaaaatttttttgctaaattt
cgatcccaaaaaatcgattttttaaagcactcgtagaggtccagacgatg
tcaattgaacgaatcgaacgccgaatcaatttaacgcaatcgaatgattg
aaattcgattgccgaacgcaatcgaatgccaatcgaatattaccgcgatt
ttctcaattgattcgattgcgttcgattagtgcctggattcgattgattc
gattgcgttcgattgactaatgtattcgattgattcgattgattcaaNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNtatcaatcgaacgtaatcgaatatcaatcgaatttt
acccagaattttacgttcgattgatattcgattgcgttcggcaatcgaat
cgcaatcattcaattgcattcgattgattcgattggaattttcgttcgat
tccgttcgattgacatcgtctagAGAGGTGCTTCGtataagaaaaattca
cgtaacctgcagtaaacatgtgaACCTGtattttctagaatccaggctaa
aacaGCTCAAGAACTAAAAACCGTGAAAATCTTCGTTGTTGAACAAAGAA
GATATAATATAACATCTACTTTGCTACCCTTATCATCTTGCAGAGAAAAG
GTCCGTTCGTCGCgtagatttatctttgatacttaacctccctaattttc
atcgtttataatttcaattgtgttacaatatctctaagaactggacactc
tctttcattttgaatatttatcttcaattgCTAAAGGCTCCAAACCGTGA
TTACgaagtgaacttttttgagaaaaaagtagagtgagagaaacatttcc
ccaattttttaaatcctcactttatgaatgtttctttttattttactcac
aaatcagcatgattccttttataaaaacaaagctgtttatataaaaaaac
attcttaaaagttgagttgcaagcaagaattaacaaaaacaatgcagggc
ttagtttgagatgaataaaatttcatttttataacaggacatgttcataa
aaaaagGCAAGTTTTTGAGGTTTTTGTGACATTTCATACCTATGTTACAA
AATTAGCCTACATCTTTCTAACAGAATTTGATCCTTCTCAAAGAATAACA
TGATGGTTAGCTCATTAGATTTCTGTTGGCAAATTAGGTAACAGCGATTT
CTATAGTTTAGTATATTTCAAGTTATGACAATTTGAATCTTGCCAGAATT
CTGGCTAATGATGTAACATTGCAAATTTTAGAAAAGCTGGCTAATGACTC
TAAAACAGCTATTAGGCAATATTCACATAAAAAATGGTACATTAGCATCA
TTAGGGGGTTGAAGGGGATGCTATTGGTAATGCATTTGGGTTAAAAAGTT
GATCGGCTAATGGTGTAACAAGGCTGAAATATCCCAATGTGCTGTTCCAT
TTAAGCCAGATTTTGTCGACATAACAACGAATCCTTAGTCAAAAGGCAAT
ATATTGTTTAGTTCATGCATTGTTTTAGACAATATTATGACTTTGCCAAT
AAATGATAGGACAAACTGGCTAATATGGTAACATTCAATCCTATAACTCT
AATAATGGTCCCTTTTCAGGCCCATTGATAGAAGTATTTATTAAATTGGC
TGGTATTCAGACTTTAGTCTAAGTTACATAATTCACATCTCAAAAATAGC
ATCTCAATGATAGATAATTCACTTGATGAACCTTCCAAAagcctttattt
tcattaatcAGCCAAAATTGGCTAAATTTGTAACAAAATTGGGATAtcca
attttattacttttttagcCGTTTCTGGGGAATGAACAAGTTGTTTAACA
GCACTATCAATATCATTCATGTTTCAATCAACCTTTTGTAATACTTATTT
CAACATCACTTTGCAATGAGAGGTGTATGAGAAGTCATACTCGCCGAAGC
TTGGCTGTCAGTCAGTATAACATGGGGGAAACACGATAATTTCATTGAAT
TAATGGGATATCAATCTCAATCTTCATTTGTTGATGGTTACACTTTTAGC
CTATTCCTGTTAAGAATGTTTTATCTTGAAGTacttatttcataattttt
tttgttccatAAGTTCATTAGTTTTTTTAAAGAAGGTGTCAGAAGTTCCA
TAGCTGATAGCTTAGCATTACTTCTTAATTACATTTTTATTAAAACAACT
AAGACAACAATATAATATGTTCTGTTACACTTTAGCCTATTCCAGTTAAG
AATGTTTTATCTTGAAGTTCTTATTTTATAACTTATTTTGTTCTATTAAA
ACTCATTATATAAGTCTTTTTTTAGAAAAAACTTTCAGAAGTTCCATAGC
TCAGCATTACTTCTGAATTATGACGTTTTCGATAAAACAAAAATATGTTA
TATTTGTTACACTTTTAGCCAGACATGAGCCTATAATTAAAAACTTTGAC
TTTAAGACAAGTAATATAAAATAATCCTTTATATTTTTGAATTCTGTTGA
TCCcaattctttaattttgaaactataaaattttgaaattggtcGAACAC
tgtttttgttacattttagccaaaatgtgtattttaTCAAGAAATAAGCC
AATTTAAGGTATTTCCATAGCTAAGTTTATAGTCTAGATAGTATATGGTA
ATTGTTTAAGTTCCATAAATTctaaattattgaaattatgaatagaagtt
gattttctgagCATGTTACTTCTTTAGCCAATATCTTCAGTTTAACGATG
TGCAATTTCCGCGAATAACAACAGCGGGAAGTTAACATACTAAAGTTTCA
TTTCCAAGCCTTGCTCTAATTTTTTTcacctgaaataaaaatttaggtca
tttataatgaaaatgttacatttttagccgtttttggcaaaataacctac
aaatccaaaatctttcaattctaGTGCCTTTGGACCTTTGTTACCTTTTt
agccaaaaaattttattgatgtAGCGGCTATTTTGAAGGTTTTATCAACA
TAAGAccaatttttcctattttttgaatgtcacaGAGCTTGCCTtatttt
atgaacatgtccaacaatgatcaggataaaaccttcattccaagtgattt
ctaggcgtgcattttacagtagaatataaaatatcacgtgcgataaatca
cacgcctcaaaaactgattcacTAAAGTTTTCCACTAGAGCCCTAACGAT
GATGTACGaaaaaatgcggccgggtgacgacgaaataaattttcacccgg
ccggtggaccggaaacaaaattttttttcgggttCGCCTTATTTCCTTTA
TTAACGCAATAGtttcactttcttttgtttagatGTTATCACCATTGAAA
GAACTGGTGAATTCTTCCGTCTTCTATTTGATGTCAAAGGACGATTTGTT
TGTCATCGTATCAGTCAAGAAGAATCTGCTGTAAGGCTTCTTTTCATTGC
CATTTTTAGAATTACTTCTCTTTGAGATCAGCTGAGTTTGAAATGTGATC
ACAAGTTTAAGCTAAATTGTCACAACAGAGTTGAGAAGATTACCTTGAGA
GATTAATTTTTATCTTAAATTGCAACTTTTGACTTGTTGTGAAAAATTAG
TCTCGCCAAAATCctgttttttttactaaaaccctaggaaaaaagaaatt
ggatgaaatcaaagtgaaatttttatATTCTTTATTAACAAAAAACTCCA
GAAATTAATTCACTTCAGGTTATGATAATATGTAATGTTGATAGTTGAAA
AGGAATTTTGGGGTTTTCAGAGAAAAACCTTTGAATTTCCACAAAAAAGG
AGcccttttttttctctttgtaaGTATACTTAGACCTGGATTTGGTGGAA
AATTAGTGATCTTTGAAAGATTAATTCCATTTCAAACAAATCATTTTatt
cagaaaaataaatatcacTAGCTTCATATGAGCTTTCTAGGCATGACTCA
GTCTCCAAAGAATATGCTTATTGAAACATGTACTTTTCTATCCAGTACAA
ACTTGGAAAGGTCAAACGTGTTGCTGTTGGCAAAAACACTGTTCCTTATC
TGGTCACACATGATGCCAGAACCATCAGATACCCAGACCCAGACATTAAA
GTAAACGATACTGTTGTCATTGACATCAAGACAGGAAAAATTACTGACTC
AATTAAATTTGACACTGGAAATACTGTCATGGTCATTGGTGGACGTAACA
CCGGTCGTGTTGGAATCATCACCAACCGTGAAAGACATGCTAgtaagttc
ttctttttctgttttaAGAGTTTTGTATACCTGAAAATAGGTAGCTGCAA
TTAGAGCATCAGTGATCTGTTCATGAAATTGATGCCCTGCTGGTAGCTAA
TAGAAACTCACTTACATGTATGGAGCTTCTTTTCCTTGAATGATCTAAAG
TTTACATGTAttacattttcaattataacaAATCCTGTCAGAAATGCTAG
TTGTGTTTTAAAAGAGTCTGGAACTTTAAACTTGACAAACATGTGCCACC
CATAGTGGgcacaccccccccccttttaaaaaaggggggtttgagaattt
tactggatttaaaagaagggggcttgtgaaaatttcaaataaaaggggGG
GCTTGGACTAAAAGAGGGGGGTTAATTTTTTAAGGGGGCTTGGAAGATTT
GGCAATTTGCAAAAGAGTGTTTTCCATTCATTNAAAAGGGGAGGCTTGGA
CTAAAAGAGGGGGGTTAATTTTTTAAGGGGGCTTGGAAGATTTGGCAATT
TGCAAAAGAgtgttttccattcatttttaaatttctcaacgATTATTATG
TTTCCATTCATTTGTATGAAGCAAAAACTCTGTTTCTACAACTCTTGATG
GAGTATGAGGGGTGTTGAACTTAAACCTGGGAAAAAGAGGGGTGCCATTT
TTAAGGGGGGCTTGATACCCCTCTGCCCACTATACAACCCTTTGAATcat
aaccctattcatactagggggggctgttcctgtacttccccttaactttt
gatctagtgatGAAATTTGACACACAAGATCCTTGCCATATAAGCAACTT
TTGACAAGGGGTCCTAATAAGGATAGTTTGTAGGGGGTTCGGAATACCGT
TTTcctgtcaaaatttttgctgaatcccagaatcccaaaaattgaaaaaa
ataataacaccgtcataCAGGTTTGTACATGTGCAAATATctgcataatg
acaaaaaataaggctgCACCATCTTATtttgaaataccgttttcccgtct
ttttttgtcaaatacCGTACTAAAAGGGCCAGTCctgtcacaccgtaaaa
gtacaaactctacaccccccccccaaataagaTCTGGtgggagaaaattt
tcaaaaaataaactgTGGGGGTCTGTTTAATTTTGAACCTAAGAATAGAT
TCCTTTGAGCAACCTAATTCGGAAAAAAGAGCTGCAATTAGAGCATCAGT
TTTCCTTTCATGATATTGATGCCCTGCTGGTAGCTAATAGAAACTCACTT
ACATGTATGGAGCTTTGTTTCCTTCTATGATCTAAAGTTTACATGTATTA
CATTTCACTGGATTCATTTTGTCTTTTGCTTGTTTTGATATATTTGTAAG
ATTGTCTTTTTATTCTGATGTATAGGATATTTTGTTTGTGTTGTATATTC
CAAACTTTCTTTGGAGTGTGACATTAGGATGACACAATATTGCTGTACGC
TTTCCTCTTAACAGTTATTTTGTATTGTTAAAGAGATATGTTAATTACAG
CAAAGATGAACTGTTCTGACGCTATCCTAGGTTGTTTTTATGTAAAAACC
TGGGACGATTCATAACTACATTTTATTATCGACTCGACTTATGAAATTGG
TTTTAGAAACATTTTGTGACTGTATCTTTCGTGTATTTTAGTTTTACACT
GGTCCTTCTAAAGGCGGTGCTAAACTATCTGCTGTTCATGCTTTCTCCCA
GTTGGGTTCTGTCTCAATTTtgggaaatttaaaaaacagcAAAGATTAAC
TGATTTGACGCTATCCTTTTCCATTTCACTGTGCTGGAAAAGGACGATTC
AAAACAACAAGCTTCAAGCGACTTTTCATATGACTTCGTTTGTTCCTGTT
ATCTCACGTGGTTTCGCGATGTTTCTTTAATGAACTAAGACTAATCGATA
TACCTTTTATCTCGACAGGCTCGTACGATATCGTCCATATTAAAGATGCT
GCTGGTCACACTTTCGCTACTCGTCTTAGTAACATTTTCATCGTTGGCAA
AGGAAACAAAGCCATGGTCACCTTACCGAAAGGAAAAGGTGTTCGTCTCA
GTATCGCTGAGGAACGTGACAGAAGACTCGCACACAAATAAATATGTAAA
TTTCTGTGGCTCACTTTGGTGGAAAAAGATAGATccgaaaaaaattaata
ttgtcCCTACCTTGTccagactgtacataatgcgcgcatcagattgtttt
ttatcttttttctgttttgtttttctggtctgggattcgaatttcaaatg
taaacattccattgaaaacgttcgaaacgatcgtttttgcgcgcacaata
atgtcaatcaaattactcgccaagatttcctttgcgaaccggaaagcggt
tggtagatcattaagcagacctatactacctgtggttttgtagaggtctg
cgattcagactatattatttcaggagctattaccattgagtttcaagccg
aaggctagaggtcaatctctttggtaggatttgaagccaacaaatcctac
caaagttgcgcggccttgagcgacccgcc

Coding sequence (CDS) from alignment at scaffold_60:669560..679938+

>TCONS_00071249 ID=TCONS_00071249|Name=TCONS_00071249|organism=Clytia hemisphaerica|type=CDS|length=4680bp|location=Sequence derived from alignment at scaffold_60:669560..679938+ (Clytia hemisphaerica)
ATGCCACGAGGTCCAAAGAAGCACCTCAAGAGACTCAATGCCCCAAGGCA
TTGGATGTTGGACAAGCTTAGTGGAAACTTTGCTCCACGCCCAAGCTCCG
GTCCACACAAGTTGCGCGAAAGTCTCCCACTTATTGTTTTCTTGAGAAAT
CGCTTGAAGTATGCCTTGAACTACACTGAAGTTGTCAAGATCATGATGCA
AAGAACCATCCAAGTTGATGGAAAAGTTAGAACCGATGTTACATATCCAG
CTGGATTTATGGatGTTATCACCATTGAAAGAACTGGTGAATTCTTCCGT
CTTCTATTTGATGTCAAAGGACGATTTGTTTGTCATCGTATCAGTCAAGA
AGAATCTGCTTACAAACTTGGAAAGGTCAAACGTGTTGCTGTTGGCAAAA
ACACTGTTCCTTATCTGGTCACACATGATGCCAGAACCATCAGATACCCA
GACCCAGACATTAAAGTAAACGATACTGTTGTCATTGACATCAAGACAGG
AAAAATTACTGACTCAATTAAATTTGACACTGGAAATACTGTCATGGTCA
TTGGTGGACGTAACACCGGTCGTGTTGGAATCATCACCAACCGTGAAAGA
CATGCTAGCTCGTACGATATCGTCCATATTAAAGATGCTGCTGGTCACAC
TTTCGCTACTCGTCTTAGTAACATTTTCATCGTTGGCAAAGGAAACAAAG
CCATGGTCACCTTACCGAAAGGAAAAGGTGTTCGTCTCAGTATCGCTGAG
GAACGTGACAGAAGACTCGCACACAAATAAATGCCACGAGGTCCAAAGAA
GCACCTCAAGAGACTCAATGCCCCAAGGCATTGGATGTTGGACAAGCTTA
GTGGAAACTTTGCTCCACGCCCAAGCTCCGGTCCACACAAGTTGCGCGAA
AGTCTCCCACTTATTGTTTTCTTGAGAAATCGCTTGAAGTATGCCTTGAA
CTACACTGAAGTTGTCAAGATCATGATGCAAAGAACCATCCAAGTTGATG
GAAAAGTTAGAACCGATGTTACATATCCAGCTGGATTTATGGatGTTATC
ACCATTGAAAGAACTGGTGAATTCTTCCGTCTTCTATTTGATGTCAAAGG
ACGATTTGTTTGTCATCGTATCAGTCAAGAAGAATCTGCTTACAAACTTG
GAAAGGTCAAACGTGTTGCTGTTGGCAAAAACACTGTTCCTTATCTGGTC
ACACATGATGCCAGAACCATCAGATACCCAGACCCAGACATTAAAGTAAA
CGATACTGTTGTCATTGACATCAAGACAGGAAAAATTACTGACTCAATTA
AATTTGACACTGGAAATACTGTCATGGTCATTGGTGGACGTAACACCGGT
CGTGTTGGAATCATCACCAACCGTGAAAGACATGCTAGCTCGTACGATAT
CGTCCATATTAAAGATGCTGCTGGTCACACTTTCGCTACTCGTCTTAGTA
ACATTTTCATCGTTGGCAAAGGAAACAAAGCCATGGTCACCTTACCGAAA
GGAAAAGGTGTTCGTCTCAGTATCGCTGAGGAACGTGACAGAAGACTCGC
ACACAAATAAATGCCACGAGGTCCAAAGAAGCACCTCAAGAGACTCAATG
CCCCAAGGCATTGGATGTTGGACAAGCTTAGTGGAAACTTTGCTCCACGC
CCAAGCTCCGGTCCACACAAGTTGCGCGAAAGTCTCCCACTTATTGTTTT
CTTGAGAAATCGCTTGAAGTATGCCTTGAACTACACTGAAGTTGTCAAGA
TCATGATGCAAAGAACCATCCAAGTTGATGGAAAAGTTAGAACCGATGTT
ACATATCCAGCTGGATTTATGGatGTTATCACCATTGAAAGAACTGGTGA
ATTCTTCCGTCTTCTATTTGATGTCAAAGGACGATTTGTTTGTCATCGTA
TCAGTCAAGAAGAATCTGCTTACAAACTTGGAAAGGTCAAACGTGTTGCT
GTTGGCAAAAACACTGTTCCTTATCTGGTCACACATGATGCCAGAACCAT
CAGATACCCAGACCCAGACATTAAAGTAAACGATACTGTTGTCATTGACA
TCAAGACAGGAAAAATTACTGACTCAATTAAATTTGACACTGGAAATACT
GTCATGGTCATTGGTGGACGTAACACCGGTCGTGTTGGAATCATCACCAA
CCGTGAAAGACATGCTAGCTCGTACGATATCGTCCATATTAAAGATGCTG
CTGGTCACACTTTCGCTACTCGTCTTAGTAACATTTTCATCGTTGGCAAA
GGAAACAAAGCCATGGTCACCTTACCGAAAGGAAAAGGTGTTCGTCTCAG
TATCGCTGAGGAACGTGACAGAAGACTCGCACACAAATAAATGCCACGAG
GTCCAAAGAAGCACCTCAAGAGACTCAATGCCCCAAGGCATTGGATGTTG
GACAAGCTTAGTGGAAACTTTGCTCCACGCCCAAGCTCCGGTCCACACAA
GTTGCGCGAAAGTCTCCCACTTATTGTTTTCTTGAGAAATCGCTTGAAGT
ATGCCTTGAACTACACTGAAGTTGTCAAGATCATGATGCAAAGAACCATC
CAAGTTGATGGAAAAGTTAGAACCGATGTTACATATCCAGCTGGATTTAT
GGatGTTATCACCATTGAAAGAACTGGTGAATTCTTCCGTCTTCTATTTG
ATGTCAAAGGACGATTTGTTTGTCATCGTATCAGTCAAGAAGAATCTGCT
TACAAACTTGGAAAGGTCAAACGTGTTGCTGTTGGCAAAAACACTGTTCC
TTATCTGGTCACACATGATGCCAGAACCATCAGATACCCAGACCCAGACA
TTAAAGTAAACGATACTGTTGTCATTGACATCAAGACAGGAAAAATTACT
GACTCAATTAAATTTGACACTGGAAATACTGTCATGGTCATTGGTGGACG
TAACACCGGTCGTGTTGGAATCATCACCAACCGTGAAAGACATGCTAGCT
CGTACGATATCGTCCATATTAAAGATGCTGCTGGTCACACTTTCGCTACT
CGTCTTAGTAACATTTTCATCGTTGGCAAAGGAAACAAAGCCATGGTCAC
CTTACCGAAAGGAAAAGGTGTTCGTCTCAGTATCGCTGAGGAACGTGACA
GAAGACTCGCACACAAATAAATGCCACGAGGTCCAAAGAAGCACCTCAAG
AGACTCAATGCCCCAAGGCATTGGATGTTGGACAAGCTTAGTGGAAACTT
TGCTCCACGCCCAAGCTCCGGTCCACACAAGTTGCGCGAAAGTCTCCCAC
TTATTGTTTTCTTGAGAAATCGCTTGAAGTATGCCTTGAACTACACTGAA
GTTGTCAAGATCATGATGCAAAGAACCATCCAAGTTGATGGAAAAGTTAG
AACCGATGTTACATATCCAGCTGGATTTATGGatGTTATCACCATTGAAA
GAACTGGTGAATTCTTCCGTCTTCTATTTGATGTCAAAGGACGATTTGTT
TGTCATCGTATCAGTCAAGAAGAATCTGCTTACAAACTTGGAAAGGTCAA
ACGTGTTGCTGTTGGCAAAAACACTGTTCCTTATCTGGTCACACATGATG
CCAGAACCATCAGATACCCAGACCCAGACATTAAAGTAAACGATACTGTT
GTCATTGACATCAAGACAGGAAAAATTACTGACTCAATTAAATTTGACAC
TGGAAATACTGTCATGGTCATTGGTGGACGTAACACCGGTCGTGTTGGAA
TCATCACCAACCGTGAAAGACATGCTAGCTCGTACGATATCGTCCATATT
AAAGATGCTGCTGGTCACACTTTCGCTACTCGTCTTAGTAACATTTTCAT
CGTTGGCAAAGGAAACAAAGCCATGGTCACCTTACCGAAAGGAAAAGGTG
TTCGTCTCAGTATCGCTGAGGAACGTGACAGAAGACTCGCACACAAATAA
ATGCCACGAGGTCCAAAGAAGCACCTCAAGAGACTCAATGCCCCAAGGCA
TTGGATGTTGGACAAGCTTAGTGGAAACTTTGCTCCACGCCCAAGCTCCG
GTCCACACAAGTTGCGCGAAAGTCTCCCACTTATTGTTTTCTTGAGAAAT
CGCTTGAAGTATGCCTTGAACTACACTGAAGTTGTCAAGATCATGATGCA
AAGAACCATCCAAGTTGATGGAAAAGTTAGAACCGATGTTACATATCCAG
CTGGATTTATGGatGTTATCACCATTGAAAGAACTGGTGAATTCTTCCGT
CTTCTATTTGATGTCAAAGGACGATTTGTTTGTCATCGTATCAGTCAAGA
AGAATCTGCTTACAAACTTGGAAAGGTCAAACGTGTTGCTGTTGGCAAAA
ACACTGTTCCTTATCTGGTCACACATGATGCCAGAACCATCAGATACCCA
GACCCAGACATTAAAGTAAACGATACTGTTGTCATTGACATCAAGACAGG
AAAAATTACTGACTCAATTAAATTTGACACTGGAAATACTGTCATGGTCA
TTGGTGGACGTAACACCGGTCGTGTTGGAATCATCACCAACCGTGAAAGA
CATGCTAGCTCGTACGATATCGTCCATATTAAAGATGCTGCTGGTCACAC
TTTCGCTACTCGTCTTAGTAACATTTTCATCGTTGGCAAAGGAAACAAAG
CCATGGTCACCTTACCGAAAGGAAAAGGTGTTCGTCTCAGTATCGCTGAG
GAACGTGACAGAAGACTCGCACACAAATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044288XLOC_044288Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071249-proteinTCONS_00071249-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071249-exon-scaffold_60-1491911889:669560..670080TCONS_00071249-exon-scaffold_60-1491911889:669560..670080Clytia hemisphaericaexon
TCONS_00071249-exon-scaffold_60-1510915933:669560..670080TCONS_00071249-exon-scaffold_60-1510915933:669560..670080Clytia hemisphaericaexon
TCONS_00071249-exon-scaffold_60-1575043694:669560..670080TCONS_00071249-exon-scaffold_60-1575043694:669560..670080Clytia hemisphaericaexon
TCONS_00071249-exon-scaffold_60-1491911889:670223..670300TCONS_00071249-exon-scaffold_60-1491911889:670223..670300Clytia hemisphaericaexon
TCONS_00071249-exon-scaffold_60-1510915933:670223..670300TCONS_00071249-exon-scaffold_60-1510915933:670223..670300Clytia hemisphaericaexon
TCONS_00071249-exon-scaffold_60-1575043694:670223..670300TCONS_00071249-exon-scaffold_60-1575043694:670223..670300Clytia hemisphaericaexon
TCONS_00071249-exon-scaffold_60-1491911889:670400..670580TCONS_00071249-exon-scaffold_60-1491911889:670400..670580Clytia hemisphaericaexon
TCONS_00071249-exon-scaffold_60-1510915933:670400..670580TCONS_00071249-exon-scaffold_60-1510915933:670400..670580Clytia hemisphaericaexon
TCONS_00071249-exon-scaffold_60-1575043694:670400..670580TCONS_00071249-exon-scaffold_60-1575043694:670400..670580Clytia hemisphaericaexon
TCONS_00071249-exon-scaffold_60-1491911889:676492..676589TCONS_00071249-exon-scaffold_60-1491911889:676492..676589Clytia hemisphaericaexon
TCONS_00071249-exon-scaffold_60-1510915933:676492..676589TCONS_00071249-exon-scaffold_60-1510915933:676492..676589Clytia hemisphaericaexon
TCONS_00071249-exon-scaffold_60-1575043694:676492..676589TCONS_00071249-exon-scaffold_60-1575043694:676492..676589Clytia hemisphaericaexon
TCONS_00071249-exon-scaffold_60-1491911889:677155..677401TCONS_00071249-exon-scaffold_60-1491911889:677155..677401Clytia hemisphaericaexon
TCONS_00071249-exon-scaffold_60-1510915933:677155..677401TCONS_00071249-exon-scaffold_60-1510915933:677155..677401Clytia hemisphaericaexon
TCONS_00071249-exon-scaffold_60-1575043694:677155..677401TCONS_00071249-exon-scaffold_60-1575043694:677155..677401Clytia hemisphaericaexon
TCONS_00071249-exon-scaffold_60-1491911889:679328..679938TCONS_00071249-exon-scaffold_60-1491911889:679328..679938Clytia hemisphaericaexon
TCONS_00071249-exon-scaffold_60-1510915933:679328..679938TCONS_00071249-exon-scaffold_60-1510915933:679328..679938Clytia hemisphaericaexon
TCONS_00071249-exon-scaffold_60-1575043694:679328..679938TCONS_00071249-exon-scaffold_60-1575043694:679328..679938Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_60supercontigscaffold_60:669560..679938 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2008.15	2090.37	2225.57	2260	1732.95	1405.19	1902.67	1967.79	2672.22	2568.68	2679.39	3266.74	3617.14	3507.38	3425.59	3512.53	3462.62	3926.88	1902.82	2132.8	3725.1	3638.89	2827.78	2763.06	2468.76	2606.72	3363.44	3366.39	2445.05	2532.26
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR005824KOW
IPR002942S4_RNA-bd
IPR013843Ribosomal_S4e_N
IPR000876Ribosomal_S4e
IPR014722Rib_L2_dom2
IPR013845Ribosomal_S4e_central_region
IPR03227740S_S4_C
IPR018199Ribosomal_S4e_N_CS
Vocabulary: Molecular Function
TermDefinition
GO:0003723RNA binding
GO:0003735structural constituent of ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
GO:0005840ribosome
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0005622 intracellular
cellular_component GO:0005840 ribosome
molecular_function GO:0003723 RNA binding
molecular_function GO:0003735 structural constituent of ribosome
Blast
[Close]
BLAST of TCONS_00071249 vs. Swiss-Prot (Human)
Match: RS4X (40S ribosomal protein S4, X isoform OS=Homo sapiens GN=RPS4X PE=1 SV=2)

HSP 1 Score: 400.593 bits (1028), Expect = 5.184e-136
Identity = 186/259 (71.81%), Postives = 224/259 (86.49%), Query Frame = 3 
Query:  519 MPRGPKKHLKRLNAPRHWMLDKLSGNFAPRPSSGPHKLRESLPLIVFLRNRLKYALNYTEVVKIMMQRTIQVDGKVRTDVTYPAGFMDVITIERTGEFFRLLFDVKGRFVCHRISQEESAYKLGKVKRVAVGKNTVPYLVTHDARTIRYPDPDIKVNDTVVIDIKTGKITDSIKFDTGNTVMVIGGRNTGRVGIITNRERHASSYDIVHIKDAAGHTFATRLSNIFIVGKGNKAMVTLPKGKGVRLSIAEERDRRLAHK 1295
            M RGPKKHLKR+ AP+HWMLDKL+G FAPRPS+GPHKLRE LPLI+FLRNRLKYAL   EV KI MQR I++DGKVRTD+TYPAGFMDVI+I++TGE FRL++D KGRF  HRI+ EE+ YKL KV+++ VG   +P+LVTHDARTIRYPDP IKVNDT+ ID++TGKITD IKFDTGN  MV GG N GR+G+ITNRERH  S+D+VH+KDA G++FATRLSNIF++GKGNK  ++LP+GKG+RL+IAEERD+RLA K
Sbjct:    1 MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICMQRFIKIDGKVRTDITYPAGFMDVISIDKTGENFRLIYDTKGRFAVHRITPEEAKYKLCKVRKIFVGTKGIPHLVTHDARTIRYPDPLIKVNDTIQIDLETGKITDFIKFDTGNLCMVTGGANLGRIGVITNRERHPGSFDVVHVKDANGNSFATRLSNIFVIGKGNKPWISLPRGKGIRLTIAEERDKRLAAK 259
The following BLAST results are available for this feature:
BLAST of TCONS_00071249 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RS4X5.184e-13671.8140S ribosomal protein S4, X isoform OS=Homo sapien... [more]
back to top