TCONS_00071291 (transcript) - C. hemisphaerica

Overview
NameTCONS_00071291
Unique NameTCONS_00071291
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1180

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00071291 ID=TCONS_00071291|Name=TCONS_00071291|organism=Clytia hemisphaerica|type=transcript|length=1180bp
GTCGAGCTTTTTAAAATGGCTGCCAACCTGCAGAGATaaccaacaaaaaa
aaacacagaaaaacaCACACTGGACACTATCAAAACCTCCTGGATATTAT
TAAAACATATCAGATGTAATCAAGCTTTGAATCCTTACTGAGAGTATGTC
TGGTATATACTATTTTGTGATTGTGGGGAAAGATGATAATCCCATATTTG
AGGCTGAATTTACACAAGGAAAAACAACTGTCCTTGAGCCTCAACTTAAA
GGAAAAGATGATCATAGACACTTGAATCAGTTTATTTTACATGGAGCTTT
AGATTTGGTTGAAGAAGTTATGTGGACAACCAATAATATGTACTTAAAGA
ACGTTGATAAATTCAATGAATGGCTTGTTTCTGCTTTTGTAACAGCCAGT
GGTGCTAAATTTATGATGCTTCATGATATACGGAATGATGATGgtatcaa
gaatttttttcaagaatgttATGAAATGTATGCTAAATTGACAATGAATC
CCTTTTACGAGTATAATACTCAAATAAAGTCAAGTGTATTTGAACGAAAA
GTTCAGACttttgggaaaaaatatttatctgTCTAAAGTTAAAAATGCCA
CATATATACATATACGTAACTATTGATAGTTTTAATAAGTTGCATTTTTA
TCCTAGGATAATCACTCTTGTTTTCAATCTTATTCGCTGTAACGAAACTG
TCAAGGTATGAGTAGGTTTAATTAATGCTGTAGGACAACAGTGTTCCAGG
GCAGACAaatatttaaagaaaatattttgaaatgataTTAGGGTAAAATg
actaaaaacaaaattttttgtctAATTTACCTTTTATTTGCATCGAAATC
AAATTAGAATATAATTTTGTaagctttattttttttattgttttattttt
ggtattttggaatTCAACATGTGACAATGTTTTATTTGTTCACTATTTAC
CACCTGTTACCACAGATATTTAAACTGCTTTTACGACCCTGTATCTCTAA
GGTCTTTATTTTGttaagttaaaggttttgtttttaaataaaagtgatat
catttgcttactcatcaattttaattcacaagctttttcgcaCTAGATTG
ACACAGATGTAGAGCAAGAtgggtcagaaagaggaaaagaaaaacatttt
tttgcaaatatcAGCATTATAACAATAAGC
Run BLAST on NCBI

protein sequence of TCONS_00071291-protein

>TCONS_00071291-protein ID=TCONS_00071291-protein|Name=TCONS_00071291-protein|organism=Clytia hemisphaerica|type=polypeptide|length=146bp
MSGIYYFVIVGKDDNPIFEAEFTQGKTTVLEPQLKGKDDHRHLNQFILHG
ALDLVEEVMWTTNNMYLKNVDKFNEWLVSAFVTASGAKFMMLHDIRNDDG
IKNFFQECYEMYAKLTMNPFYEYNTQIKSSVFERKVQTFGKKYLSV
Run BLAST on NCBI

transcript from alignment at scaffold_60:1153418..1163831+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00071291 ID=TCONS_00071291|Name=TCONS_00071291|organism=Clytia hemisphaerica|type=transcript|length=10414bp|location=Sequence derived from alignment at scaffold_60:1153418..1163831+ (Clytia hemisphaerica)
GTCGAGCTTTTTAAAATGGCTGCCAACCTGCAGAGATaaccaacaaaaaa
aaacacagaaaaacaCACACTGGACACTATCAAAACCTCCTGGATATGTA
AGGGTTACTGCagatcttttatttttttttaattcttatcTTACTTTTTA
TTTATGAACTATATAGTACTAACTTTTCTAGCAGAAAATGACCAGGCAGG
AATAGTCTCAACTCACCAACAGACCAACACAACAAGCAAGTCAAGACAAG
ATTCAAGAAAGTCCTCAACTCACAGCACAATAAAAAACATGAGATTTTTC
TCCTGACTGAGAAAAACCCTTTCCTTTCCAATTTTCTCTTGTTTGCTGGT
TATCCTGGGGGGGAAAGTCAGTCTGAGATAACcaacaaaaaacacaaaaa
agtgCATGCGATGCACACATCAAAACCTATATGTCAATCGAGGATTATAT
CCTAAATAAGagaataccgtgagtggtcctaaatccaacaatccgacagc
cctgcctaaatccgatggggtgtttcaaagatacaaactaaaataaaaac
aaacctttcgctgtgacacaATGAAGattaccaaagtgtcaactaaactg
agagatttgatacactgaaccaattgaaccaaagcattatgcttcttata
caaaacataattttttattacaaaattgttaacatttcaaacacgagcaa
cagattcagaataatagaagtaattatttttacaactcacacttttttta
tcacattaattgacatcttgacattttagtcatcttgttagatgttttgt
ttcgagagttcttgcaatatagtttattgttcaacttggagagggaatgt
ttgtaaacatagaattttttttcttatcaattatttggggggtcggattt
aagCAGGACTGTCGGATTTAAGCAGgactgtcggatttaggaccactcac
ggtacccAAGTTATAGGATTACCTTATTTAGGAGATNATTATATCCTAAA
TAAGAGAATACCCAAGTTATAGGATTGccttatttaggagattttcagtc
tcttactgtagaatcgtctaatattgacatgcgtcttctaatttcgacac
cggatctgtaaaataatcaaaacaaaccttgaatgaaattcatagtatca
ttcttatcgaacaagttcatccatcaaactagaagttcaataaacattgc
aatcctttcaataaaaaaaaacaaccaaattataagcagtttcacACAAC
AcatgaaacgcatgcaaacttcctcgtaactttctcgtgctCATCATTac
aattttacaactttattacgcttcaagtcataATTTGCGCccttagtcga
cctggtttccccATCCTCATtgtttatagaccttttttcaaagaggacgt
cctgttgaataattatgtagtccagccataaaaacaatgatagagccatg
cataattaatgTATCATGCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNtgcatattgtaata
attatgcatggttttatcattgtttttctgctggactacataattattca
acagggtggcctctttgaaaaaaggtctattgcaagCACGCTCTAGGCAC
TAAGAGGTcgcgttaaacttctaggcgccgcACCGACCTAGCACACCtgg
tcccttttcaaattcataaggaaaccgggttcttttaattattttcagtt
cacggtaaaaaggtctactaaaaaattcctcgcgttcAAAAATGatgttg
tgatttgggcatcttccttgaaagcatgctaattagttttttagtgatta
ctacatcgttaaagttttcttttcaaatataagtaataacacttcacatt
tctcatattatattaacaatctgtgatgtgatagggagagtacaatttag
tgattcattgataactttggtatgtatttgcaggcttcggcataagaaaa
aAGAAGGCGTGTGATCATCGCACGCCTANtaactttggtatgtatttgtt
tatgtttgattttttatttcgaagaccagcctacagctatgtcgaaatta
gaagacgcatgtcgatattagacgatcctacggtaaGAGAACGTTACCTA
AACTAGGAGAATTCTGTACGTTTCACCAATTTATTTCAGAGCAGACTATT
TGCGCAATATGAAAATAAGATCACGTGATCAGATTCCGATGacccaaaat
caaaataaaataccttttaatttttttcaaacttcgaaaaaacataaata
gcctcatttgcatgtgttgacgtaatttttaaaataatgaagaagCATCC
TCGACCTTCAAAACGCGTTTTATAGTGTCCTAGTAGGTTGGTTCCCCcct
agaaaatggaaaaaaatcccTCTCCCCCCCCTTTTAAATCCCCCCCCCct
gagatttgaaaaaaaatccccccccccctagaaattttttcttcaatttt
tgctcttgaaaaattgaaaaaaaagtttccacagagtgaaatgaaaagtt
aaaaatgaaCTGCTAGTGAAAGATAACTTCTAATCAATTTATTTACAAAG
cgcatagtgtgcaagggggttccaggtcccacctgaaaattcaggtccca
ccttatcctaaaattcccaccttcagcccagactcccagatcccagctaa
aaacaaaaaaaatatactaattcgaggaacaaaacaaaacttctttaCCA
TAATATGAAGATATGATATGgtatgatatgatatgatatgaccTACATTT
GGTGTTAGAACAggggggggtccatgtacaatacagcggcatgtatcagt
actttgtagcaaatttcgattttaaacaccccccacccctatagtacaaa
atgtacaaaatactagccagcaaactcccaaaaacaccccaacacccgct
atattttacaatatactatccagtactatccagcaaactcacaaatacac
cctgacaccccctgtataaTACTATCAAGTAAACTGCCAAATATACCCCA
ACACACCCTTACatagtacaatatactatccagaaaACTAACAAATATAC
CCTTACACctcttcataaaataaaaattttaagccaaaaaaattgaaact
ttggggcaagttttttattcttcccataaaaaaaatttcaaaaaattttg
tcgaaaattgacaaaaacaattgagaattttgaaagatttccggcgaaaa
tctgaaataaattacaatttgatttgattttggctttttagtacacaaat
actaagcagaaaatccgaaatttgaccctgacacccctGTATAGTACATG
TATACTAAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCCC
CCCCCTTTTCctattttctgaaaagaaaatcccCCCCTTTTAAAAGGGGG
GGGACACTATGACCCTCTTATTTAGGAGAGACAAGAGCAACTCACTTTCT
GtgtgacctgcgttttgacCGCGCTTAAACGCGTTTCTTAAATATGACCC
GATCTATATGTTTACTTTTCACGAAATTCTCATGATGTAGATCCGCCTTT
AGATTGATAGACCctaaggggccgtcgacaaacaattttcctttttttta
acggcttctggccgtaaggggtgggagggggtcactgcaatgccgttaaa
aaaagttgaaaaaaaggGAAGTCTCTcttacaaatttcatcagtccaaaa
agtagaaacatgtAAAGAAAGGCCAAAGCAACCACACGACATTTATCTTA
TTCCCGATCAGTGATCACTAATTAATGCTTTGACGAGAAAAATGACTGGT
CACGTGACGAAAGTCAGCAATTTTTCTCTCCGCTTCAGTTGACTCCTTGC
TCCACCCAACCCGCTCTGACTTGCTGCGGGGCttggagtttcaaaattga
aaggtcacggctcaaaaccacatgtttatTCCGTGCGAAAAGAAGATCTT
TGAGGATTACGAATCGAAAGAACATGGCGGCCATTGACCGGTGATagtat
ttacttttgaagaatttttttggccGCTAAGTCATAGGGAGGAGGGGGTC
TGAACCTTAACGACCTCAGgctgttaaaaaaaaggaaagtcgtTTGTCAA
CGACCCCTAACCATCCTAGGTCCACGAGACATAAGGAGAACTTGACCAAA
TTTAGctagaagggagaaaaaacGCGCGGAGTCGATCTATGAAGTTCAAA
ACTTGTGCAACATGATAGGAAAgtcaaaaattaacaaagaaagaaaagtc
tcctagttaagagaaagaaatctcctacttaagagaccttctcttaaata
gagtatATCTCTTATTTAGGGTATAAACCTCGACTGTATGTTATGTTTCA
CTACTGCaggacttctttttttttcattccaaaATTTGCCTGTAACAGGG
GGCGggcgacacaggatttccgagggcaaaagttttcaccaaaatttgaa
atttccaaggcgagagaagaaaatgtatgaatttccaaggcaattgaatt
aaaaaaggNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNcaattgaattaa
aaaaggcaaaaaagagtggaatttccgatgcattttgcaaaagtacatgg
atttttatcggaatttctgaccaccactggaaaagaaaaattatttccaa
ggctagaaaaaatcaaaaaatgcacgtcgtccgacggAGGGGGGGGTAAC
ACACCAAATTAAGCGAACTTTGTCAAACTTTAGTTAATCGAACtacaaaa
gtttgattaaattttcATATTGCCCAGGACTTGCAATTTAATTGCTTCAG
TTACGTTTGACGATTGTATTTGATTATGTTCGATTACCAGTTTCCAGAGT
GTGGCATGTTTGTTCGAGATCTTGAATACACAACTCGGAATAATTTAAGT
GCAGGTGCAAAATTCGAGCTTTTCAGGTGCAAGCTCAAACAGTTTTTTAA
CCTCAAATGCAGAGTTcagcttttttttcttcaaatgcaGCTAATTTCAG
CAATTCTTTGCTGCCTTTTTTGGTCAAACTTTTGAGATATTATAGGTGCA
CCTTGTTCGGACTAAAATTTATCAGGTACGTTCTTCCAGTGCAGACAGtc
taaactcctatatcagtaTTAGCAAGTCCAGgctagaaactaggctagtc
ttacctcttttatatttcccttgacacaacacattgacaagtaatccctg
agagaagtttatatcaaaatctgcaacaaaaacgaaagttatctcctcta
ctgattgcttccggGTGCTATTTCGCAGCTGTTCATCAAATTTCCACtaa
tgaggttgccgcatttcaaactgcccttctttttggcacccatggccttt
cagtgccttgcacaacGGACCGCTGTAAAAtctcacccttcatatatttg
tttcaatatgTGATATGTGACTTAGGTTTTtcctcatcttcaatttactg
aagaaagcaggaatttgatctgagagttagattgtcaacaaagtgcagta
aaaaatcattgaataaataagaagaactttaaaatcttaaatattttcat
tttgaagaataggtgcaaaaaagtgaaacatagaaaagtttcatttttca
ttgcattaatcggAATGgcagatttggaaaattttctaccgggtgcgcca
caaaaaagtttctctctttaaaactaatttactcaaaatctaaaaatttt
aaaagaaacattcctatttcattggaataaagaaaaataaacttaaattt
tgatgggtcatttattaaattcgattcattagatcaaaagttatgctcaa
ttgaataaaaaagttactttcggaaagtgctcaaNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNaaaaatcgacctatcaaattaaacagaagcataatta
catgatacatcagtattttcgtttcagtcattaaaaatgataattagctg
tctaaaggaccttttgttatataaagaaaggttgaatttcaatgaaagga
agaaaattcgtcgaaaaaggcaaaaaaatctggtaaaattcataaaaata
catcatttatgggtttcgaggtagattcagccttacatagactttttCCA
GTCTACAACCAAAAGTCTGAGGGAAATTTCCTTAataataaattaaatta
attttgaagattttaaacccttttgacCCTTCAGTTTCTAAATTTATGcg
tttagttactgaaaaatgctgtAAATCATGTAAAGACTGGcttgcgattg
ccaaatttaaaataaaattttgataggtcgatttttaacgtttttgagca
ctttccgaaagtaacttttttattcaattgagcataacttttgatctaat
taatcgaatttaataaatgacctatcaaaatttaagtttatctttcttct
ttccaatggaataggtacggttcttttaaaattttcagacttcgagaaaa
tcagttttaaagagagaaacttttttgtggcacacccggtatgtTTAGTC
TTTTAcgcaaacccctgtaactatgggcgagcaccccgttgttaagatgt
tggcttgaaataaaaaatgataccactcaaaacaaaagaaaaatcagccc
gtactcgaaatcccgtaatcttggtatacaagtttaagtctatactggcA
GAACTTGGTATTTCCGAATATTTTTTCGAGTGCAGCCTTTCCATACTCTg
caagttgtttgctgcaaacaaaaaattctcgaaattttttgtcaatataa
aaaagactttaaaattctaaggacaaaacattaatttttgcactaagtga
aaaatgtgttgcagaaatattcattttttagctttttttgtgaaaccaGT
CCGAAAAGCAATCAAAAAATAGGtagtctccatgacaaattgtcccaaaa
tcttttactaccagggtagtaaaatacctcttccaagaatctgggtggtg
gtatgtaaaaattcgtaaaaatccttttacagctcatatatgtctgagat
tttactaccaaCCAACCCCTGTATATAGGCATGATAAAACTTAAGACTAC
AGGATCTGAAAGTGCTGGAccgatttatttttgttttcagtggtttcact
tttCATTTCCAACCAATATCTTCAACAGGGTGCTCATACAGTAATATTTG
TAAAACTTTTCAATGCAaaccaattaaaaaaaacttcccAAGTTTCAGTT
TTTTGCTGCCTTTCTTTGACAAATGTAGCTCTTGCATTAAATTCTCGCTT
TCCACAGAGAATTAAAGATAGGAAAATGATTAATCTTTAGGATCACTGAT
TGAAAGAAATAAAGGATGGCGATTATTATAGGGTGACGTTTCAATGGCCA
TGGGCCAGGGGCCTTGTTTAATGTTGCAGtctcattaattttttaaattt
gacattttagatttttgagcaaaacttttgaaccaatgaagtaaaattaa
aaagtaatacacccattcttaagttaggctttcctctgaatgattccaaa
acaattgttgaaaaatcttttctactgcctacaatatcaaatcaaagagg
gtaacttatttgtggcacacccagTAGAATTGGGAGCAGAGCTGAAGGTT
GAAGATATCttaaataatgttaaaaatctatgccgTAGGGAAGGTTTTAT
ATCCCTCTTGAAAAGCAttttgcctgcggcgcaataaatttatttagaat
ttgcatgcaaaatttctttgatattttgctttgtgaaaGCCCCCACTTTG
CTTCTAGAATTTACcgggggctattttccttagccccccccccctgaaaa
atgctgggggatggacccctctgcacactgtgaatttcaatgaaatttta
atATCGTGAACAGTTTATTTAAAGTAGTTTAACCATGATCAGTAATGGAT
ACACTTTGCATCTCTGCATCTTCCATTTCAGTATTAAAACATATCAGATG
TAATCAAGCTTTGAATCCTTACTGAGAGTATGTCTGGTATATACTATTTT
GTGATTGTGGGGAAAGATGATAATCCCATATTTGAGGCTGAATTTACACA
AGGAAAAACAACTGTCCTTGAGCCTCAACTTAAAGGAAAAGATGATCATA
GACACTTGAATCAGTTTATTTTACATGGAGCTTTAGATTTGGTTGAAGAA
GTTATGTGGACAACCAATAATATGTACTTAAAGAACGTTGATAAATTCAA
TGAATGGCTTGTTTCTGCTTTTGTAACAGCCAGTGGTGCTAAATTTATGA
TGCTTCATGATATACGGAATGATGATGgtatcaagaatttttttcaagaa
tgttATGAAATGTATGCTAAATTGACAATGAATCCCTTTTACGAGTATAA
TACTCAAATAAAGTCAAGTGTATTTGAACGAAAAGTTCAGACttttggga
aaaaatatttatctgTCTAAAGTTAAAAATGCCACATATATACATATACG
TAACTATTGATAGTTTTAATAAGTTGCATTTTTATCCTAGGATAATCACT
CTTGTTTTCAATCTTATTCGCTGTAACGAAACTGTCAAGGTATGAGTAGG
TTTAATTAATGCTGTAGGACAACAGTGTTCCAGGGCAGACAaatatttaa
agaaaatattttgaaatgataTTAGGGTAAAATgactaaaaacaaaattt
tttgtctAATTTACCTTTTATTTGCATCGAAATCAAATTAGAATATAATT
TTGTaagctttattttttttattgttttatttttggtattttggaatTCA
ACATGTGACAATGTTTTATTTGTTCACTATTTACCACCTGTTACCACAGA
TATTTAAACTGCTTTTACGACCCTGTATCTCTAAGGTCTTTATTTTGtta
agttaaaggttttgtttttaaataaaagtgatatcatttgcttactcatc
aattttaattcacaagctttttcgcaCTAGATTGACACAGATGTAGAGCA
AGAtgggtcagaaagaggaaaagaaaaacatttttttgcaaatatcAGCA
TTATAACAATAAGC

Coding sequence (CDS) from alignment at scaffold_60:1153418..1163831+

>TCONS_00071291 ID=TCONS_00071291|Name=TCONS_00071291|organism=Clytia hemisphaerica|type=CDS|length=441bp|location=Sequence derived from alignment at scaffold_60:1153418..1163831+ (Clytia hemisphaerica)
ATGTCTGGTATATACTATTTTGTGATTGTGGGGAAAGATGATAATCCCAT
ATTTGAGGCTGAATTTACACAAGGAAAAACAACTGTCCTTGAGCCTCAAC
TTAAAGGAAAAGATGATCATAGACACTTGAATCAGTTTATTTTACATGGA
GCTTTAGATTTGGTTGAAGAAGTTATGTGGACAACCAATAATATGTACTT
AAAGAACGTTGATAAATTCAATGAATGGCTTGTTTCTGCTTTTGTAACAG
CCAGTGGTGCTAAATTTATGATGCTTCATGATATACGGAATGATGATGgt
atcaagaatttttttcaagaatgttATGAAATGTATGCTAAATTGACAAT
GAATCCCTTTTACGAGTATAATACTCAAATAAAGTCAAGTGTATTTGAAC
GAAAAGTTCAGACttttgggaaaaaatatttatctgTCTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044306XLOC_044306Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071291-proteinTCONS_00071291-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071291-exon-scaffold_60-1491911889:1153418..1153514TCONS_00071291-exon-scaffold_60-1491911889:1153418..1153514Clytia hemisphaericaexon
TCONS_00071291-exon-scaffold_60-1510915933:1153418..1153514TCONS_00071291-exon-scaffold_60-1510915933:1153418..1153514Clytia hemisphaericaexon
TCONS_00071291-exon-scaffold_60-1575043694:1153418..1153514TCONS_00071291-exon-scaffold_60-1575043694:1153418..1153514Clytia hemisphaericaexon
TCONS_00071291-exon-scaffold_60-1491911889:1162749..1163831TCONS_00071291-exon-scaffold_60-1491911889:1162749..1163831Clytia hemisphaericaexon
TCONS_00071291-exon-scaffold_60-1510915933:1162749..1163831TCONS_00071291-exon-scaffold_60-1510915933:1162749..1163831Clytia hemisphaericaexon
TCONS_00071291-exon-scaffold_60-1575043694:1162749..1163831TCONS_00071291-exon-scaffold_60-1575043694:1162749..1163831Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_60supercontigscaffold_60:1153418..1163831 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
46.9395	42.69	26.476	22.8606	21.8389	13.5537	16.5384	18.4319	9.11087	7.24339	6.33871	5.03382	2.62968	1.33963	6.31482	5.12695	8.02791	5.46566	3.0925	3.81033	11.4661	9.84377	41.1569	34.6595	4.38368	6.82708	8.16644	7.59084	11.6706	13.9792
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR006722Sedlin
IPR011012Longin-like_dom
Vocabulary: Biological Process
TermDefinition
GO:0006888ER to Golgi vesicle-mediated transport
GO:0006810transport
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006888 ER to Golgi vesicle-mediated transport
biological_process GO:0006810 transport
cellular_component GO:0005622 intracellular
Blast
[Close]
BLAST of TCONS_00071291 vs. Swiss-Prot (Human)
Match: TPC2B (Trafficking protein particle complex subunit 2B OS=Homo sapiens GN=TRAPPC2B PE=1 SV=1)

HSP 1 Score: 194.897 bits (494), Expect = 2.891e-60
Identity = 92/144 (63.89%), Postives = 109/144 (75.69%), Query Frame = 2 
Query:  146 MSGIYYFVIVGKDDNPIFEAEFTQGKTTVLEPQLKGKDDHRHLNQFILHGALDLVEEVMWTTNNMYLKNVDKFNEWLVSAFVTASGAKFMMLHDIRNDDGIKNFFQECYEMYAKLTMNPFYEYNTQIKSSVFERKVQTFGKKYL 577
            MSG +YFVIVG  DNP+FE EF          + + KDDHRHLNQFI H ALDLV+E MW +NNMYLK VDKFNEW VSAFVTA   +F+MLHDIR +DGIKNFF + Y++Y K +MNPFYE N+ I+SS F+RKVQ  GKK+L
Sbjct:    1 MSGSFYFVIVGHHDNPVFEMEFLPAG------KAESKDDHRHLNQFIAHAALDLVDENMWLSNNMYLKTVDKFNEWFVSAFVTAGHMRFIMLHDIRQEDGIKNFFTDVYDLYIKFSMNPFYEPNSPIRSSAFDRKVQFLGKKHL 138
The following BLAST results are available for this feature:
BLAST of TCONS_00071291 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TPC2B2.891e-6063.89Trafficking protein particle complex subunit 2B OS... [more]
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