TCONS_00071302 (transcript) - C. hemisphaerica

Overview
NameTCONS_00071302
Unique NameTCONS_00071302
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length134

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00071302 ID=TCONS_00071302|Name=TCONS_00071302|organism=Clytia hemisphaerica|type=transcript|length=134bp
TGTAAAGGCACGCTGTTACATAACACATCGACACTATGGTTGATGAAATC
AGGTTCATATTGTCTTTTGATCATCTTCTTGAGTTGGAACAATTTCACTC
GGAATGAGCATCGCACATAAGGATTTGACAGCTC
Run BLAST on NCBI

transcript from alignment at scaffold_60:1257345..1258498+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00071302 ID=TCONS_00071302|Name=TCONS_00071302|organism=Clytia hemisphaerica|type=transcript|length=1154bp|location=Sequence derived from alignment at scaffold_60:1257345..1258498+ (Clytia hemisphaerica)
TGTAAAGGCACGCTGTTACATAACACATCGACCTGGGTAAGAAAAATGTA
GATACAAAGCTTGCTGTTGTTAAAGGGGCTCTCTCGTAGAAGGTATTACC
ACCCGTTAGATGGATAATTGTGAACGCGGAAAGATATATGTGCTCAGAGT
TTAACGCCGTAAACATCCTAATAgaaagtttatgtatttgcactatTGAG
GACAgcagagtgactgaagcgatttgggagaacccgcagttttgacccgc
aaaatcgagaacgtaaaaattttgatttaggaGCTAACCTTTCCCGTCAT
TAAAAACACATAAATAAACTCGTTAGTGAACGCGGGAGGATCTATAtgcc
atagtgtgcagaggggtcaaTATACCCCCATTTATATTTCATCTCGACTA
AATAATGCATCCcactatttcaaaaatttttcgaatcCGCACTAACTACA
ATGGTAGTTCACAAACCATTtataaccaaaaaaaaaattcaaatttatat
gGTAAGAAAGGGTATAAAATGGCGCCACAGGCAAAGAATTTGCCATTTAC
ATTGCTATTTTCTTGGACTATACCCAATTCTTTGACAAATTTAAGATATA
ATAcatatttttaccaaaaaattgttATCCCTcctatttttatttaatac
CCCCCTAAAAactcaaaccccccattttacTCGGAAAATCTCTTATCCCC
ACTATAAAGCCTTTCTTGAAAAGTTGGATTGGCCCTTAAAGAAGGGGGGG
GTTCACACTATGTATGCGCCAGGTTTAACATTAACACCCTACTTACACTA
TGGTTGATGAAATCAGGTTCATATTNTACCCAATTCTTTGACCAATTTAA
GATATAATAcatatttttaccaaaaaattgttATCCCTcctatttttatt
taatacCCCCCTAAAAactcaaaccccccattttacTCGGAAAATCTCTT
ATCCCCACTATAAAGCCTTTCTTGAAAAGTTGGATTCTCCCTTAAAGAAG
GGGGGGGTTCACACTATGTATGCGCCAGGTTTAACATTAACACCCTACTT
ACACTATGGTTGATGAAATCAGGTTCATATTGTCTTTTGATCATCTTCTT
GAGTTGGAACAATTTCACTCGGAATGAGCATCGCACATAAGGATTTGACA
GCTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044311XLOC_044311Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071302-exon-scaffold_60-1491911889:1257345..1257376TCONS_00071302-exon-scaffold_60-1491911889:1257345..1257376Clytia hemisphaericaexon
TCONS_00071302-exon-scaffold_60-1510915933:1257345..1257376TCONS_00071302-exon-scaffold_60-1510915933:1257345..1257376Clytia hemisphaericaexon
TCONS_00071302-exon-scaffold_60-1575043694:1257345..1257376TCONS_00071302-exon-scaffold_60-1575043694:1257345..1257376Clytia hemisphaericaexon
TCONS_00071302-exon-scaffold_60-1491911889:1258141..1258160TCONS_00071302-exon-scaffold_60-1491911889:1258141..1258160Clytia hemisphaericaexon
TCONS_00071302-exon-scaffold_60-1510915933:1258141..1258160TCONS_00071302-exon-scaffold_60-1510915933:1258141..1258160Clytia hemisphaericaexon
TCONS_00071302-exon-scaffold_60-1575043694:1258141..1258160TCONS_00071302-exon-scaffold_60-1575043694:1258141..1258160Clytia hemisphaericaexon
TCONS_00071302-exon-scaffold_60-1491911889:1258417..1258498TCONS_00071302-exon-scaffold_60-1491911889:1258417..1258498Clytia hemisphaericaexon
TCONS_00071302-exon-scaffold_60-1510915933:1258417..1258498TCONS_00071302-exon-scaffold_60-1510915933:1258417..1258498Clytia hemisphaericaexon
TCONS_00071302-exon-scaffold_60-1575043694:1258417..1258498TCONS_00071302-exon-scaffold_60-1575043694:1258417..1258498Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_60supercontigscaffold_60:1257345..1258498 +
Expression
No biomaterial libraries express this feature.
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00071302 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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