|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00071279 ID=TCONS_00071279|Name=TCONS_00071279|organism=Clytia hemisphaerica|type=transcript|length=2934bp
CAGTATTTTTCTAAACAACATTTATAAATATGCTATCAACAAAGATAAGA
AGTATTCTGAATGTCAGTGGTAAATATTCATCACGTGTTGCCACAAGCTA
CTTTGCAAATCAACGTTATGTAATGCACGATGTTACAGCAGAGAAAGTTC
CTGAAAACCTGCGTTCCCAATGGCCTAAAGCTTCTTTCAACATAAAGAAG
ATGCAGGAATTGTTGGATCATGATAACCACCAAATGAGAGAAGATTTAAG
GAAATTCTTGAGCGATCCTGTCTTCAAGCcaaaatataatatttcattGG
AAGAAGAAAGAgaggtGGCCCTACAACGTTTGAAGTTGATTTGTGATGCT
GGTTACATTTCAGTGCTGGACTTCAAGAATAACCCACTCAAAATCTTTGC
TGCACATGAGCTAGCCAGTATTATTGATCCTGCAATGGCCACTAAAATGA
CAGTCCAATTTAACCTGTTTGGTGGTACTGTATTGAAGTTAGGAACTGAA
AGACATCATTCGAAATTGTTGAGTGGTATTGACGATTTAAATGATGTTGG
ATGTTTTGGATTGACGGAGCTTGGGTACGGTAATAATGCGGTAGAGATGG
AGACAACTGCAATTTATGACGAAAAAACAGATGAACTGATCGTTAACACC
ACTACACCCCTTGCTCAAAAATATTGGATCACGAATGGTGCCGTTCATGC
TAAACATTGTGTTGTCTTCGCTCAATTAATGGTCAAAGGTGAAAACCATG
GTATTCATGGTGTGTTAGTTCCAATCCGTGACCAGGGCTTGAATACGATG
CCTGGTGTTTTGGTCGAAGATATGGGTTACAAGATCGGGTTAAACGGCGT
TGATAATGCAAAATTAACCTTCAACGATGTTCGAGTACCACGTGAGAACC
TGTTGAACAAATACTCCGATATTGATGATAATGGAAACTTTATAACCAGC
ATTAAAAGCCCACGTGCTCGATTCTTAACAGTGGCTGATCAATTACTTTC
TGGTCGTATTTGTATCGCTAGTATGGCTCAGGGCGCCGCTAAAACTGCAC
TGGCTATTGCATTAAGATATTCCGCAACACGTCTGACTGTTGGTGAAAGT
GGTAAATCAGATACACCCATATTGAGTTATCAACTCCAACAAAACGCATT
GATGCCTTTGTTAGCTGAAACATATTGCTTGAATATCGCTTTGGATTATG
TGAAAGATCGATGGGCAAACCAAGCAGAAGATGGTTCGGAACACCAGGAG
GTAGTCACAATGTGTTGCGTCATGAAACCATTTTGTGGATGGAATCTGGA
GAACTTGGCATCCATCTCAAGAGAACGTACTGGTGGTCAAGGCTACTTGT
CATGTAACCGATTGGGTGTGTTCATCAACCTCTCGCATGCTTGTATCACA
GCTGAAGGTGATAACTCAGTGCTGATGCAGAAAGTTGCCAAAGAGAGGTT
ATCCTTATTCAAACCATCTACTGGTGAAGCCCCTGTTAATAAGGATCTCA
GCTCTACTGAGTATCTGAATTACTTACTCCAAAAACGTGAAGATGTCTTG
TTTACAAACCTTGGCAAGCGAATGATGAAAGCTGGTAAAGAAAAACTCTA
CGATACTTGGATGTTGAAATGTAGTGATCTAGTACAACTGGCCGCGCGTT
CATTCGGCGAACGCTTGGTCAACGATCGCGTCTTGGTTGCTATCAATACT
GCAGATCCAACGCTGAAAGAAATCCTCAGTGAATTGCATACTTTGTATGT
TGTCAGTGTGGTGAAACGTAATTTAGCTTGGTATTTAACCAACGGTATCT
TGACCATTGAGCAAGGAAAAGAGATTGAAGACCTCTCCGATGAACTTTGT
AGAAACATTGCACCAAAATCTTTAGATTTGTGCGAAGCTTTCGGCTTGAC
GGATAGTATGATTTNACCATCTACTGGTGAAGCCCCTGTTAATAAGGATC
TCAGCTCTACTGAGTATCTGAATTACTTACTTCAAAAACGTGAAGATGTC
TTGTTTACAAACCTTGGCAAGCGAATGATGAAAGCTGGTAAAGAAAAACT
CTACGATACTTGGATGTTGAAATGTAGTGATCTAGTACAACTGGCCGCGC
GTTCATTCGGCGAACGCTTGGTCAACGATCGCGTCTTGGTTGCTATCAAT
ACTGCAGATCCAACGCTGAAAGAAATCCTCAGTGAATTGCATACTTTGTA
TGTTGTCAGTGTGGTGAAACGTAATTTAGCTTGGTATTTAACCAACGGTA
TCTTGACCATTGAGCAAGGAAAAGAGATTGAAGACCTCTCCGATGAACTT
TGTAGAAACATTGCACCAAAATCTTTAGATTTGTGCGAAGCTTTCGGCTT
GACGGATAGTATGATTTCCGCACCGATTGCGCTCGATTGGATTAAATACA
ATGAATATGATAACCAAGGGGAATTATAACATGGGACAGGAAGACATTAG
ATTTTGATTAcggtattatttttttcagatttgacTAATGACTGTTGCAT
AATAGTCCAAGTTTATTACTAGGCAACCTCTCTCTCTTGAATTCTAATAT
TACCTTAAAAGGGAAAATACGTAGACATTTTGTCTTATTCATCAATCAAA
ACTCGTCCTCTTCTTTTGTTTGATTATACACATCCTTTTAAACAGTTAGC
TTTAAAACTGATTTTATTATCCAGCCTTTGACCTACATTCTAGCCTCGGC
TGTTTTGTTAAACTTTGCAAATAATCAACACTATACTCGCTACTtgtaaa
tagttttaaaacttATAATATTcacacttttttcattttccttttttttt
atttggtaaaattattttttcgcatttttaatgttaatgttaTTTCTTGG
ATAATATACGAAGTCTTTTAACAAAATATAAGTTAACCATATTTCAGTTT
TAACGATCACATATATGATCAGTGAAGTATTTGC Run BLAST on NCBI transcript from alignment at scaffold_60:979153..983674+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00071279 ID=TCONS_00071279|Name=TCONS_00071279|organism=Clytia hemisphaerica|type=transcript|length=4522bp|location=Sequence derived from alignment at scaffold_60:979153..983674+ (Clytia hemisphaerica)
CAGTATTTTTCTAAACAACATTTATAAATATGCTATCAACAAAGATAAGA
AGTATTCTGAATGTCAGTGGTAAATATTCATCACGTGTTGCCACAAGCTA
CTTTGCAAATCAACGTTATGTAATGCACGATGTTACAGCAGAGAAAGTTC
CTGAAAACCTGCGTTCCCAATGGCCTAAAGCTTCTTTCAACATAAAGAAG
ATGCAGGAATTGTTGGATCATGATAACCACCAAATGAGAGAAGATTTAAG
GAAATTCTTGAGCGATCCTGTCTTCAAGCcaaaatataatatttcattGG
AAGAAGAAAGAgaggtttgaattttttttcacttcagGTTGAAAATTATT
TAGAATGATCTTGTTTTGTCAGTCCTTCTTTGTTTGCCGTGGTaaatttt
tgacaaatattCGTATCCATACAACATTCAAATTCATATAGCGTGAGATT
TTTAAATCTAGAGGATATTGATGAAGTTAAATAGCAACATTTGAATAGTA
GTTTCTTAAAATTCATTAACAAAAAAATGCCACTGTGAAATGCTGTTTTg
tctcaaaaattgataaagagCATTTTACCACGGCAAAAATAACTGAATTG
CCAAGACTGCTTGTGAAGTCTTTTAGTTTGGTGAGTTTTTTGTACTCAGC
TGTTTATTGCATGATTGTAACATTCTTCAAATACTAATAATTATTCTCTT
TGTATTTGAGACAATACTAAGGTACCTAAAATATATTGGGTTGGAATAAC
CAGGGTGAGTAGAAGGTTAATTCATGGGCCACTTACCTTATGATAAACTC
TTTTTTTCAAACAGTaacctttattatttatttttaggtGGCCCTACAAC
GTTTGAAGTTGATTTGTGATGCTGGTTACATTTCAGTGCTGGACTTCAAG
AATAACCCACTCAAAATCTTTGCTGCACATGAGCTAGCCAGTATTATTGA
TCCTGCAATGGCCACTAAAATGACAGTCCAATTTAACCTGTTTGGTGGTA
CTGTATTGAAGTTAGGAACTGAAAGACATCATTCGAAATTGTTGAGTGGT
ATTGACGATTTAAATGATGTTGGATGTTTTGGATTGACGGAGCTTGGGTA
ATTTTTGAAAGAGAATGTTTCATATCTCTTTAACATTTTGGTCTTATTAT
TTCAATCAGCAAAACACAGTTTACCTATGATATATTAACTCTGTATTCAA
TTTGACTTTTTCTTGGATTTCGGGAGAcaattctttcttcttcttttgaa
atttatagTTTTACCATGTTATAACTGCTCTAAATAAGGTTAAAATAGAA
AGTTTTACTACCTGTGATTCGGCAAGATTAGTCCCCTACACTCACAGGTA
AGGTACTTTATGCTCTGAGTTgttttttaaacgtttattTATCTTATTTA
TTATAGGTACGGTAATAATGCGGTAGAGATGGAGACAACTGCAATTTATG
ACGAAAAAACAGATGAACTGATCGTTAACACCACTACACCCCTTGCTCAA
AAATATTGGATCACGAATGGTGCCGTTCATGCTAAACATTGTGTTGTCTT
CGCTCAATTAATGGTCAAAGGTAATGGCAATACTTTTTTAAAGTCCGTTG
AGTTGATGACCAATTTATATGAAACCCGTCCATGCCTCATTGAACCCATT
CGAATTATTCCTAGCCAGTCGTGGTAAGAAAAAAGGTTCTAAATGCTGGT
CATTAAGCTTTAATGGTTCAGAAGGGTatgaatttgatttctttttttta
gtgAGTGGATTTTTAGCtctattatttttaaaacttaaaagttGAGAGAA
GATATTCTTTAAAATGGTAGTGGCTTTCCCAGTGTTGTTGAGTGTTCATT
GTGGTTTTTCAAGTGGGATAAAGTTTAAGGGAGTTATTGTCACATAGATA
ATTTTGAGCCAATTTCTGCAGTGAATAGGGACCACCAGTTGTTGTGTATC
AAAAAATATAGTAGATTTTTATCCCGGTTCTCAATATTGGTTTGGAATAA
GAATTTCTTTGGTTTAAAAATCCAAATCTAAAtgcaatattttcttttaa
tcAATTTCAGGTGAAAACCATGGTATTCATGGTGTGTTAGTTCCAATCCG
TGACCAGGGCTTGAATACGATGCCTGGTGTTTTGGTCGAAGATATGGGTT
ACAAGATCGGGTTAAACGGCGTTGATAATGCAAAATTAACCTTCAACGAT
GTTCGAGTACCACGTGAGAACCTGTTGAACAAATACTCCGATATTGATGA
TAATGGAAACTTTATAACCAGCATTAAAAGCCCACGTGCTCGATTCTTAA
CAGTGGCTGATCAATTACTTTCTGGTCGTATTTGTATCGCTAGTATGGCT
CAGGGCGCCGCTAAAACTGCACTGGCTATTGCATTAAGGTACTtagtgaa
attattttttgaacttCTCGACCTTTAGCTCCTGTCATCATCACGTTGGA
GTCTTAGTGATTTCAAATGAAACATGCTTCAAGTGAAAAAATAACGAGAA
AACTTTCACGAAATTCAACTTTACGGGAAGCTGGATATGCCCTTACATTA
TTTATATCTTTATCCCTAAATTTTCATCTGTGAATAAACGGAAAGTCGTG
ATCCTGTTAAACAAAAGCCCGATTTTATATTccattattttatatttttt
ccagATATTCCGCAACACGTCTGACTGTTGGTGAAAGTGGTAAATCAGAT
ACACCCATATTGAGTTATCAACTCCAACAAAACGCATTGATGCCTTTGTT
AGCTGAAACATATTGCTTGAATATCGCTTTGGATTATGTGAAAGATCGAT
GGGCAAACCAAGCAGAAGATGGTTCGGAACACCAGGAGGTAGTCACAATG
TGTTGCGTCATGAAACCATTTTGTGGATGGAATCTGGAGAACTTGGCATC
CATCTCAAGAGAACGTACTGGTGGTCAAGGCTACTTGTCATGTAACCGAT
TGGGTGTGTTCATCAACCTCTCGCATGCTTGTATCACAGCTGAAGGTGAT
AACTCAGTGCTGATGCAGAAAGTTGCCAAAGAGAGGTTATCCTTATTCAA
ACCATCTACTGGTGAAGCCCCTGTTAATAAGGATCTCAGCTCTACTGAGT
ATCTGAATTACTTACTCCAAAAACGTGAAGATGTCTTGTTTACAAACCTT
GGCAAGCGAATGATGAAAGCTGGTAAAGAAAAACTCTACGATACTTGGAT
GTTGAAATGTAGTGATCTAGTACAACTGGCCGCGCGTTCATTCGGCGAAC
GCTTGGTCAACGATCGCGTCTTGGTTGCTATCAATACTGCAGATCCAACG
CTGAAAGAAATCCTCAGTGAATTGCATACTTTGTATGTTGTCAGTGTGGT
GAAACGTAATTTAGCTTGGTATTTAACCAACGGTATCTTGACCATTGAGC
AAGGAAAAGAGATTGAAGACCTCTCCGATGAACTTTGTAGAAACATTGCA
CCAAAATCTTTAGATTTGTGCGAAGCTTTCGGCTTGACGGATAGTATGAT
TTNACCATCTACTGGTGAAGCCCCTGTTAATAAGGATCTCAGCTCTACTG
AGTATCTGAATTACTTACTTCAAAAACGTGAAGATGTCTTGTTTACAAAC
CTTGGCAAGCGAATGATGAAAGCTGGTAAAGAAAAACTCTACGATACTTG
GATGTTGAAATGTAGTGATCTAGTACAACTGGCCGCGCGTTCATTCGGCG
AACGCTTGGTCAACGATCGCGTCTTGGTTGCTATCAATACTGCAGATCCA
ACGCTGAAAGAAATCCTCAGTGAATTGCATACTTTGTATGTTGTCAGTGT
GGTGAAACGTAATTTAGCTTGGTATTTAACCAACGGTATCTTGACCATTG
AGCAAGGAAAAGAGATTGAAGACCTCTCCGATGAACTTTGTAGAAACATT
GCACCAAAATCTTTAGATTTGTGCGAAGCTTTCGGCTTGACGGATAGTAT
GATTTCCGCACCGATTGCGCTCGATTGGATTAAATACAATGAATATGATA
ACCAAGGGGAATTATAACATGGGACAGGAAGACATTAGATTTTGATTAcg
gtattatttttttcagatttgacTAATGACTGTTGCATAATAGTCCAAGT
TTATTACTAGGCAACCTCTCTCTCTTGAATTCTAATATTACCTTAAAAGG
GAAAATACGTAGACATTTTGTCTTATTCATCAATCAAAACTCGTCCTCTT
CTTTTGTTTGATTATACACATCCTTTTAAACAGTTAGCTTTAAAACTGAT
TTTATTATCCAGCCTTTGACCTACATTCTAGCCTCGGCTGTTTTGTTAAA
CTTTGCAAATAATCAACACTATACTCGCTACTtgtaaatagttttaaaac
ttATAATATTcacacttttttcattttcctttttttttatttggtaaaat
tattttttcgcatttttaatgttaatgttaTTTCTTGGATAATATACGAA
GTCTTTTAACAAAATATAAGTTAACCATATTTCAGTTTTAACGATCACAT
ATATGATCAGTGAAGTATTTGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00071279-exon-scaffold_60-1491911889:979153..979466 | TCONS_00071279-exon-scaffold_60-1491911889:979153..979466 | Clytia hemisphaerica | exon |
| TCONS_00071279-exon-scaffold_60-1510915933:979153..979466 | TCONS_00071279-exon-scaffold_60-1510915933:979153..979466 | Clytia hemisphaerica | exon |
| TCONS_00071279-exon-scaffold_60-1575043694:979153..979466 | TCONS_00071279-exon-scaffold_60-1575043694:979153..979466 | Clytia hemisphaerica | exon |
| TCONS_00071279-exon-scaffold_60-1491911889:979990..980249 | TCONS_00071279-exon-scaffold_60-1491911889:979990..980249 | Clytia hemisphaerica | exon |
| TCONS_00071279-exon-scaffold_60-1510915933:979990..980249 | TCONS_00071279-exon-scaffold_60-1510915933:979990..980249 | Clytia hemisphaerica | exon |
| TCONS_00071279-exon-scaffold_60-1575043694:979990..980249 | TCONS_00071279-exon-scaffold_60-1575043694:979990..980249 | Clytia hemisphaerica | exon |
| TCONS_00071279-exon-scaffold_60-1491911889:980559..980722 | TCONS_00071279-exon-scaffold_60-1491911889:980559..980722 | Clytia hemisphaerica | exon |
| TCONS_00071279-exon-scaffold_60-1510915933:980559..980722 | TCONS_00071279-exon-scaffold_60-1510915933:980559..980722 | Clytia hemisphaerica | exon |
| TCONS_00071279-exon-scaffold_60-1575043694:980559..980722 | TCONS_00071279-exon-scaffold_60-1575043694:980559..980722 | Clytia hemisphaerica | exon |
| TCONS_00071279-exon-scaffold_60-1491911889:981213..981540 | TCONS_00071279-exon-scaffold_60-1491911889:981213..981540 | Clytia hemisphaerica | exon |
| TCONS_00071279-exon-scaffold_60-1510915933:981213..981540 | TCONS_00071279-exon-scaffold_60-1510915933:981213..981540 | Clytia hemisphaerica | exon |
| TCONS_00071279-exon-scaffold_60-1575043694:981213..981540 | TCONS_00071279-exon-scaffold_60-1575043694:981213..981540 | Clytia hemisphaerica | exon |
| TCONS_00071279-exon-scaffold_60-1491911889:981807..983674 | TCONS_00071279-exon-scaffold_60-1491911889:981807..983674 | Clytia hemisphaerica | exon |
| TCONS_00071279-exon-scaffold_60-1510915933:981807..983674 | TCONS_00071279-exon-scaffold_60-1510915933:981807..983674 | Clytia hemisphaerica | exon |
| TCONS_00071279-exon-scaffold_60-1575043694:981807..983674 | TCONS_00071279-exon-scaffold_60-1575043694:981807..983674 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_60 | supercontig | scaffold_60:979153..983674 + |
Blast
BLAST of TCONS_00071279 vs. Swiss-Prot (Human)
Match: ACOX3 (Peroxisomal acyl-coenzyme A oxidase 3 OS=Homo sapiens GN=ACOX3 PE=1 SV=2) HSP 1 Score: 279.256 bits (713), Expect = 9.386e-81 Identity = 200/605 (33.06%), Postives = 301/605 (49.75%), Query Frame = 3
Query: 264 DPVF--KPKYNISLEEEREVALQRLKLICDAGYISVLDFKNNPLKIFAAHELASIIDPAMATKMTVQFNLFGGTVLKLGTERHHSKLLSGIDDLNDVGCFGLTELGYGNNAVEMETTAIYDEKTDELIVNTTTPLAQKYWITNGAVHAKHCVVFAQLMVKGEN-HGIHGVLVPIRD-QGLNTMPGVLVEDMGYKIGLNGVDNAKLTFNDVRVPRENLLNKYSDIDDNGNFITSIKSPRARFLTVADQLLSGRICIASMAQGAAKTALAIALRYSATRLTVGESGKSDTPILSYQLQQNALMPLLAETYCLN-----IALDYVK--------DRWANQAEDGSEHQEVVTMCCVMKPFCGWNLENLASISRERTGGQGYLSCNRLGVFINLSHACITAEGDNSVLMQKVAKERLSLFKPSTGE-APVNKDLSSTEYLN----YLLQKRE-----DVLFTN-------------LGKRMMKAGKEKLYDTWMLKCSDLVQLA-----ARSFGERLVNDRVLVAIN--TADPTLKEILSELHTLYVVSVVKRNLAWYLTNGILTIEQGKEI-EDLSDELCRNIAPKSLDLCEAFGLTDSMIXPSTGEA 1934
DP+F P ++SLE+ RE+ R K I + ++SV D +PLK+ A + + D ++A K + +FG V G+ERH + + I + GCF LTEL +G+N + TTA YD T+E I+++ A K+W+ N A H VVFA+L V G+ HG+H +V IRD + L MPGV+V D+G K+G NG+DN F+ VRVPR++LLN+ D+ G +++ K R RF L SGR+ I S+A K A+AIALR+SATR G + + + P+L Y +QQ L+P LA Y L+ + LD V+ DR A QAE G +E+ + KP W + RE GG GYL+ NRLGV + + T EGDN++L+Q+ + L L + A L S ++L+ L QK E D L + L + K +EK + + + Q++ A +F E V R ++ + P+L+ +L L LY + + R+ A G + EQ E+ E LC + ++ L + D ++ G A
Sbjct: 58 DPLFARSPGADLSLEKYRELNFLRCKRIFEYDFLSVEDMFKSPLKVPALIQCLGMYDSSLAAKYLLHSLVFGSAVYSSGSERHLT-YIQKIFRMEIFGCFALTELSHGSNTKAIRTTAHYDPATEEFIIHSPDFEAAKFWVGNMGKTATHAVVFAKLCVPGDQCHGLHPFIVQIRDPKTLLPMPGVMVGDIGKKLGQNGLDNGFAMFHKVRVPRQSLLNRMGDVTPEGTYVSPFKDVRQRFGASLGSLSSGRVSIVSLAILNLKLAVAIALRFSATRRQFGPTEEEEIPVLEYPMQQWRLLPYLAAVYALDHFSKSLFLDLVELQRGLASGDRSARQAELG---REIHALASASKPLASWTTQQGIQECREACGGHGYLAMNRLGVLRDDNDPNCTYEGDNNILLQQTSNYLLGLLAHQVHDGACFRSPLKSVDFLDAYPGILDQKFEVSSVADCLDSAVALAAYKWLVCYLLRETYQKLNQEKRSGSSDFEARNKCQVSHGRPLALAFVELTVVQRFHEHVHQPSVPPSLRAVLGRLSALYALWSLSRHAALLYRGGYFSGEQAGEVLESAVLALCSQLKDDAVALVDVIAPPDFVLDSPIGRA 658
The following BLAST results are available for this feature:
|
