|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00071262 ID=TCONS_00071262|Name=TCONS_00071262|organism=Clytia hemisphaerica|type=transcript|length=2592bpRun BLAST on NCBI protein sequence of TCONS_00071262-protein >TCONS_00071262-protein ID=TCONS_00071262-protein|Name=TCONS_00071262-protein|organism=Clytia hemisphaerica|type=polypeptide|length=799bp MGKPKGKTSKVKLGNKASNKKTNKNVGANKYQEKFQSAKIKAGKFKKKPARun BLAST on NCBI transcript from alignment at scaffold_60:895851..904414+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00071262 ID=TCONS_00071262|Name=TCONS_00071262|organism=Clytia hemisphaerica|type=transcript|length=8564bp|location=Sequence derived from alignment at scaffold_60:895851..904414+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_60:895851..904414+ >TCONS_00071262 ID=TCONS_00071262|Name=TCONS_00071262|organism=Clytia hemisphaerica|type=CDS|length=40800bp|location=Sequence derived from alignment at scaffold_60:895851..904414+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00071262 vs. Swiss-Prot (Human)
Match: NOC3L (Nucleolar complex protein 3 homolog OS=Homo sapiens GN=NOC3L PE=1 SV=1) HSP 1 Score: 347.821 bits (891), Expect = 1.374e-105 Identity = 231/647 (35.70%), Postives = 371/647 (57.34%), Query Frame = 1
Query: 289 LKQNANDMSFLSKSLD----------KNSDGMKSYEAQPRSYSNVHKETDLKDDRVDLLPIKGATGLIRRKXXXXXXXXXXXXXXXXXXXXXXXLLPIMEKEPMSVIEILAAHREQVVQKKLQIAQLSMDIVENPYEKISQLKHLLKLAEKDEP---LTIRKLALLSMLEIFKDIIPSYNIRELSDDEQNAKVSRDVKKIRDYEQNLLKAYQRYLQSLEENIKVCKKFVKKSRGSGAHHEKQKKSMGSLVITSMKCLAELIKNLPHFNFRKNIINVLIPNIELSQDLEE-AGQICSKAIKETLLADYNGHIALDVVTIIQNLAKSKP-TLSPLVLETLLCLRVDADLVHATEEKGNKIERLKAKREAIXXXXXXXXXXXXVEDKLNQELQEVEAVESRDKIGKTHTEILKRLFVIYFRVLKLGFKSDLLGITLRGLARFSHLINIDFFGDLMNCLETVLKYEDLDTQDRLNCILTAMKVLSGQGEALTIDPRQFYTELYNVLLNFDSEIESTCFDSVRHCLEIMLIKRRKQVSHPQILGFLKRLSTMLLQMPIERSSDMFLLLRSIFQLYEKCDYLLDNENFGRGVFQPDITNPEHSNADSTALWELQLLSRFYQNDAELYCKHVMIGAPSHGPGSLPQRMLQRGAS 2184
+K +SFL++ L K+ + YE PR+ +T + + + LLPIK +G+I + E+ N++E+ + + E + + + +++ E L ++++ +KK+ IA L+ I+ +P I +LK L + + +P +T+RKL ++S++E+FKDI PSY IR L++ E++ K ++ +K+R++E+ L+ Y+ YL++LE+ +K K+ +K + S K K + + + K L EL+ LPHFNF NII +++P L D+ + ++C +A+K+ D G +L V+ +I K + + P +L+T LCLR+ V E NK ++ +E K +SR +RK KK E+KL +EL+E EA ES +K K HTE L +FV YFR+LK +S LL L GLA+F+HLIN++FF DL+ L T+++ DL Q+ L+C+ TA +LSGQG+ L IDP +FYT LY L + + + V CL++ML KRRKQVS + L F+KRL T+ L + S + R + + K D LLD+E+ G GVF P++ PE+ NA +TALWEL L R Y + + H++ GAPS G G+L + +R A+
Sbjct: 100 MKDLGQRVSFLTRDLSSSEPVHAKKRKHERIIDKYEKIPRTL-----QTAPEKELIHLLPIKDKSGIIPQTREKPVTDSNKDEEDQEEERELEEEIIEDPIQELTIEEHLIERKKKLQEKKMHIAALASAILSDPENNIKKLKELRSMLMEQDPDVAVTVRKLVIVSLMELFKDITPSYKIRPLTEAEKSTKTRKETQKLREFEEGLVSQYKFYLENLEQMVKDWKQ--RKLKKSNVVSLKAYKGLAEVAV---KSLCELLVALPHFNFHNNIIVLIVP---LMNDMSKLISEMCCEAVKKLFKQDKLGQASLGVIKVISGFVKGRNYEVRPEMLKTFLCLRIKEVEVKKDTEDINKPKKFMTFKEKRKSLSRMQRKWKKAEEKLERELREAEASESTEKKLKLHTETLNIVFVTYFRILKKAQRSPLLPAVLEGLAKFAHLINVEFFDDLLVVLHTLIESGDLSYQESLHCVQTAFHILSGQGDVLNIDPLKFYTHLYKTLFKLHAGATNEGVEIVLQCLDVMLTKRRKQVSQQRALAFIKRLCTLALHVLPNSSIGILATTRILMHTFPKTDLLLDSESQGSGVFLPELDEPEYCNAQNTALWELHALRRHYHPIVQRFAAHLIAGAPSEGSGALKPELSRRSAT 733 The following BLAST results are available for this feature:
BLAST of TCONS_00071262 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.